Wall clock time and date at job start Tue Mar 31 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39735 * 119.57769 * 322.96130 * 3 2 1 5 5 C 1.36946 * 119.34229 * 180.02562 * 4 3 2 6 6 C 1.40305 * 118.50908 * 0.02562 * 5 4 3 7 7 C 1.47494 * 120.44628 * 180.02562 * 6 5 4 8 8 O 1.21613 * 119.99880 * 22.06669 * 7 6 5 9 9 N 1.34776 * 120.00155 * 202.06933 * 7 6 5 10 10 C 1.36893 * 119.99774 * 9.32531 * 9 7 6 11 11 H 1.07994 * 120.00010 * 46.37308 * 10 9 7 12 12 C 1.38999 * 119.99750 * 226.36789 * 10 9 7 13 13 N 1.31370 * 120.00138 * 349.94675 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 169.94855 * 12 10 9 15 15 H 1.48499 * 109.47071 * 59.99881 * 14 12 10 16 16 H 1.48498 * 109.47075 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47103 * 299.99892 * 14 12 10 18 18 C 1.39704 * 120.00207 * 189.32424 * 9 7 6 19 19 C 1.38982 * 120.08106 * 271.41584 * 18 9 7 20 20 C 1.38077 * 119.91963 * 179.78839 * 19 18 9 21 21 C 1.38314 * 120.07758 * 0.46304 * 20 19 18 22 22 C 1.38311 * 120.16229 * 359.78730 * 21 20 19 23 23 C 1.38074 * 120.07942 * 359.97438 * 22 21 20 24 24 C 1.39780 * 119.11139 * 359.97438 * 6 5 4 25 25 N 1.31500 * 120.56742 * 359.97438 * 24 6 5 26 26 H 4.51242 * 14.18020 * 0.02562 * 4 2 1 27 27 H 1.08000 * 120.32638 * 0.05532 * 4 3 2 28 28 H 1.07999 * 120.74424 * 180.02562 * 5 4 3 29 29 H 0.96996 * 119.99797 * 184.90239 * 13 12 10 30 30 H 1.08000 * 120.03883 * 359.97438 * 19 18 9 31 31 H 1.07997 * 119.96045 * 180.24607 * 20 19 18 32 32 H 1.08007 * 119.91671 * 179.76254 * 21 20 19 33 33 H 1.07995 * 119.95945 * 179.97438 * 22 21 20 34 34 H 1.08002 * 120.04291 * 179.97438 * 23 22 21 35 35 H 1.07997 * 119.71501 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2962 -0.9691 0.7320 5 6 4.6656 -0.9637 0.7291 6 6 5.3298 0.0236 -0.0144 7 6 6.8036 0.0689 -0.0480 8 8 7.4487 -0.9295 0.2089 9 7 7.4355 1.2168 -0.3634 10 6 6.7260 2.3831 -0.4653 11 1 6.0099 2.6479 0.2986 12 6 6.9272 3.2263 -1.5517 13 7 7.9287 3.0106 -2.3741 14 14 5.7734 4.6664 -1.8425 15 1 5.8125 5.5766 -0.6698 16 1 6.2005 5.4053 -3.0577 17 1 4.3896 4.1617 -2.0315 18 6 8.8147 1.2165 -0.5864 19 6 9.6920 1.4040 0.4751 20 6 11.0545 1.3987 0.2515 21 6 11.5464 1.2168 -1.0283 22 6 10.6761 1.0351 -2.0879 23 6 9.3125 1.0343 -1.8712 24 6 4.5759 0.9631 -0.7236 25 7 3.2618 0.9240 -0.6966 26 1 -1.0500 -0.0010 0.0001 27 1 2.7549 -1.7157 1.2941 28 1 5.2218 -1.7028 1.2865 29 1 8.1120 3.6386 -3.0903 30 1 9.3085 1.5506 1.4740 31 1 11.7370 1.5404 1.0765 32 1 12.6126 1.2170 -1.2008 33 1 11.0637 0.8938 -3.0860 34 1 8.6335 0.8928 -2.6991 35 1 5.0771 1.7275 -1.2988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728820950.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:27 Heat of formation + Delta-G solvation = 93.879261 kcal Electronic energy + Delta-G solvation = -22169.670907 eV Core-core repulsion = 18906.635771 eV Total energy + Delta-G solvation = -3263.035136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79675 -40.55755 -38.90911 -36.83097 -34.82407 -33.77815 -33.53119 -32.00048 -31.52507 -30.21256 -27.25468 -26.01396 -24.43878 -23.26793 -23.18462 -21.49883 -20.28364 -19.79135 -18.51677 -17.49239 -17.44102 -16.88757 -16.48251 -16.45524 -16.04468 -15.45294 -15.26039 -15.04192 -14.69128 -14.51639 -14.18543 -14.11399 -13.63897 -13.46526 -13.30962 -13.06643 -12.65284 -12.31424 -12.21418 -12.08653 -11.86989 -11.81625 -11.28599 -10.95964 -10.80371 -10.41410 -9.79418 -9.72686 -9.57487 -9.39967 -8.14878 -6.30247 -0.56471 0.27184 0.70728 0.85585 1.37842 1.44102 1.49769 1.62223 1.69056 2.18106 2.26048 2.72614 2.87236 3.02978 3.10825 3.19701 3.80395 3.96220 4.00023 4.16585 4.22911 4.25454 4.31958 4.46887 4.69036 4.78709 4.90761 4.95944 5.06367 5.09664 5.26390 5.32829 5.38564 5.65405 5.67405 5.81372 5.92975 6.05741 6.20386 6.50137 6.51722 6.84802 6.92593 7.31070 7.78397 8.57038 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.005779 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.987392 B = 4844.080996 C = 6092.884333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.210 4.210 3 C 0.218 3.782 4 C -0.149 4.149 5 C -0.032 4.032 6 C -0.171 4.171 7 C 0.514 3.486 8 O -0.613 6.613 9 N -0.412 5.412 10 C -0.364 4.364 11 H 0.092 0.908 12 C 0.024 3.976 13 N -0.859 5.859 14 Si 0.962 3.038 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.258 1.258 18 C 0.147 3.853 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.041 4.041 24 C 0.139 3.861 25 N -0.506 5.506 26 H 0.277 0.723 27 H 0.177 0.823 28 H 0.154 0.846 29 H 0.277 0.723 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 -2.585 2.649 7.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.211 4.211 3 C 0.083 3.917 4 C -0.169 4.169 5 C -0.058 4.058 6 C -0.176 4.176 7 C 0.306 3.694 8 O -0.500 6.500 9 N -0.127 5.127 10 C -0.490 4.490 11 H 0.110 0.890 12 C -0.183 4.183 13 N -0.492 5.492 14 Si 0.785 3.215 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.182 1.182 18 C 0.058 3.942 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.143 4.143 22 C -0.164 4.164 23 C -0.061 4.061 24 C -0.018 4.018 25 N -0.215 5.215 26 H 0.293 0.707 27 H 0.194 0.806 28 H 0.172 0.828 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.980 -2.358 2.067 6.753 hybrid contribution 0.132 0.470 0.205 0.530 sum -5.849 -1.887 2.272 6.552 Atomic orbital electron populations 1.25948 0.96102 0.94685 0.94277 1.19634 0.91365 1.04943 1.05132 1.17322 0.89570 0.91530 0.93322 1.21904 0.93577 1.00350 1.01047 1.21540 0.94500 0.95492 0.94306 1.21030 0.94061 0.99574 1.02932 1.18578 0.87601 0.82573 0.80696 1.90617 1.68303 1.35678 1.55424 1.40998 1.04155 1.06688 1.60863 1.19420 1.23105 0.99118 1.07361 0.89005 1.26254 0.97171 1.00948 0.93972 1.69965 1.26163 1.36335 1.16740 0.85456 0.79488 0.78181 0.78416 1.19142 1.19910 1.18218 1.17886 0.83975 0.98719 0.93576 1.21297 0.94624 1.02539 0.97687 1.21093 0.93742 1.02423 0.98270 1.21318 1.00397 1.00461 0.92174 1.21158 0.92355 1.02906 0.99954 1.21007 0.95367 0.94654 0.95123 1.24356 0.87721 0.95786 0.93986 1.68046 1.10105 1.23683 1.19666 0.70699 0.80595 0.82807 0.91216 0.88076 0.83913 0.83264 0.84792 0.88283 0.79617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 19.25 74.32 1.43 -0.31 16 2 C -0.21 -5.97 13.43 30.01 0.40 -5.56 16 3 C 0.22 7.60 6.59 40.58 0.27 7.87 16 4 C -0.15 -4.56 9.72 22.33 0.22 -4.35 16 5 C -0.03 -1.16 9.65 22.47 0.22 -0.94 16 6 C -0.17 -7.56 5.65 -19.96 -0.11 -7.67 16 7 C 0.51 26.13 7.42 86.68 0.64 26.77 16 8 O -0.61 -33.41 16.61 -4.07 -0.07 -33.48 16 9 N -0.41 -21.21 2.59 -462.27 -1.20 -22.40 16 10 C -0.36 -18.20 5.79 84.09 0.49 -17.72 16 11 H 0.09 4.55 7.13 -2.91 -0.02 4.53 16 12 C 0.02 1.17 4.99 84.94 0.42 1.59 16 13 N -0.86 -42.85 9.18 21.67 0.20 -42.65 16 14 Si 0.96 38.82 29.03 68.60 1.99 40.81 16 15 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 18 C 0.15 7.40 3.71 38.24 0.14 7.54 16 19 C -0.14 -6.47 9.97 22.41 0.22 -6.25 16 20 C -0.14 -5.10 10.04 22.25 0.22 -4.88 16 21 C -0.13 -4.37 10.04 22.31 0.22 -4.15 16 22 C -0.14 -5.68 10.04 22.25 0.22 -5.46 16 23 C -0.04 -1.97 7.39 22.41 0.17 -1.80 16 24 C 0.14 6.13 9.33 85.12 0.79 6.92 16 25 N -0.51 -20.88 10.27 -187.90 -1.93 -22.81 16 26 H 0.28 1.90 7.80 -4.42 -0.03 1.86 16 27 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 28 H 0.15 5.09 7.87 -2.91 -0.02 5.07 16 29 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 30 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 31 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 34 H 0.10 5.06 7.27 -2.91 -0.02 5.04 16 35 H 0.19 8.83 4.18 -2.91 -0.01 8.82 16 Total: -1.00 -66.22 314.90 6.09 -60.13 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 1.12 Total: 28.78 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.97 Total: -8.38 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -2.93 Total: -87.86 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.07 Total: -33.48 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.99 Total: 40.81 kcal Total: -66.22 6.09 -60.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728820950.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.005 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds