Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40322 * 120.42528 * 126.72451 * 3 2 1 5 5 C 1.36889 * 118.52879 * 179.70341 * 4 3 2 6 6 C 1.39924 * 119.32463 * 0.53420 * 5 4 3 7 7 C 1.47112 * 119.59415 * 179.72159 * 6 5 4 8 8 C 1.34443 * 119.99992 * 179.72788 * 7 6 5 9 9 C 1.47331 * 120.00111 * 180.02562 * 8 7 6 10 10 C 1.39846 * 120.12818 * 0.02562 * 9 8 7 11 11 C 1.37951 * 119.96678 * 180.02562 * 10 9 8 12 12 C 1.38271 * 120.24355 * 359.97438 * 11 10 9 13 13 C 1.38996 * 120.26025 * 0.02562 * 12 11 10 14 14 O 1.35761 * 119.98461 * 179.97438 * 13 12 11 15 15 C 1.34825 * 117.00053 * 174.48094 * 14 13 12 16 16 H 1.08000 * 120.00086 * 5.05646 * 15 14 13 17 17 C 1.38654 * 120.00109 * 185.05350 * 15 14 13 18 18 N 1.31554 * 120.00194 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00100 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47207 * 60.00276 * 19 17 15 21 21 H 1.48499 * 109.47415 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47283 * 300.00325 * 19 17 15 23 23 C 1.38585 * 120.02983 * 0.02562 * 13 12 11 24 24 N 1.33107 * 120.81433 * 359.45147 * 6 5 4 25 25 C 1.31480 * 121.59226 * 0.27362 * 24 6 5 26 26 H 1.07998 * 120.73488 * 359.97438 * 4 3 2 27 27 H 1.07999 * 120.33929 * 180.27844 * 5 4 3 28 28 H 1.07994 * 119.99767 * 359.73401 * 7 6 5 29 29 H 1.08004 * 119.99702 * 0.02562 * 8 7 6 30 30 H 1.07998 * 120.01799 * 359.74115 * 10 9 8 31 31 H 1.08002 * 119.87773 * 179.97438 * 11 10 9 32 32 H 1.07998 * 119.86676 * 179.97438 * 12 11 10 33 33 H 0.96993 * 120.00301 * 180.02562 * 18 17 15 34 34 H 1.07992 * 120.12449 * 179.97438 * 23 13 12 35 35 H 1.07998 * 119.70557 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2783 0.7245 -0.9698 5 6 4.6464 0.7030 -0.9298 6 6 5.2913 -0.0435 0.0625 7 6 6.7614 -0.0758 0.1073 8 6 7.3895 -0.7860 1.0605 9 6 8.8618 -0.8178 1.1057 10 6 9.6086 -0.1098 0.1588 11 6 10.9870 -0.1424 0.2039 12 6 11.6347 -0.8727 1.1832 13 6 10.9021 -1.5800 2.1292 14 8 11.5438 -2.2956 3.0880 15 6 10.7793 -2.8645 4.0418 16 1 9.7028 -2.8095 3.9751 17 6 11.3752 -3.5203 5.1082 18 7 12.6865 -3.5870 5.1898 19 14 10.3160 -4.3079 6.4301 20 1 9.4442 -5.3411 5.8155 21 1 11.1884 -4.9398 7.4522 22 1 9.4732 -3.2683 7.0738 23 6 9.5169 -1.5558 2.0936 24 7 4.5911 -0.7206 0.9697 25 6 3.2763 -0.7193 0.9664 26 1 2.7571 1.2896 -1.7283 27 1 5.2222 1.2533 -1.6592 28 1 7.3360 0.4712 -0.6255 29 1 6.8147 -1.3332 1.7931 30 1 9.1065 0.4584 -0.6103 31 1 11.5623 0.4046 -0.5284 32 1 12.7141 -0.8943 1.2126 33 1 13.1033 -4.0460 5.9356 34 1 8.9462 -2.1051 2.8276 35 1 2.7387 -1.2792 1.7173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730150831.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = 60.224741 kcal Electronic energy + Delta-G solvation = -20187.012928 eV Core-core repulsion = 16922.518422 eV Total energy + Delta-G solvation = -3264.494506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29748 -40.69980 -38.43084 -37.76461 -35.44982 -34.23242 -33.61344 -32.62453 -30.86184 -29.69881 -27.32177 -25.86815 -24.79406 -23.35345 -23.12115 -20.74192 -20.11567 -19.62312 -18.68402 -17.74348 -17.11060 -16.74024 -16.21413 -15.95811 -15.55808 -15.49302 -15.36223 -15.26971 -14.54085 -14.43667 -14.32086 -14.17754 -14.05803 -13.82712 -13.53931 -13.22655 -13.16923 -12.80515 -12.64635 -12.31357 -12.18270 -11.95680 -11.45956 -11.23070 -10.95748 -10.76762 -10.55889 -10.08881 -9.15082 -8.68593 -8.45607 -6.13957 -0.86504 0.25663 0.33620 0.76348 1.35489 1.43708 1.51064 1.53667 1.54204 2.11603 2.18819 2.72828 2.87768 2.99295 3.25818 3.26654 3.50947 3.60666 3.77893 4.06395 4.11018 4.13194 4.30325 4.42712 4.53964 4.57648 4.68891 4.77224 4.99467 5.03092 5.08251 5.13613 5.24181 5.39987 5.52571 5.59453 5.69673 5.75032 5.92201 6.04245 6.24039 6.35377 6.89341 6.99398 7.80346 8.77359 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.003047 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.582206 B = 9186.253296 C =10864.019268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.286 3.714 3 C -0.099 4.099 4 C -0.014 4.014 5 C -0.149 4.149 6 C 0.177 3.823 7 C -0.122 4.122 8 C -0.057 4.057 9 C -0.032 4.032 10 C -0.170 4.170 11 C -0.069 4.069 12 C -0.199 4.199 13 C 0.107 3.893 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.099 0.901 17 C -0.021 4.021 18 N -0.920 5.920 19 Si 1.014 2.986 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.258 1.258 23 C -0.228 4.228 24 N -0.513 5.513 25 C 0.156 3.844 26 H 0.176 0.824 27 H 0.184 0.816 28 H 0.168 0.832 29 H 0.117 0.883 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.114 0.886 33 H 0.272 0.728 34 H 0.114 0.886 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.871 10.384 -14.271 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.029 4.029 3 C -0.105 4.105 4 C -0.041 4.041 5 C -0.168 4.168 6 C 0.043 3.957 7 C -0.140 4.140 8 C -0.077 4.077 9 C -0.032 4.032 10 C -0.189 4.189 11 C -0.087 4.087 12 C -0.218 4.218 13 C 0.057 3.943 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.219 4.219 18 N -0.559 5.559 19 Si 0.834 3.166 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.183 1.183 23 C -0.248 4.248 24 N -0.222 5.222 25 C -0.006 4.006 26 H 0.193 0.807 27 H 0.201 0.799 28 H 0.185 0.815 29 H 0.135 0.865 30 H 0.182 0.818 31 H 0.179 0.821 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.803 9.787 -13.478 23.660 hybrid contribution -0.043 -0.423 0.643 0.772 sum -16.847 9.363 -12.835 23.156 Atomic orbital electron populations 1.81316 1.13182 1.09837 1.09201 1.25508 0.92272 0.92507 0.92614 1.17128 0.84615 1.06517 1.02253 1.21657 0.94032 0.93173 0.95212 1.22151 0.94742 1.00187 0.99767 1.20591 0.94304 0.90719 0.90094 1.22149 0.89959 1.01545 1.00372 1.22256 0.91146 0.96475 0.97805 1.18995 0.93301 0.96323 0.94611 1.21419 0.93516 1.03171 1.00748 1.21112 0.94963 0.96355 0.96259 1.20672 0.99757 1.03127 0.98273 1.19877 0.92219 0.91730 0.90436 1.83949 1.36414 1.59468 1.34175 1.21727 0.91311 1.34245 1.01634 0.88390 1.26523 0.97739 0.97675 0.99951 1.70165 1.10788 1.42586 1.32329 0.84711 0.77163 0.78559 0.76213 1.18220 1.19539 1.18271 1.21406 0.93537 1.06657 1.03159 1.67988 1.08383 1.20574 1.25254 1.23129 0.89078 0.93186 0.95158 0.80658 0.79854 0.81478 0.86521 0.81818 0.82136 0.86820 0.91865 0.86777 0.80671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.91 18.54 19.00 0.35 -9.56 16 2 C 0.29 4.62 15.36 88.33 1.36 5.98 16 3 C -0.10 -1.26 5.76 -21.15 -0.12 -1.38 16 4 C -0.01 -0.11 9.84 22.46 0.22 0.11 16 5 C -0.15 -1.33 9.76 22.36 0.22 -1.11 16 6 C 0.18 2.97 6.70 41.69 0.28 3.25 16 7 C -0.12 -2.24 9.27 23.73 0.22 -2.02 16 8 C -0.06 -1.51 9.44 23.80 0.22 -1.29 16 9 C -0.03 -1.06 5.87 -20.16 -0.12 -1.17 16 10 C -0.17 -4.56 9.41 22.59 0.21 -4.34 16 11 C -0.07 -2.04 10.02 22.21 0.22 -1.82 16 12 C -0.20 -8.07 9.98 22.46 0.22 -7.84 16 13 C 0.11 5.27 6.64 22.53 0.15 5.42 16 14 O -0.23 -14.02 9.76 -22.81 -0.22 -14.25 16 15 C -0.41 -24.21 9.48 67.92 0.64 -23.57 16 16 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 17 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 18 N -0.92 -56.68 13.67 21.61 0.30 -56.38 16 19 Si 1.01 43.28 29.55 68.60 2.03 45.31 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 23 C -0.23 -9.88 8.91 22.69 0.20 -9.68 16 24 N -0.51 -10.46 9.31 -184.22 -1.71 -12.17 16 25 C 0.16 2.44 10.92 85.12 0.93 3.37 16 26 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 27 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 28 H 0.17 1.92 6.06 -2.91 -0.02 1.90 16 29 H 0.12 3.43 7.39 -2.91 -0.02 3.40 16 30 H 0.16 2.70 6.16 -2.91 -0.02 2.68 16 31 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.11 5.18 5.63 -2.91 -0.02 5.16 16 35 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -77.23 324.05 7.21 -70.02 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.14 Total: 13.88 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 5.33 Total: -36.86 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -1.07 Total: -78.11 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.22 Total: -14.25 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -77.23 7.21 -70.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730150831.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.245 kcal (2) G-P(sol) polarization free energy of solvation -77.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds