Wall clock time and date at job start Tue Mar 31 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40324 * 120.42225 * 26.91969 * 3 2 1 5 5 C 1.36902 * 118.52609 * 180.02562 * 4 3 2 6 6 C 1.39919 * 119.32108 * 359.97438 * 5 4 3 7 7 C 1.47111 * 119.59254 * 179.97438 * 6 5 4 8 8 C 1.34441 * 120.00228 * 186.39612 * 7 6 5 9 9 C 1.47335 * 119.99991 * 16.34989 * 8 7 6 10 10 C 1.39848 * 120.13178 * 39.28432 * 9 8 7 11 11 C 1.37948 * 119.97049 * 180.27461 * 10 9 8 12 12 C 1.38270 * 120.24149 * 359.74764 * 11 10 9 13 13 C 1.38993 * 120.26288 * 0.02562 * 12 11 10 14 14 O 1.35762 * 119.99072 * 179.97438 * 13 12 11 15 15 C 1.34826 * 117.00060 * 185.53044 * 14 13 12 16 16 H 1.07997 * 120.00198 * 4.71724 * 15 14 13 17 17 C 1.38660 * 119.99708 * 184.71619 * 15 14 13 18 18 N 1.31562 * 119.99952 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47399 * 89.99590 * 19 17 15 21 21 H 1.48497 * 109.46918 * 209.99856 * 19 17 15 22 22 H 1.48503 * 109.47053 * 329.99567 * 19 17 15 23 23 C 1.38590 * 120.02428 * 359.97438 * 13 12 11 24 24 N 1.33106 * 120.81928 * 0.25400 * 6 5 4 25 25 C 1.31487 * 121.59286 * 359.47229 * 24 6 5 26 26 H 1.07994 * 120.74205 * 359.97438 * 4 3 2 27 27 H 1.07995 * 120.33653 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99662 * 6.38297 * 7 6 5 29 29 H 1.07992 * 120.00033 * 196.34927 * 8 7 6 30 30 H 1.08005 * 120.01104 * 359.97438 * 10 9 8 31 31 H 1.08000 * 119.88179 * 179.71940 * 11 10 9 32 32 H 1.08002 * 119.86978 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99509 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.11569 * 179.97438 * 23 13 12 35 35 H 1.07994 * 119.70350 * 180.26409 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2791 -1.0780 -0.5478 5 6 4.6473 -1.0372 -0.5268 6 6 5.2913 0.0705 0.0354 7 6 6.7613 0.1202 0.0616 8 6 7.3888 1.1154 0.7123 9 6 6.6511 1.9391 1.6860 10 6 5.7178 1.3465 2.5425 11 6 5.0249 2.1217 3.4490 12 6 5.2530 3.4837 3.5184 13 6 6.1818 4.0822 2.6751 14 8 6.4011 5.4201 2.7476 15 6 7.2280 5.9556 1.8271 16 1 7.6216 5.3402 1.0317 17 6 7.5730 7.2965 1.9017 18 7 7.0931 8.0463 2.8704 19 14 8.7180 8.0386 0.6260 20 1 7.9194 8.5632 -0.5106 21 1 9.4918 9.1470 1.2406 22 1 9.6534 6.9954 0.1339 23 6 6.8841 3.3138 1.7602 24 7 4.5903 1.0772 0.5519 25 6 3.2754 1.0759 0.5451 26 1 2.7586 -1.9219 -0.9758 27 1 5.2237 -1.8517 -0.9400 28 1 7.3365 -0.6429 -0.4417 29 1 8.4335 1.3111 0.5212 30 1 5.5362 0.2831 2.4908 31 1 4.3012 1.6633 4.1066 32 1 4.7068 4.0850 4.2301 33 1 7.3342 8.9844 2.9223 34 1 7.6058 3.7774 1.1040 35 1 2.7373 1.9109 0.9688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730150832.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:48 Heat of formation + Delta-G solvation = 102.903606 kcal Electronic energy + Delta-G solvation = -21385.553552 eV Core-core repulsion = 18122.909740 eV Total energy + Delta-G solvation = -3262.643811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55336 -38.86685 -37.02624 -36.40013 -34.29294 -32.69726 -32.19414 -31.20975 -29.19310 -28.42584 -25.33357 -24.76988 -23.86491 -22.05580 -21.44543 -19.43425 -19.19685 -17.80979 -17.26865 -16.67096 -15.56990 -15.20955 -14.84505 -14.55030 -14.45037 -14.25670 -13.97048 -13.64491 -13.42144 -13.25503 -13.17549 -13.02858 -12.86417 -12.46364 -12.24681 -11.83720 -11.58432 -11.37778 -10.97321 -10.71201 -10.62973 -10.39792 -10.28238 -9.92494 -9.45127 -9.35344 -8.78524 -8.61504 -7.66799 -6.92556 -6.39461 -3.98004 0.14193 1.12804 1.61723 2.39477 2.49472 2.74670 3.06208 3.15530 3.16442 3.20191 3.67512 3.90369 4.00458 4.24743 4.49556 4.57497 4.68823 4.89416 5.10017 5.16269 5.18112 5.35258 5.48693 5.55061 5.70733 5.79500 5.86089 5.96887 6.12330 6.28303 6.35099 6.49208 6.53120 6.81397 6.93734 7.13064 7.29179 7.30829 7.41260 7.48008 7.86836 7.89195 8.05077 9.06593 9.79022 10.79070 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.003944 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.793675 B = 7097.442147 C = 7465.496489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.263 3.737 3 C -0.104 4.104 4 C -0.029 4.029 5 C -0.174 4.174 6 C 0.196 3.804 7 C -0.170 4.170 8 C -0.017 4.017 9 C -0.023 4.023 10 C -0.133 4.133 11 C -0.092 4.092 12 C -0.181 4.181 13 C 0.146 3.854 14 O -0.183 6.183 15 C -0.389 4.389 16 H 0.089 0.911 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.938 3.062 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.201 4.201 24 N -0.438 5.438 25 C 0.161 3.839 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.268 0.732 34 H 0.125 0.875 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -17.625 -6.435 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.053 4.053 3 C -0.110 4.110 4 C -0.057 4.057 5 C -0.194 4.194 6 C 0.061 3.939 7 C -0.189 4.189 8 C -0.037 4.037 9 C -0.023 4.023 10 C -0.152 4.152 11 C -0.111 4.111 12 C -0.200 4.200 13 C 0.093 3.907 14 O -0.087 6.087 15 C -0.466 4.466 16 H 0.107 0.893 17 C -0.165 4.165 18 N -0.501 5.501 19 Si 0.763 3.237 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.193 1.193 23 C -0.220 4.220 24 N -0.145 5.145 25 C -0.002 4.002 26 H 0.156 0.844 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.235 -16.511 -5.863 17.663 hybrid contribution 0.513 -0.354 -1.100 1.264 sum -1.721 -16.865 -6.963 18.326 Atomic orbital electron populations 1.81253 1.11992 1.07690 1.08878 1.25506 0.92396 0.93775 0.93585 1.17133 0.85349 0.99729 1.08790 1.21171 0.94106 0.96294 0.94096 1.21774 0.94429 0.99664 1.03532 1.20469 0.94753 0.88712 0.89923 1.21735 0.89885 1.01105 1.06166 1.22551 0.99064 0.91246 0.90844 1.18433 0.96220 0.92632 0.95009 1.20326 0.98836 0.97709 0.98369 1.20409 0.99269 0.92934 0.98468 1.20221 1.02082 0.94499 1.03210 1.19202 0.93174 0.84993 0.93326 1.84004 1.59194 1.15282 1.50265 1.21252 1.25753 0.93868 1.05680 0.89312 1.25240 0.97994 0.95370 0.97933 1.70040 1.42299 1.07025 1.30732 0.85761 0.79464 0.78985 0.79500 1.19989 1.20351 1.19272 1.21235 1.04613 0.92881 1.03290 1.68935 1.06558 1.25609 1.13380 1.23109 0.90074 0.95092 0.91903 0.84366 0.84067 0.84796 0.85502 0.88801 0.87572 0.86949 0.92165 0.85686 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.26 3.07 15.36 -22.47 -0.35 2.72 16 3 C -0.10 -1.07 5.76 -106.61 -0.61 -1.69 16 4 C -0.03 -0.24 9.84 -39.28 -0.39 -0.63 16 5 C -0.17 -1.45 9.76 -39.44 -0.38 -1.84 16 6 C 0.20 2.23 5.61 -83.09 -0.47 1.76 16 7 C -0.17 -1.81 9.68 -37.32 -0.36 -2.18 16 8 C -0.02 -0.23 9.80 -37.22 -0.36 -0.59 16 9 C -0.02 -0.38 4.45 -105.08 -0.47 -0.85 16 10 C -0.13 -2.14 6.43 -39.09 -0.25 -2.40 16 11 C -0.09 -1.58 10.02 -39.68 -0.40 -1.97 16 12 C -0.18 -3.70 9.98 -39.29 -0.39 -4.10 16 13 C 0.15 3.42 6.64 -39.17 -0.26 3.16 16 14 O -0.18 -5.16 9.76 0.02 0.00 -5.16 16 15 C -0.39 -10.74 9.45 30.89 0.29 -10.45 16 16 H 0.09 2.26 5.27 -52.49 -0.28 1.99 16 17 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 18 N -0.87 -25.37 13.67 55.48 0.76 -24.61 16 19 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.20 -4.16 8.88 -38.93 -0.35 -4.50 16 24 N -0.44 -5.99 5.20 -9.58 -0.05 -6.04 16 25 C 0.16 1.94 10.92 -17.12 -0.19 1.76 16 26 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 27 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.09 1.37 6.87 -52.48 -0.36 1.01 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.13 2.62 5.69 -52.48 -0.30 2.32 16 35 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -32.00 318.66 -6.80 -38.80 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.03 Total: 2.72 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -5.03 Total: -20.83 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 1.48 Total: -35.71 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.00 -6.80 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730150832.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.701 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds