Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40324 * 120.42225 * 26.91969 * 3 2 1 5 5 C 1.36902 * 118.52609 * 180.02562 * 4 3 2 6 6 C 1.39919 * 119.32108 * 359.97438 * 5 4 3 7 7 C 1.47111 * 119.59254 * 179.97438 * 6 5 4 8 8 C 1.34441 * 120.00228 * 186.39612 * 7 6 5 9 9 C 1.47335 * 119.99991 * 16.34989 * 8 7 6 10 10 C 1.39848 * 120.13178 * 39.28432 * 9 8 7 11 11 C 1.37948 * 119.97049 * 180.27461 * 10 9 8 12 12 C 1.38270 * 120.24149 * 359.74764 * 11 10 9 13 13 C 1.38993 * 120.26288 * 0.02562 * 12 11 10 14 14 O 1.35762 * 119.99072 * 179.97438 * 13 12 11 15 15 C 1.34826 * 117.00060 * 185.53044 * 14 13 12 16 16 H 1.07997 * 120.00198 * 4.71724 * 15 14 13 17 17 C 1.38660 * 119.99708 * 184.71619 * 15 14 13 18 18 N 1.31562 * 119.99952 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47399 * 89.99590 * 19 17 15 21 21 H 1.48497 * 109.46918 * 209.99856 * 19 17 15 22 22 H 1.48503 * 109.47053 * 329.99567 * 19 17 15 23 23 C 1.38590 * 120.02428 * 359.97438 * 13 12 11 24 24 N 1.33106 * 120.81928 * 0.25400 * 6 5 4 25 25 C 1.31487 * 121.59286 * 359.47229 * 24 6 5 26 26 H 1.07994 * 120.74205 * 359.97438 * 4 3 2 27 27 H 1.07995 * 120.33653 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99662 * 6.38297 * 7 6 5 29 29 H 1.07992 * 120.00033 * 196.34927 * 8 7 6 30 30 H 1.08005 * 120.01104 * 359.97438 * 10 9 8 31 31 H 1.08000 * 119.88179 * 179.71940 * 11 10 9 32 32 H 1.08002 * 119.86978 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99509 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.11569 * 179.97438 * 23 13 12 35 35 H 1.07994 * 119.70350 * 180.26409 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2791 -1.0780 -0.5478 5 6 4.6473 -1.0372 -0.5268 6 6 5.2913 0.0705 0.0354 7 6 6.7613 0.1202 0.0616 8 6 7.3888 1.1154 0.7123 9 6 6.6511 1.9391 1.6860 10 6 5.7178 1.3465 2.5425 11 6 5.0249 2.1217 3.4490 12 6 5.2530 3.4837 3.5184 13 6 6.1818 4.0822 2.6751 14 8 6.4011 5.4201 2.7476 15 6 7.2280 5.9556 1.8271 16 1 7.6216 5.3402 1.0317 17 6 7.5730 7.2965 1.9017 18 7 7.0931 8.0463 2.8704 19 14 8.7180 8.0386 0.6260 20 1 7.9194 8.5632 -0.5106 21 1 9.4918 9.1470 1.2406 22 1 9.6534 6.9954 0.1339 23 6 6.8841 3.3138 1.7602 24 7 4.5903 1.0772 0.5519 25 6 3.2754 1.0759 0.5451 26 1 2.7586 -1.9219 -0.9758 27 1 5.2237 -1.8517 -0.9400 28 1 7.3365 -0.6429 -0.4417 29 1 8.4335 1.3111 0.5212 30 1 5.5362 0.2831 2.4908 31 1 4.3012 1.6633 4.1066 32 1 4.7068 4.0850 4.2301 33 1 7.3342 8.9844 2.9223 34 1 7.6058 3.7774 1.1040 35 1 2.7373 1.9109 0.9688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730150832.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = 84.612425 kcal Electronic energy + Delta-G solvation = -21386.346717 eV Core-core repulsion = 18122.909740 eV Total energy + Delta-G solvation = -3263.436976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46888 -40.46303 -38.37205 -37.63214 -35.42298 -34.15169 -33.51496 -32.29542 -30.60009 -29.81961 -27.25096 -25.76233 -24.74822 -23.29626 -23.03342 -20.64386 -20.05176 -19.60524 -18.61309 -17.76635 -16.77865 -16.67342 -16.22012 -16.00478 -15.48203 -15.37373 -15.27808 -15.05694 -14.69548 -14.46788 -14.29631 -14.06107 -14.01024 -13.69636 -13.50929 -13.40836 -12.91675 -12.77217 -12.49497 -12.18791 -12.15128 -12.04422 -11.20296 -11.13102 -10.90616 -10.68558 -10.34135 -9.77277 -9.04541 -8.40770 -8.38987 -6.07409 -0.74807 0.32804 0.48400 0.95934 1.36423 1.41718 1.52899 1.54208 1.55335 2.12535 2.21836 2.78347 2.95919 3.05524 3.35178 3.43200 3.64165 3.74183 3.84947 4.06948 4.18556 4.25592 4.40281 4.41601 4.65944 4.71479 4.82152 4.83797 5.05906 5.08999 5.15964 5.20337 5.34501 5.45200 5.59540 5.69731 5.79401 5.84771 6.00592 6.11356 6.36785 6.37626 7.03484 7.04833 7.90765 8.83420 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.003944 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.793675 B = 7097.442147 C = 7465.496489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.284 3.716 3 C -0.097 4.097 4 C -0.018 4.018 5 C -0.145 4.145 6 C 0.165 3.835 7 C -0.122 4.122 8 C -0.067 4.067 9 C -0.004 4.004 10 C -0.108 4.108 11 C -0.085 4.085 12 C -0.202 4.202 13 C 0.105 3.895 14 O -0.241 6.241 15 C -0.406 4.406 16 H 0.099 0.901 17 C -0.027 4.027 18 N -0.926 5.926 19 Si 1.016 2.984 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.250 1.250 23 C -0.219 4.219 24 N -0.479 5.479 25 C 0.145 3.855 26 H 0.174 0.826 27 H 0.186 0.814 28 H 0.183 0.817 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.101 0.899 33 H 0.270 0.730 34 H 0.113 0.887 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -22.562 -9.135 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.031 4.031 3 C -0.103 4.103 4 C -0.045 4.045 5 C -0.165 4.165 6 C 0.031 3.969 7 C -0.140 4.140 8 C -0.087 4.087 9 C -0.004 4.004 10 C -0.127 4.127 11 C -0.103 4.103 12 C -0.221 4.221 13 C 0.056 3.944 14 O -0.149 6.149 15 C -0.482 4.482 16 H 0.116 0.884 17 C -0.223 4.223 18 N -0.565 5.565 19 Si 0.835 3.165 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.173 1.173 23 C -0.239 4.239 24 N -0.187 5.187 25 C -0.017 4.017 26 H 0.191 0.809 27 H 0.204 0.796 28 H 0.200 0.800 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.437 -21.515 -8.565 23.202 hybrid contribution 0.048 0.689 -0.353 0.776 sum -1.389 -20.826 -8.918 22.698 Atomic orbital electron populations 1.81284 1.13246 1.09054 1.10292 1.25661 0.92492 0.92546 0.92399 1.17138 0.84390 1.00063 1.08697 1.21604 0.94302 0.96079 0.92499 1.22171 0.94453 0.99131 1.00705 1.20869 0.95251 0.89552 0.91278 1.22310 0.89676 0.99471 1.02569 1.22532 1.00124 0.92916 0.93137 1.18820 0.95221 0.91242 0.95160 1.20669 0.96929 0.98833 0.96298 1.20727 0.99477 0.91337 0.98784 1.20373 1.02274 0.96154 1.03315 1.19733 0.95064 0.84076 0.95493 1.83949 1.61203 1.17949 1.51795 1.21745 1.25640 0.94615 1.06206 0.88392 1.26544 0.99814 0.95528 1.00412 1.70200 1.45166 1.07445 1.33706 0.84627 0.77227 0.78241 0.76386 1.19140 1.19741 1.17344 1.21260 1.04871 0.94652 1.03102 1.68736 1.07303 1.27409 1.15203 1.22932 0.89958 0.95719 0.93083 0.80865 0.79632 0.79973 0.83731 0.85855 0.84464 0.88066 0.92113 0.86944 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.21 18.54 19.01 0.35 -11.86 16 2 C 0.28 6.03 15.36 88.33 1.36 7.39 16 3 C -0.10 -1.68 5.76 -21.15 -0.12 -1.81 16 4 C -0.02 -0.19 9.84 22.46 0.22 0.03 16 5 C -0.15 -1.41 9.76 22.36 0.22 -1.20 16 6 C 0.16 2.92 5.61 41.69 0.23 3.15 16 7 C -0.12 -1.92 9.68 23.73 0.23 -1.69 16 8 C -0.07 -1.55 9.80 23.80 0.23 -1.32 16 9 C 0.00 -0.14 4.45 -20.16 -0.09 -0.22 16 10 C -0.11 -3.28 6.43 22.59 0.15 -3.14 16 11 C -0.09 -2.87 10.02 22.21 0.22 -2.65 16 12 C -0.20 -8.81 9.98 22.46 0.22 -8.58 16 13 C 0.11 5.34 6.64 22.53 0.15 5.49 16 14 O -0.24 -14.88 9.76 -22.84 -0.22 -15.10 16 15 C -0.41 -24.04 9.45 67.92 0.64 -23.40 16 16 H 0.10 5.33 5.27 -2.91 -0.02 5.32 16 17 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 18 N -0.93 -58.14 13.67 21.62 0.30 -57.84 16 19 Si 1.02 43.53 29.55 68.60 2.03 45.55 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 23 C -0.22 -9.51 8.88 22.69 0.20 -9.31 16 24 N -0.48 -11.89 5.20 -184.23 -0.96 -12.85 16 25 C 0.15 3.27 10.92 85.12 0.93 4.20 16 26 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 27 H 0.19 0.28 8.06 -2.91 -0.02 0.25 16 28 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.12 3.08 6.87 -2.91 -0.02 3.06 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 32 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.11 5.02 5.69 -2.91 -0.02 5.01 16 35 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -79.22 318.66 7.89 -71.33 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.13 Total: 14.87 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 5.26 Total: -34.10 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -0.31 Total: -82.55 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.22 Total: -15.10 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -79.22 7.89 -71.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730150832.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.946 kcal (2) G-P(sol) polarization free energy of solvation -79.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds