Wall clock time and date at job start Tue Mar 31 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99966 * 2 1 4 4 C 1.53001 * 109.47113 * 124.99967 * 3 2 1 5 5 H 1.09007 * 109.47145 * 304.99335 * 4 3 2 6 6 N 1.46497 * 109.47313 * 65.00231 * 4 3 2 7 7 C 1.34777 * 119.99525 * 274.99614 * 6 4 3 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 4 10 10 S 1.80997 * 109.47151 * 180.27780 * 9 7 6 11 11 C 1.76196 * 100.00314 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00018 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00626 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99674 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00584 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47157 * 59.99781 * 15 13 11 17 17 H 1.48496 * 109.47271 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46802 * 300.00045 * 15 13 11 19 19 C 1.50707 * 109.47112 * 185.00189 * 4 3 2 20 20 C 1.38650 * 120.78565 * 279.72054 * 19 4 3 21 21 C 1.38208 * 119.15670 * 179.75545 * 20 19 4 22 22 N 1.31869 * 120.76796 * 0.53048 * 21 20 19 23 23 C 1.31874 * 121.72155 * 359.73757 * 22 21 20 24 24 C 1.38202 * 120.76850 * 359.97438 * 23 22 21 25 25 H 1.08000 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99630 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00186 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47193 * 5.00125 * 3 2 1 29 29 H 1.09001 * 109.47622 * 244.99576 * 3 2 1 30 30 H 0.97000 * 120.00580 * 95.00360 * 6 4 3 31 31 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 32 32 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 33 33 H 0.97003 * 120.00297 * 179.97438 * 14 13 11 34 34 H 1.07999 * 120.41970 * 359.97438 * 20 19 4 35 35 H 1.08003 * 119.61474 * 180.24793 * 21 20 19 36 36 H 1.08001 * 119.61295 * 180.02562 * 23 22 21 37 37 H 1.07997 * 120.42150 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4882 1.1470 2.1061 6 7 4.0547 0.2970 1.0002 7 6 3.8093 -0.9670 1.3986 8 8 2.7442 -1.2467 1.9069 9 6 4.8558 -2.0342 1.2064 10 16 4.2288 -3.6133 1.8301 11 6 5.6131 -4.6486 1.4886 12 1 6.4961 -4.2340 1.0251 13 6 5.5693 -5.9966 1.8163 14 7 4.4936 -6.5016 2.3826 15 14 7.0371 -7.0940 1.4549 16 1 8.2265 -6.5860 2.1846 17 1 6.7400 -8.4799 1.8978 18 1 7.3119 -7.0883 -0.0044 19 6 3.6990 2.6841 1.2542 20 6 4.7685 2.9944 0.4282 21 6 5.3490 4.2453 0.5195 22 7 4.9036 5.1341 1.3860 23 6 3.8923 4.8716 2.1906 24 6 3.2584 3.6441 2.1522 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6214 1.4027 -0.9313 30 1 4.9064 0.5205 0.5934 31 1 5.0876 -2.1288 0.1454 32 1 5.7585 -1.7605 1.7525 33 1 4.4628 -7.4438 2.6113 34 1 5.1410 2.2690 -0.2799 35 1 6.1799 4.4963 -0.1231 36 1 3.5550 5.6250 2.8871 37 1 2.4309 3.4351 2.8141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734457507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:42 Heat of formation + Delta-G solvation = -6.578793 kcal Electronic energy + Delta-G solvation = -20074.397290 eV Core-core repulsion = 16942.449917 eV Total energy + Delta-G solvation = -3131.947373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58472 -40.47857 -37.41516 -34.88437 -34.58595 -33.51766 -32.12979 -31.04074 -29.16181 -27.64801 -25.52401 -24.51239 -22.63717 -21.52516 -20.79336 -19.85388 -18.27351 -17.94397 -17.11052 -16.88886 -16.85938 -16.61597 -16.36758 -15.80013 -15.74161 -14.87181 -14.78586 -14.55431 -14.48544 -14.41719 -13.90611 -13.67238 -13.35019 -13.16838 -12.87394 -12.69456 -12.63436 -12.26993 -11.85175 -11.72242 -11.13072 -11.06016 -10.63547 -10.54501 -10.46069 -10.27559 -10.08767 -9.84766 -8.65662 -8.34919 -6.12330 0.18208 0.20198 1.26673 1.43336 1.43966 1.47211 1.56256 1.62285 2.22989 2.28481 2.87104 2.99297 3.31120 3.33399 3.61986 3.83642 3.93257 4.03784 4.13799 4.18870 4.23709 4.26032 4.33276 4.48036 4.51617 4.68813 4.72951 4.88419 4.94006 4.97041 5.09522 5.23830 5.41350 5.46999 5.75044 5.77411 5.96016 6.19134 6.45686 7.02990 7.06605 7.23252 8.73846 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003464 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.372513 B = 8081.857647 C = 8979.941264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.088 4.088 4 C 0.195 3.805 5 H 0.083 0.917 6 N -0.710 5.710 7 C 0.537 3.463 8 O -0.546 6.546 9 C -0.132 4.132 10 S -0.144 6.144 11 C -0.549 4.549 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.996 3.004 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.262 1.262 19 C -0.051 4.051 20 C -0.165 4.165 21 C 0.095 3.905 22 N -0.511 5.511 23 C 0.094 3.906 24 C -0.164 4.164 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.413 0.587 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.271 0.729 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 22.566 -5.990 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.171 4.171 3 C -0.126 4.126 4 C 0.091 3.909 5 H 0.101 0.899 6 N -0.365 5.365 7 C 0.323 3.677 8 O -0.422 6.422 9 C -0.283 4.283 10 S 0.083 5.917 11 C -0.697 4.697 12 H 0.100 0.900 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.059 4.059 20 C -0.185 4.185 21 C -0.061 4.061 22 N -0.221 5.221 23 C -0.062 4.062 24 C -0.184 4.184 25 H 0.134 0.866 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.251 0.749 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.173 0.827 35 H 0.196 0.804 36 H 0.195 0.805 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.298 22.788 -5.028 23.372 hybrid contribution 1.652 -1.591 -0.698 2.398 sum 0.354 21.197 -5.726 21.960 Atomic orbital electron populations 1.23864 0.95758 1.02073 1.01994 1.23000 0.96594 0.98467 0.99079 1.21143 0.97852 0.95430 0.98168 1.19727 0.88292 0.83113 0.99800 0.89884 1.45848 1.19751 1.07131 1.63743 1.19938 0.87349 0.83342 0.77116 1.90724 1.26533 1.81523 1.43461 1.23388 1.01415 0.97353 1.06154 1.85529 1.25423 0.99914 1.80860 1.23190 1.02597 0.96695 1.47187 0.89985 1.26100 1.00093 0.98786 0.94061 1.70172 1.29822 1.14563 1.40191 0.85032 0.77436 0.76514 0.79212 1.18707 1.20463 1.18629 1.20275 0.95587 0.94596 0.95486 1.22178 0.96666 0.99116 1.00510 1.23182 0.98668 0.89172 0.95087 1.67726 1.12996 1.35637 1.05728 1.23143 0.91011 0.95861 0.96164 1.22241 1.02246 0.94517 0.99421 0.86610 0.89702 0.89769 0.88773 0.89189 0.74861 0.87294 0.87557 0.92011 0.82735 0.80374 0.80529 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.07 14.32 67.78 0.97 -4.10 16 2 C -0.15 -4.21 7.95 25.65 0.20 -4.00 16 3 C -0.09 -1.72 5.32 29.85 0.16 -1.56 16 4 C 0.20 4.04 2.49 44.25 0.11 4.15 16 5 H 0.08 2.11 7.48 -2.38 -0.02 2.09 16 6 N -0.71 -16.45 5.00 -446.08 -2.23 -18.68 16 7 C 0.54 18.44 6.63 87.66 0.58 19.03 16 8 O -0.55 -23.30 13.04 -3.04 -0.04 -23.34 16 9 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 10 S -0.14 -7.84 20.57 -56.49 -1.16 -9.00 16 11 C -0.55 -30.98 9.50 67.95 0.65 -30.33 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.82 5.49 84.86 0.47 1.28 16 14 N -0.91 -55.63 13.22 21.65 0.29 -55.35 16 15 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 16 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 C -0.05 -0.83 4.98 -19.66 -0.10 -0.93 16 20 C -0.16 -2.24 9.16 22.36 0.20 -2.04 16 21 C 0.10 1.38 11.18 84.68 0.95 2.32 16 22 N -0.51 -9.23 10.36 -195.84 -2.03 -11.26 16 23 C 0.09 1.44 11.18 84.68 0.95 2.39 16 24 C -0.16 -2.50 9.78 22.36 0.22 -2.29 16 25 H 0.12 2.26 7.84 -2.91 -0.02 2.24 16 26 H 0.08 2.31 8.06 -2.91 -0.02 2.29 16 27 H 0.08 2.96 5.70 -2.91 -0.02 2.94 16 28 H 0.09 1.51 7.79 -2.38 -0.02 1.49 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.41 6.96 6.94 -92.71 -0.64 6.31 16 31 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 32 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.16 1.41 7.00 -2.91 -0.02 1.39 16 35 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -75.76 332.73 3.08 -72.68 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.44 Total: 20.36 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.79 Total: -20.66 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -3.97 Total: -85.29 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.04 Total: -23.34 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Total: -75.76 3.08 -72.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734457507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.101 kcal (2) G-P(sol) polarization free energy of solvation -75.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds