Wall clock time and date at job start Tue Mar 31 2020 06:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99945 * 2 1 4 4 C 1.53002 * 109.47140 * 125.00284 * 3 2 1 5 5 H 1.08999 * 109.47329 * 54.99783 * 4 3 2 6 6 N 1.46505 * 109.47054 * 294.99713 * 4 3 2 7 7 C 1.34781 * 120.00080 * 84.99902 * 6 4 3 8 8 O 1.21285 * 119.99628 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99765 * 180.02562 * 7 6 4 10 10 S 1.81007 * 109.46669 * 180.02562 * 9 7 6 11 11 C 1.76197 * 99.99600 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00631 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99905 * 179.97438 * 11 10 9 14 14 N 1.31635 * 119.99849 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00350 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47371 * 89.99791 * 15 13 11 17 17 H 1.48503 * 109.47592 * 210.00036 * 15 13 11 18 18 H 1.48507 * 109.47136 * 330.00259 * 15 13 11 19 19 C 1.50703 * 109.47023 * 174.99900 * 4 3 2 20 20 C 1.38651 * 120.78915 * 79.97483 * 19 4 3 21 21 C 1.38203 * 119.16168 * 179.97438 * 20 19 4 22 22 N 1.31874 * 120.76322 * 0.02562 * 21 20 19 23 23 C 1.31870 * 121.72652 * 0.02562 * 22 21 20 24 24 C 1.38201 * 120.76299 * 359.97438 * 23 22 21 25 25 H 1.07998 * 120.00227 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99963 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00385 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47360 * 5.00121 * 3 2 1 29 29 H 1.09007 * 109.47168 * 244.99731 * 3 2 1 30 30 H 0.96997 * 119.99754 * 265.00473 * 6 4 3 31 31 H 1.09005 * 109.47206 * 299.99683 * 9 7 6 32 32 H 1.08992 * 109.47310 * 60.00025 * 9 7 6 33 33 H 0.96995 * 119.99881 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.42195 * 0.04071 * 20 19 4 35 35 H 1.07996 * 119.61854 * 180.30069 * 21 20 19 36 36 H 1.08001 * 119.61693 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.41815 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1403 6 7 2.2786 1.3224 2.4362 7 6 1.8698 0.1527 2.9667 8 8 2.1287 -0.8909 2.4056 9 6 1.0912 0.1418 4.2569 10 16 0.6916 -1.5656 4.7058 11 6 -0.1907 -1.2889 6.2056 12 1 -0.3337 -0.2825 6.5704 13 6 -0.7021 -2.3645 6.9185 14 7 -0.5284 -3.5912 6.4737 15 14 -1.6369 -2.0714 8.5089 16 1 -3.0817 -1.9020 8.2100 17 1 -1.4517 -3.2344 9.4136 18 1 -1.1207 -0.8446 9.1676 19 6 3.8748 2.5826 1.1120 20 6 3.3738 3.7996 1.5483 21 6 4.1733 4.9242 1.4696 22 7 5.3979 4.8486 0.9863 23 6 5.9067 3.7086 0.5614 24 6 5.1663 2.5427 0.6092 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 2.0719 2.1571 2.8850 31 1 1.6908 0.5940 5.0469 32 1 0.1697 0.7097 4.1299 33 1 -0.8854 -4.3429 6.9720 34 1 2.3719 3.8677 1.9457 35 1 3.7923 5.8749 1.8118 36 1 6.9136 3.6859 0.1715 37 1 5.5886 1.6121 0.2601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734457508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:44 Heat of formation + Delta-G solvation = 14.601917 kcal Electronic energy + Delta-G solvation = -20149.876031 eV Core-core repulsion = 17018.847123 eV Total energy + Delta-G solvation = -3131.028908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73585 -39.26203 -36.32810 -33.75184 -32.53740 -32.43720 -31.48696 -29.74149 -28.03664 -25.50446 -24.61291 -23.84673 -21.70544 -20.25316 -19.73305 -18.03789 -17.24057 -16.80305 -16.00041 -15.91686 -15.67422 -15.21126 -14.81991 -14.51015 -14.19794 -14.00059 -13.85768 -13.64433 -13.43946 -13.09747 -12.58705 -12.27234 -11.96108 -11.88685 -11.55669 -11.07858 -11.04054 -10.86231 -10.77402 -9.98342 -9.84585 -9.78303 -9.48272 -9.42596 -9.37058 -9.07933 -8.72249 -8.25654 -6.51148 -6.23427 -3.93643 0.82526 0.88842 2.53435 2.98245 3.07449 3.21069 3.26313 3.30043 3.51359 3.68438 4.14909 4.18575 4.19541 4.49880 4.74844 4.84593 4.94680 5.00427 5.11941 5.14583 5.29605 5.31728 5.41807 5.48891 5.52691 5.65234 5.67812 5.78872 5.86605 6.02701 6.11728 6.21293 6.37413 6.54679 6.89332 6.99978 7.57921 7.63469 7.66625 8.33523 8.57987 9.22145 10.83963 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.003464 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.520848 B = 8080.933639 C = 8767.189418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.097 4.097 4 C 0.190 3.810 5 H 0.103 0.897 6 N -0.733 5.733 7 C 0.537 3.463 8 O -0.508 6.508 9 C -0.153 4.153 10 S -0.057 6.057 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.042 4.042 20 C -0.167 4.167 21 C 0.102 3.898 22 N -0.488 5.488 23 C 0.101 3.899 24 C -0.161 4.161 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.396 0.604 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 15.175 -12.700 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.156 4.156 3 C -0.135 4.135 4 C 0.084 3.916 5 H 0.120 0.880 6 N -0.388 5.388 7 C 0.323 3.677 8 O -0.381 6.381 9 C -0.304 4.304 10 S 0.170 5.830 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.051 4.051 20 C -0.187 4.187 21 C -0.055 4.055 22 N -0.197 5.197 23 C -0.056 4.056 24 C -0.181 4.181 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.899 13.973 -13.638 21.458 hybrid contribution -1.598 1.026 2.025 2.777 sum 7.301 14.999 -11.613 20.326 Atomic orbital electron populations 1.23724 0.95930 1.01469 1.01900 1.22789 0.96030 0.97786 0.99035 1.21181 0.98126 0.96879 0.97323 1.19743 0.91983 0.95066 0.84795 0.87959 1.46095 1.58575 1.09419 1.24744 1.20226 0.78662 0.83031 0.85743 1.90679 1.54618 1.31394 1.61456 1.23527 1.01802 1.08596 0.96473 1.85356 1.71149 0.97300 1.29189 1.22872 1.40701 0.95744 1.09128 0.90985 1.24986 0.95879 0.94428 0.98252 1.70015 1.43351 0.98188 1.38744 0.86178 0.79764 0.78010 0.81610 1.20265 1.20743 1.19694 1.20429 0.94337 0.95059 0.95231 1.21984 1.01706 0.93175 1.01856 1.22765 0.89528 0.98423 0.94783 1.67689 1.13506 1.28532 1.09990 1.22779 0.99841 0.87657 0.95299 1.22062 0.94260 1.00607 1.01206 0.88357 0.89423 0.86543 0.91268 0.90300 0.76891 0.89402 0.89344 0.92185 0.84741 0.82619 0.82570 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 14.32 29.02 0.42 -2.23 16 2 C -0.14 -1.86 6.95 -36.02 -0.25 -2.11 16 3 C -0.10 -1.02 5.32 -27.88 -0.15 -1.17 16 4 C 0.19 2.09 2.49 -69.08 -0.17 1.92 16 5 H 0.10 1.28 7.48 -51.93 -0.39 0.89 16 6 N -0.73 -9.26 5.00 -54.93 -0.27 -9.53 16 7 C 0.54 9.44 7.16 -10.99 -0.08 9.36 16 8 O -0.51 -10.55 13.24 5.55 0.07 -10.48 16 9 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 11 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 15 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.04 -0.39 4.98 -104.32 -0.52 -0.91 16 20 C -0.17 -1.40 9.15 -39.44 -0.36 -1.77 16 21 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 22 N -0.49 -4.96 10.36 -13.25 -0.14 -5.10 16 23 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 24 C -0.16 -1.38 9.78 -39.44 -0.39 -1.77 16 25 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.09 1.07 7.84 -52.49 -0.41 0.66 16 27 H 0.12 1.76 7.53 -52.49 -0.40 1.37 16 28 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 29 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.40 4.04 6.95 -40.82 -0.28 3.76 16 31 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.13 0.90 7.01 -52.49 -0.37 0.53 16 35 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -33.95 334.32 -8.03 -41.98 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.76 Total: 3.74 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.47 Total: -12.96 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.32 Total: -39.87 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.95 -8.03 -41.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734457508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.583 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds