Wall clock time and date at job start Tue Mar 31 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99945 * 2 1 4 4 C 1.53002 * 109.47140 * 125.00284 * 3 2 1 5 5 H 1.08999 * 109.47329 * 54.99783 * 4 3 2 6 6 N 1.46505 * 109.47054 * 294.99713 * 4 3 2 7 7 C 1.34781 * 120.00080 * 84.99902 * 6 4 3 8 8 O 1.21285 * 119.99628 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99765 * 180.02562 * 7 6 4 10 10 S 1.81007 * 109.46669 * 180.02562 * 9 7 6 11 11 C 1.76197 * 99.99600 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00631 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99905 * 179.97438 * 11 10 9 14 14 N 1.31635 * 119.99849 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00350 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47371 * 89.99791 * 15 13 11 17 17 H 1.48503 * 109.47592 * 210.00036 * 15 13 11 18 18 H 1.48507 * 109.47136 * 330.00259 * 15 13 11 19 19 C 1.50703 * 109.47023 * 174.99900 * 4 3 2 20 20 C 1.38651 * 120.78915 * 79.97483 * 19 4 3 21 21 C 1.38203 * 119.16168 * 179.97438 * 20 19 4 22 22 N 1.31874 * 120.76322 * 0.02562 * 21 20 19 23 23 C 1.31870 * 121.72652 * 0.02562 * 22 21 20 24 24 C 1.38201 * 120.76299 * 359.97438 * 23 22 21 25 25 H 1.07998 * 120.00227 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99963 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00385 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47360 * 5.00121 * 3 2 1 29 29 H 1.09007 * 109.47168 * 244.99731 * 3 2 1 30 30 H 0.96997 * 119.99754 * 265.00473 * 6 4 3 31 31 H 1.09005 * 109.47206 * 299.99683 * 9 7 6 32 32 H 1.08992 * 109.47310 * 60.00025 * 9 7 6 33 33 H 0.96995 * 119.99881 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.42195 * 0.04071 * 20 19 4 35 35 H 1.07996 * 119.61854 * 180.30069 * 21 20 19 36 36 H 1.08001 * 119.61693 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.41815 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1403 6 7 2.2786 1.3224 2.4362 7 6 1.8698 0.1527 2.9667 8 8 2.1287 -0.8909 2.4056 9 6 1.0912 0.1418 4.2569 10 16 0.6916 -1.5656 4.7058 11 6 -0.1907 -1.2889 6.2056 12 1 -0.3337 -0.2825 6.5704 13 6 -0.7021 -2.3645 6.9185 14 7 -0.5284 -3.5912 6.4737 15 14 -1.6369 -2.0714 8.5089 16 1 -3.0817 -1.9020 8.2100 17 1 -1.4517 -3.2344 9.4136 18 1 -1.1207 -0.8446 9.1676 19 6 3.8748 2.5826 1.1120 20 6 3.3738 3.7996 1.5483 21 6 4.1733 4.9242 1.4696 22 7 5.3979 4.8486 0.9863 23 6 5.9067 3.7086 0.5614 24 6 5.1663 2.5427 0.6092 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 2.0719 2.1571 2.8850 31 1 1.6908 0.5940 5.0469 32 1 0.1697 0.7097 4.1299 33 1 -0.8854 -4.3429 6.9720 34 1 2.3719 3.8677 1.9457 35 1 3.7923 5.8749 1.8118 36 1 6.9136 3.6859 0.1715 37 1 5.5886 1.6121 0.2601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734457508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:43 Heat of formation + Delta-G solvation = -7.631917 kcal Electronic energy + Delta-G solvation = -20150.840163 eV Core-core repulsion = 17018.847123 eV Total energy + Delta-G solvation = -3131.993040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54729 -40.41688 -37.41811 -34.81498 -34.58121 -33.51641 -32.12452 -31.01694 -29.20432 -27.64582 -25.46475 -24.51036 -22.61609 -21.47817 -20.79700 -19.85056 -18.30981 -17.93004 -16.97062 -16.87854 -16.77388 -16.55543 -16.37026 -16.06361 -15.32923 -15.01367 -14.71850 -14.61583 -14.52994 -14.42116 -14.22858 -13.38709 -13.16041 -13.12973 -12.89322 -12.73865 -12.61167 -12.39810 -11.88815 -11.71847 -11.14150 -10.94123 -10.62443 -10.58090 -10.44794 -10.26168 -10.07879 -9.82033 -8.64279 -8.34700 -6.11460 0.19105 0.20749 1.27711 1.41878 1.45944 1.47643 1.57567 1.67492 2.24468 2.29621 2.87543 2.99555 3.32617 3.34973 3.62393 3.83080 3.94844 4.08360 4.09319 4.19898 4.23991 4.31825 4.40503 4.47271 4.51597 4.68415 4.70052 4.88802 4.93497 4.98312 5.11651 5.25391 5.41968 5.49074 5.75704 5.80506 5.94960 6.19735 6.48392 7.03526 7.07031 7.27049 8.74295 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.003464 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.520848 B = 8080.933639 C = 8767.189418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.089 4.089 4 C 0.195 3.805 5 H 0.086 0.914 6 N -0.710 5.710 7 C 0.540 3.460 8 O -0.546 6.546 9 C -0.131 4.131 10 S -0.142 6.142 11 C -0.548 4.548 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.996 3.004 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.259 1.259 19 C -0.050 4.050 20 C -0.165 4.165 21 C 0.095 3.905 22 N -0.512 5.512 23 C 0.094 3.906 24 C -0.164 4.164 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.412 0.588 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.271 0.729 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 17.992 -12.298 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.158 4.158 3 C -0.127 4.127 4 C 0.090 3.910 5 H 0.104 0.896 6 N -0.365 5.365 7 C 0.326 3.674 8 O -0.423 6.423 9 C -0.283 4.283 10 S 0.085 5.915 11 C -0.696 4.696 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.182 1.182 19 C -0.059 4.059 20 C -0.185 4.185 21 C -0.062 4.062 22 N -0.221 5.221 23 C -0.062 4.062 24 C -0.184 4.184 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.250 0.750 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.195 0.805 36 H 0.195 0.805 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.883 16.846 -13.253 23.202 hybrid contribution -1.504 0.227 1.805 2.360 sum 7.380 17.073 -11.447 21.840 Atomic orbital electron populations 1.23787 0.96162 1.01630 1.02595 1.22852 0.96080 0.98408 0.98503 1.21156 0.98141 0.95441 0.97956 1.19720 0.91841 0.95590 0.83819 0.89607 1.45827 1.57223 1.08455 1.25014 1.19864 0.78608 0.83848 0.85074 1.90684 1.56237 1.33087 1.62255 1.23373 1.03291 1.03424 0.98181 1.85506 1.71718 1.04401 1.29877 1.23217 1.40680 0.96316 1.09348 0.90096 1.26093 0.96768 0.93991 1.02196 1.70176 1.44692 0.99315 1.40553 0.84987 0.78297 0.78336 0.76581 1.19318 1.20349 1.18246 1.20276 0.94538 0.94465 0.96613 1.22169 1.02496 0.92570 1.01267 1.23170 0.89150 0.99489 0.94352 1.67722 1.14408 1.29322 1.10685 1.23147 1.00784 0.87271 0.95018 1.22247 0.94005 1.01288 1.00839 0.90113 0.87466 0.89018 0.89723 0.88281 0.75039 0.87765 0.87562 0.92027 0.82859 0.80453 0.80535 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.58 14.32 67.78 0.97 -4.61 16 2 C -0.14 -3.74 6.95 25.65 0.18 -3.56 16 3 C -0.09 -1.69 5.32 29.85 0.16 -1.53 16 4 C 0.20 3.94 2.49 44.25 0.11 4.05 16 5 H 0.09 2.09 7.48 -2.39 -0.02 2.07 16 6 N -0.71 -16.46 5.00 -446.08 -2.23 -18.69 16 7 C 0.54 18.59 7.16 87.65 0.63 19.22 16 8 O -0.55 -23.12 13.24 -3.04 -0.04 -23.16 16 9 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 10 S -0.14 -7.73 20.57 -56.49 -1.16 -8.90 16 11 C -0.55 -31.01 9.50 67.96 0.65 -30.36 16 12 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 13 C 0.01 0.81 5.49 84.86 0.47 1.28 16 14 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 15 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 19 C -0.05 -0.81 4.98 -19.67 -0.10 -0.91 16 20 C -0.17 -2.25 9.15 22.36 0.20 -2.05 16 21 C 0.09 1.38 11.18 84.68 0.95 2.32 16 22 N -0.51 -9.25 10.36 -195.85 -2.03 -11.28 16 23 C 0.09 1.43 11.18 84.68 0.95 2.37 16 24 C -0.16 -2.45 9.78 22.36 0.22 -2.23 16 25 H 0.08 2.43 8.06 -2.91 -0.02 2.41 16 26 H 0.11 2.45 7.84 -2.91 -0.02 2.43 16 27 H 0.09 2.90 7.53 -2.91 -0.02 2.88 16 28 H 0.08 1.40 7.79 -2.39 -0.02 1.38 16 29 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.41 7.06 6.95 -92.71 -0.64 6.42 16 31 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.15 1.43 7.01 -2.91 -0.02 1.41 16 35 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -75.41 334.32 3.09 -72.31 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.43 Total: 20.30 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 5.81 Total: -20.62 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -3.97 Total: -85.31 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.04 Total: -23.16 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.16 Total: -8.90 kcal Total: -75.41 3.09 -72.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734457508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.679 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds