Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46972 * 322.86958 * 3 2 1 5 5 C 1.36016 * 116.99777 * 179.97438 * 4 3 2 6 6 C 1.38515 * 120.06486 * 359.72979 * 5 4 3 7 7 C 1.38458 * 119.99199 * 179.74026 * 6 5 4 8 8 F 1.35097 * 119.93476 * 180.25420 * 7 6 5 9 9 C 1.38445 * 120.12862 * 0.50730 * 7 6 5 10 10 C 1.38238 * 120.13522 * 359.77387 * 9 7 6 11 11 C 1.38691 * 120.00160 * 359.96666 * 10 9 7 12 12 N 1.40116 * 120.06400 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99907 * 359.97438 * 12 11 10 14 14 C 1.50699 * 109.47396 * 180.02562 * 13 12 11 15 15 O 1.21292 * 119.99672 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00409 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00143 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99719 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00003 * 179.97438 * 17 16 14 20 20 N 1.31405 * 119.99703 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99814 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.47130 * 90.00179 * 21 19 17 23 23 H 1.48497 * 109.47206 * 209.99946 * 21 19 17 24 24 H 1.48499 * 109.47393 * 330.00263 * 21 19 17 25 25 H 4.38444 * 5.44449 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 27 27 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 28 28 H 1.07999 * 120.00210 * 359.97438 * 6 5 4 29 29 H 1.07996 * 119.93070 * 179.74095 * 9 7 6 30 30 H 1.08002 * 119.99946 * 179.97438 * 10 9 7 31 31 H 0.96997 * 119.99943 * 179.97438 * 12 11 10 32 32 H 1.09003 * 109.46859 * 300.00264 * 13 12 11 33 33 H 1.08998 * 109.47158 * 60.00034 * 13 12 11 34 34 H 0.97001 * 119.99421 * 359.97438 * 16 14 13 35 35 H 0.97008 * 119.99660 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.0733 0.8133 5 6 4.4713 -1.2151 0.9204 6 6 5.3159 -0.3434 0.2530 7 6 6.6883 -0.4858 0.3674 8 9 7.5110 0.3681 -0.2799 9 6 7.2193 -1.5049 1.1397 10 6 6.3813 -2.3814 1.8034 11 6 5.0056 -2.2405 1.6970 12 7 4.1550 -3.1278 2.3696 13 6 4.7186 -4.2060 3.1857 14 6 3.6004 -5.0114 3.7957 15 8 2.4462 -4.7137 3.5710 16 7 3.8827 -6.0618 4.5915 17 6 2.8654 -6.7942 5.1468 18 1 1.8377 -6.5291 4.9468 19 6 3.1566 -7.8774 5.9669 20 7 2.1815 -8.5790 6.4994 21 14 4.9341 -8.3362 6.3122 22 1 5.4065 -7.6125 7.5198 23 1 5.0317 -9.8000 6.5425 24 1 5.7772 -7.9609 5.1488 25 1 -1.0499 -0.0001 0.0003 26 1 3.0094 -0.1267 -1.0197 27 1 3.0089 0.9477 0.3994 28 1 4.9039 0.4495 -0.3535 29 1 8.2903 -1.6155 1.2234 30 1 6.7978 -3.1758 2.4049 31 1 3.1931 -3.0282 2.2948 32 1 5.3322 -4.8533 2.5591 33 1 5.3331 -3.7787 3.9781 34 1 4.8058 -6.2996 4.7714 35 1 2.3847 -9.3355 7.0717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749879543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = -23.713923 kcal Electronic energy + Delta-G solvation = -21793.411622 eV Core-core repulsion = 18094.508038 eV Total energy + Delta-G solvation = -3698.903584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.78300 -40.38306 -38.70186 -37.62876 -35.02764 -34.00539 -33.59403 -31.82278 -30.38164 -29.72147 -27.66350 -26.64660 -24.34817 -22.70196 -21.82601 -19.60962 -18.92634 -18.70367 -18.44943 -17.28502 -16.65208 -16.29626 -16.05145 -15.51293 -15.41961 -15.11956 -14.92065 -14.78140 -14.49050 -14.24763 -13.40263 -13.27390 -13.03629 -12.91607 -12.47483 -12.41498 -12.25088 -12.00259 -11.49371 -11.40225 -11.25697 -10.78029 -10.67564 -10.36751 -10.07789 -9.92291 -9.70608 -8.79001 -8.77355 -8.32132 -7.10677 -6.41825 -3.94534 1.14843 1.32851 2.08057 2.54876 2.95725 3.00431 3.09444 3.38604 3.50612 3.53116 3.60466 4.01265 4.12758 4.30529 4.52803 4.64191 4.78138 4.90696 4.99447 5.11702 5.12829 5.31226 5.49222 5.58937 5.62487 5.70731 5.73794 5.96548 6.02155 6.18607 6.64212 6.95660 7.30201 7.37555 7.49543 7.93254 8.04915 8.44369 8.81129 9.28305 9.62831 10.70578 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.003649 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.294026 B = 7670.699416 C = 9397.545689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.203 4.203 3 C 0.176 3.824 4 O -0.304 6.304 5 C 0.080 3.920 6 C -0.196 4.196 7 C 0.061 3.939 8 F -0.147 7.147 9 C -0.129 4.129 10 C -0.152 4.152 11 C 0.205 3.795 12 N -0.717 5.717 13 C 0.109 3.891 14 C 0.439 3.561 15 O -0.573 6.573 16 N -0.578 5.578 17 C -0.310 4.310 18 H 0.121 0.879 19 C 0.045 3.955 20 N -0.875 5.875 21 Si 0.880 3.120 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.268 1.268 25 H 0.225 0.775 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.419 0.581 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.373 0.627 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 15.502 -11.730 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.203 4.203 3 C 0.102 3.898 4 O -0.218 6.218 5 C 0.031 3.969 6 C -0.216 4.216 7 C 0.040 3.960 8 F -0.126 7.126 9 C -0.149 4.149 10 C -0.176 4.176 11 C 0.098 3.902 12 N -0.349 5.349 13 C -0.019 4.019 14 C 0.224 3.776 15 O -0.456 6.456 16 N -0.216 5.216 17 C -0.439 4.439 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.514 5.514 21 Si 0.706 3.294 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.193 1.193 25 H 0.241 0.759 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.259 0.741 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.206 0.794 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.871 15.249 -11.538 20.678 hybrid contribution 1.036 -0.215 0.139 1.067 sum 8.907 15.034 -11.399 20.864 Atomic orbital electron populations 1.25038 0.95897 0.97563 0.98633 1.22224 0.93544 1.02537 1.02029 1.19217 0.85026 0.90116 0.95418 1.86131 1.18432 1.50241 1.67012 1.18002 0.82132 0.96659 1.00085 1.20827 0.92459 1.02782 1.05540 1.17024 0.87006 0.92600 0.99420 1.91450 1.71929 1.69189 1.80014 1.20774 1.00559 0.94999 0.98534 1.20350 0.89940 1.02505 1.04761 1.17274 0.90340 0.89472 0.93064 1.44453 1.09156 1.29956 1.51292 1.21005 0.96087 0.89783 0.95045 1.19610 0.89764 0.83877 0.84308 1.90569 1.21058 1.70265 1.63732 1.42116 1.08452 1.27327 1.43726 1.19443 0.90127 1.08728 1.25566 0.86147 1.25065 0.98138 0.96133 0.96611 1.69620 1.31490 1.18912 1.31365 0.86658 0.84154 0.79384 0.79157 1.19426 1.20004 1.19313 0.75855 0.89649 0.89643 0.84438 0.84817 0.84234 0.74083 0.90385 0.90369 0.79365 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.20 -2.36 13.73 -37.13 -0.51 -2.87 16 3 C 0.18 1.83 5.21 34.37 0.18 2.01 16 4 O -0.30 -4.21 9.34 -19.79 -0.18 -4.39 16 5 C 0.08 1.06 6.70 -39.09 -0.26 0.80 16 6 C -0.20 -2.22 9.01 -39.40 -0.36 -2.57 16 7 C 0.06 0.71 7.30 -39.42 -0.29 0.43 16 8 F -0.15 -1.75 17.26 2.25 0.04 -1.72 16 9 C -0.13 -1.40 10.02 -39.50 -0.40 -1.80 16 10 C -0.15 -1.78 9.31 -39.41 -0.37 -2.15 16 11 C 0.20 2.87 6.67 -83.51 -0.56 2.31 16 12 N -0.72 -11.61 5.71 -59.64 -0.34 -11.95 16 13 C 0.11 1.73 5.40 -5.19 -0.03 1.70 16 14 C 0.44 9.57 7.85 -10.98 -0.09 9.48 16 15 O -0.57 -14.92 15.24 5.55 0.08 -14.84 16 16 N -0.58 -13.17 5.09 -10.96 -0.06 -13.23 16 17 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 18 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 19 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 20 N -0.87 -24.92 13.96 55.50 0.77 -24.14 16 21 Si 0.88 18.59 27.73 -169.99 -4.71 13.87 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.08 6.52 56.52 0.37 -4.71 16 25 H 0.22 1.43 7.80 -54.10 -0.42 1.01 16 26 H 0.09 0.71 7.65 -51.93 -0.40 0.31 16 27 H 0.09 0.71 7.68 -51.93 -0.40 0.31 16 28 H 0.14 1.22 6.30 -52.49 -0.33 0.89 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.14 1.39 6.74 -52.49 -0.35 1.04 16 31 H 0.42 7.77 6.80 -40.82 -0.28 7.49 16 32 H 0.08 1.06 7.95 -51.93 -0.41 0.64 16 33 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 34 H 0.37 7.31 5.76 -40.82 -0.24 7.08 16 35 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -32.58 319.57 -5.15 -37.73 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -3.22 Total: 15.11 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.35 Total: -1.25 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.38 Total: -49.32 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.10 Total: -19.23 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.71 Total: 13.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.58 -5.15 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749879543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.011 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds