Wall clock time and date at job start Tue Mar 31 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.53002 * 109.46985 * 120.00271 * 2 1 3 5 5 N 1.46503 * 109.46764 * 184.54764 * 4 2 1 6 6 C 1.46503 * 120.00133 * 271.70586 * 5 4 2 7 7 C 1.50703 * 109.46946 * 269.99985 * 6 5 4 8 8 H 1.08004 * 119.99814 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00201 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99557 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00252 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46956 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47292 * 119.99589 * 11 9 7 14 14 H 1.48496 * 109.47103 * 239.99912 * 11 9 7 15 15 C 1.34781 * 119.99765 * 91.70269 * 5 4 2 16 16 O 1.21680 * 119.99800 * 182.32141 * 15 5 4 17 17 C 1.46718 * 119.99846 * 2.32661 * 15 5 4 18 18 C 1.34944 * 125.05993 * 171.32778 * 17 15 5 19 19 C 1.38912 * 113.64223 * 179.97438 * 18 17 15 20 20 C 1.43198 * 122.95603 * 179.97438 * 19 18 17 21 21 N 7.79282 * 102.67107 * 48.27396 * 2 1 3 22 22 C 1.36631 * 114.09298 * 359.97438 * 19 18 17 23 23 S 1.70597 * 110.54004 * 0.23179 * 22 19 18 24 24 H 1.09007 * 109.46926 * 299.99753 * 1 2 3 25 25 H 1.08996 * 109.47399 * 59.99640 * 1 2 3 26 26 H 1.08999 * 109.47564 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46829 * 239.99796 * 2 1 3 28 28 H 1.09004 * 109.47456 * 279.86046 * 3 2 1 29 29 H 1.08999 * 109.47483 * 39.85959 * 3 2 1 30 30 H 1.09000 * 109.47274 * 159.86113 * 3 2 1 31 31 H 1.08997 * 109.47055 * 64.55268 * 4 2 1 32 32 H 1.08996 * 109.46873 * 304.54583 * 4 2 1 33 33 H 1.08999 * 109.47252 * 29.99685 * 6 5 4 34 34 H 1.08998 * 109.46811 * 150.00193 * 6 5 4 35 35 H 0.97003 * 120.00006 * 180.02562 * 10 9 7 36 36 H 1.08004 * 123.18242 * 0.02562 * 18 17 15 37 37 H 1.08000 * 124.72954 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5009 -0.6272 1.3052 6 6 4.3262 -1.6384 0.6398 7 6 4.6137 -2.7635 1.6004 8 1 4.2214 -2.7285 2.6060 9 6 5.3786 -3.8369 1.1957 10 7 5.8567 -3.8791 -0.0286 11 14 5.7344 -5.2318 2.3861 12 1 5.0864 -4.9460 3.6914 13 1 5.1986 -6.5021 1.8345 14 1 7.2016 -5.3557 2.5790 15 6 4.0857 0.3898 1.9688 16 8 5.2982 0.4917 1.9798 17 6 3.2603 1.3739 2.6780 18 6 3.7325 2.3287 3.5063 19 6 2.7404 3.1341 4.0511 20 6 3.0187 4.2085 4.9559 21 7 3.2394 5.0603 5.6744 22 6 1.4756 2.8109 3.6477 23 16 1.5096 1.4817 2.5789 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.9953 1.8437 -1.0125 29 1 1.4175 2.0480 0.6586 30 1 3.0708 1.4634 0.3538 31 1 1.7448 -1.7698 1.2093 32 1 1.6116 -0.2567 2.1373 33 1 3.7938 -2.0284 -0.2277 34 1 5.2645 -1.1869 0.3176 35 1 6.3945 -4.6345 -0.3135 36 1 4.7827 2.4555 3.7245 37 1 0.5790 3.3227 3.9649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752413318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:51 Heat of formation + Delta-G solvation = 37.611968 kcal Electronic energy + Delta-G solvation = -21165.134168 eV Core-core repulsion = 18035.103050 eV Total energy + Delta-G solvation = -3130.031118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.74902 -38.30677 -36.60443 -35.78215 -33.87089 -32.41015 -30.30788 -27.68825 -27.34660 -26.14037 -25.28197 -23.68696 -21.29137 -20.55395 -18.97173 -18.08171 -17.09976 -16.58598 -15.92486 -15.70562 -15.27860 -14.88247 -14.47566 -14.14508 -13.76192 -13.62090 -13.48097 -13.20812 -12.90925 -12.72882 -12.36652 -12.31841 -12.26634 -11.91824 -11.78230 -11.40269 -11.38485 -11.07452 -10.99596 -10.88589 -10.65489 -10.27350 -9.99734 -9.70632 -9.30612 -8.91708 -8.50956 -8.21370 -7.84990 -6.12027 -4.17286 0.41898 1.37938 1.69936 1.75537 2.66872 3.25935 3.33972 3.35908 3.38981 3.59120 3.72723 4.08996 4.39149 4.68440 4.79553 4.88625 4.94653 5.16463 5.23477 5.25558 5.30703 5.55449 5.62231 5.75592 5.75835 5.87682 5.98036 6.01185 6.10923 6.11940 6.32304 6.35114 6.90662 7.29749 7.37198 7.45765 7.83723 8.12044 8.16005 8.73501 8.90298 9.48431 10.96053 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.005231 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.571315 B = 5351.498298 C = 6355.174147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.177 4.177 4 C 0.109 3.891 5 N -0.588 5.588 6 C 0.248 3.752 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.578 3.422 16 O -0.522 6.522 17 C -0.259 4.259 18 C -0.037 4.037 19 C -0.064 4.064 20 C 0.280 3.720 21 N -0.432 5.432 22 C -0.254 4.254 23 S 0.325 5.675 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.158 0.842 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 8.991 0.600 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.235 4.235 4 C -0.018 4.018 5 N -0.319 5.319 6 C 0.129 3.871 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.364 3.636 16 O -0.400 6.400 17 C -0.380 4.380 18 C -0.069 4.069 19 C -0.082 4.082 20 C -0.037 4.037 21 N -0.109 5.109 22 C -0.395 4.395 23 S 0.597 5.403 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.176 0.824 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.602 9.422 0.826 17.397 hybrid contribution 1.159 -0.288 1.226 1.711 sum -13.443 9.134 2.052 16.382 Atomic orbital electron populations 1.21844 0.94346 1.02286 1.01781 1.21631 0.95927 0.96672 0.99794 1.22727 1.02082 0.96138 1.02541 1.21957 0.81802 1.02619 0.95434 1.48154 1.05780 1.25921 1.52010 1.19378 0.90747 0.84638 0.92298 1.21455 1.32898 1.03812 0.98782 0.92237 1.24914 0.95307 0.98356 0.95325 1.69932 1.34983 1.31266 1.16940 0.86447 0.78287 0.81641 0.81093 1.19739 1.20925 1.20834 1.16857 0.86974 0.80400 0.79400 1.90829 1.13005 1.74683 1.61518 1.24609 0.97430 1.05986 1.09927 1.20165 1.00785 0.91993 0.93945 1.15030 0.93046 0.97346 1.02758 1.25225 0.93343 0.92471 0.92633 1.81225 1.07646 1.11159 1.10822 1.26991 1.00422 1.06764 1.05320 1.84339 1.01928 1.20400 1.33621 0.92737 0.92092 0.91987 0.89451 0.91910 0.91175 0.91602 0.87907 0.92156 0.94512 0.93368 0.92665 0.82421 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.02 37.16 0.34 -0.84 16 2 C -0.12 -1.37 2.94 -90.62 -0.27 -1.64 16 3 C -0.18 -2.00 7.71 37.16 0.29 -1.72 16 4 C 0.11 1.53 4.86 -4.04 -0.02 1.51 16 5 N -0.59 -11.31 2.16 -176.59 -0.38 -11.69 16 6 C 0.25 5.99 5.19 -5.19 -0.03 5.97 16 7 C -0.53 -14.20 9.39 -34.44 -0.32 -14.52 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 11 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.58 11.35 5.93 -12.83 -0.08 11.27 16 16 O -0.52 -12.57 16.38 5.21 0.09 -12.49 16 17 C -0.26 -3.83 5.12 -37.33 -0.19 -4.02 16 18 C -0.04 -0.51 9.73 -40.50 -0.39 -0.91 16 19 C -0.06 -0.76 5.67 -108.30 -0.61 -1.38 16 20 C 0.28 3.70 15.55 -22.47 -0.35 3.35 16 21 N -0.43 -6.50 18.54 41.84 0.78 -5.73 16 22 C -0.25 -2.40 10.82 30.15 0.33 -2.08 16 23 S 0.33 3.24 12.12 -107.50 -1.30 1.93 16 24 H 0.05 0.37 6.92 -51.93 -0.36 0.01 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.65 4.81 -24.78 -0.12 0.53 16 30 H 0.07 0.94 4.55 -51.93 -0.24 0.71 16 31 H 0.10 1.46 8.08 -51.93 -0.42 1.04 16 32 H 0.06 0.74 3.53 -18.03 -0.06 0.67 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.33 7.39 -51.93 -0.38 0.95 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.16 2.25 8.04 -52.48 -0.42 1.82 16 37 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -31.80 318.86 -5.80 -37.60 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.08 Total: -2.44 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.41 Total: -3.38 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 1.13 Total: -42.08 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.30 Total: 1.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.80 -5.80 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752413318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.209 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds