Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48502 * 109.46941 * 272.42287 * 3 2 1 5 5 H 1.48499 * 109.46916 * 32.41969 * 3 2 1 6 6 H 1.48495 * 109.47433 * 152.41921 * 3 2 1 7 7 C 1.40037 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00252 * 347.75312 * 7 2 1 9 9 C 1.41542 * 119.99689 * 167.75208 * 7 2 1 10 10 C 1.41186 * 120.99570 * 149.40189 * 9 7 2 11 11 C 1.37580 * 119.02440 * 180.02562 * 10 9 7 12 12 N 1.32087 * 121.11408 * 359.72554 * 11 10 9 13 13 C 1.32487 * 122.22205 * 0.56983 * 12 11 10 14 14 N 1.39352 * 119.57822 * 179.70676 * 13 12 11 15 15 C 1.34774 * 119.99997 * 4.93660 * 14 13 12 16 16 O 1.21703 * 120.00091 * 355.11649 * 15 14 13 17 17 C 1.43200 * 120.00075 * 174.84301 * 15 14 13 18 18 C 8.45995 * 146.24410 * 297.29521 * 2 1 3 19 19 C 9.67977 * 141.97635 * 300.85901 * 2 1 3 20 20 C 1.39842 * 120.16864 * 184.84227 * 19 18 17 21 21 C 1.37893 * 119.82618 * 179.77153 * 20 19 18 22 22 C 1.38400 * 120.16985 * 0.50663 * 21 20 19 23 23 C 1.38410 * 120.34741 * 359.74344 * 22 21 20 24 24 C 1.37890 * 120.17071 * 0.02562 * 23 22 21 25 25 C 1.38634 * 120.83890 * 359.43170 * 13 12 11 26 26 H 0.97000 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.48551 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.44116 * 179.97438 * 11 10 9 29 29 H 0.96992 * 119.99628 * 184.93868 * 14 13 12 30 30 H 1.08001 * 120.08939 * 0.02562 * 20 19 18 31 31 H 1.08004 * 119.91780 * 180.27826 * 21 20 19 32 32 H 1.08001 * 119.83096 * 179.72684 * 22 21 20 33 33 H 1.08000 * 119.91337 * 180.02562 * 23 22 21 34 34 H 1.07999 * 120.08527 * 179.97438 * 24 23 22 35 35 H 1.07998 * 120.60285 * 180.30029 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4376 2.0760 -1.3989 5 1 1.4654 2.6373 0.7506 6 1 3.5636 1.4260 0.6482 7 6 2.0075 -1.2128 0.0005 8 1 1.4860 -2.1373 0.1993 9 6 3.3988 -1.2267 -0.2595 10 6 4.2369 -2.2041 0.3199 11 6 5.5837 -2.1794 0.0398 12 7 6.0975 -1.2639 -0.7618 13 6 5.3556 -0.3222 -1.3259 14 7 5.9564 0.6204 -2.1581 15 6 7.2644 0.5124 -2.4645 16 8 7.9415 -0.3552 -1.9450 17 6 7.8561 1.4149 -3.4058 18 6 8.3410 2.1557 -4.1774 19 6 8.9326 3.0584 -5.1185 20 6 8.2522 4.2178 -5.5034 21 6 8.8305 5.0846 -6.4066 22 6 10.0765 4.8042 -6.9398 23 6 10.7541 3.6561 -6.5677 24 6 10.1911 2.7819 -5.6621 25 6 3.9884 -0.2661 -1.1032 26 1 -0.4850 0.8400 -0.0004 27 1 3.8270 -2.9595 0.9740 28 1 6.2311 -2.9236 0.4797 29 1 5.4332 1.3541 -2.5167 30 1 7.2780 4.4360 -5.0913 31 1 8.3082 5.9828 -6.7015 32 1 10.5224 5.4847 -7.6501 33 1 11.7262 3.4444 -6.9879 34 1 10.7208 1.8862 -5.3731 35 1 3.3866 0.5003 -1.5688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764206509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = 84.135909 kcal Electronic energy + Delta-G solvation = -20400.535125 eV Core-core repulsion = 17137.077485 eV Total energy + Delta-G solvation = -3263.457640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91172 -39.46532 -38.07652 -34.52618 -34.23229 -33.81777 -31.39193 -31.36455 -30.77919 -28.97751 -26.09262 -24.68808 -22.88655 -22.69423 -22.46721 -20.54094 -19.03035 -17.84818 -17.72339 -16.32635 -16.09809 -15.62221 -15.36541 -15.00761 -14.84214 -14.42915 -14.11770 -14.04328 -13.84317 -13.52126 -13.16102 -12.99234 -12.76717 -11.89472 -11.74737 -11.69394 -11.31752 -11.05044 -10.95406 -10.75363 -10.73671 -10.14342 -10.08791 -9.81915 -9.43905 -9.37364 -8.90122 -8.29480 -8.00605 -7.36123 -7.08845 -4.78880 0.38611 0.99992 1.82593 2.18265 2.47796 2.58994 2.97143 3.10116 3.12238 3.20566 3.37128 3.84203 3.94517 4.10616 4.53198 4.55681 4.56551 4.70799 4.97416 5.06804 5.15942 5.32785 5.54928 5.62169 5.70912 5.99110 6.07292 6.08112 6.20390 6.25449 6.34205 6.48941 6.51696 6.89647 7.01690 7.06294 7.15027 7.47156 7.62908 7.90867 8.14644 8.32773 8.47733 8.60343 9.34134 9.92600 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.003201 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.252742 B = 8744.887098 C = 9932.745312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.084 3.916 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.436 4.436 8 H 0.097 0.903 9 C 0.127 3.873 10 C -0.267 4.267 11 C 0.129 3.871 12 N -0.555 5.555 13 C 0.367 3.633 14 N -0.649 5.649 15 C 0.616 3.384 16 O -0.453 6.453 17 C -0.177 4.177 18 C -0.060 4.060 19 C 0.003 3.997 20 C -0.087 4.087 21 C -0.122 4.122 22 C -0.106 4.106 23 C -0.122 4.122 24 C -0.087 4.087 25 C -0.315 4.315 26 H 0.288 0.712 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.412 0.588 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.355 11.333 -11.651 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.136 4.136 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.466 4.466 8 H 0.115 0.885 9 C 0.119 3.881 10 C -0.290 4.290 11 C -0.023 4.023 12 N -0.275 5.275 13 C 0.140 3.860 14 N -0.294 5.294 15 C 0.401 3.599 16 O -0.323 6.323 17 C -0.180 4.180 18 C -0.063 4.063 19 C 0.003 3.997 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.105 4.105 25 C -0.340 4.340 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.248 0.752 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.524 10.748 -11.445 21.389 hybrid contribution -1.087 1.176 -0.085 1.603 sum 13.437 11.924 -11.530 21.346 Atomic orbital electron populations 1.69602 1.08042 1.30558 1.34408 1.26188 0.94846 1.01818 0.90750 0.86258 0.81081 0.79463 0.78939 1.19646 1.21746 1.16710 1.19512 0.90738 0.95833 1.40499 0.88538 1.17706 0.93496 0.89458 0.87473 1.21950 0.94110 1.05325 1.07614 1.21921 0.92900 0.94439 0.93055 1.67307 1.38167 1.06542 1.15493 1.17903 0.88177 0.89167 0.90730 1.43257 1.09601 1.28420 1.48146 1.14755 0.82001 0.82737 0.80446 1.90988 1.60489 1.31945 1.48899 1.20936 1.00436 0.98052 0.98589 1.19265 0.98287 0.94660 0.94054 1.16073 0.94550 0.93236 0.95873 1.21347 0.99763 0.92722 0.96685 1.21116 0.95836 0.99671 0.97323 1.21374 0.94912 0.97020 0.99113 1.21120 1.00356 0.94577 0.97897 1.21380 0.93726 0.99602 0.95786 1.21240 0.92651 1.08760 1.11353 0.90130 0.86957 0.84991 0.75241 0.85114 0.85232 0.85569 0.85258 0.85120 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.45 13.92 55.55 0.77 -19.67 16 2 C 0.08 2.12 5.48 -17.35 -0.10 2.02 16 3 Si 0.92 19.85 24.43 -169.99 -4.15 15.70 16 4 H -0.27 -5.48 6.67 56.52 0.38 -5.10 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.24 -5.53 6.65 56.52 0.38 -5.16 16 7 C -0.44 -11.31 9.67 -37.65 -0.36 -11.67 16 8 H 0.10 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.13 3.15 5.16 -106.55 -0.55 2.60 16 10 C -0.27 -6.11 9.90 -38.70 -0.38 -6.50 16 11 C 0.13 2.87 11.15 -17.68 -0.20 2.68 16 12 N -0.56 -13.43 7.84 -12.54 -0.10 -13.53 16 13 C 0.37 8.44 7.41 -154.79 -1.15 7.29 16 14 N -0.65 -12.48 5.38 -13.69 -0.07 -12.56 16 15 C 0.62 11.96 7.61 -14.34 -0.11 11.85 16 16 O -0.45 -10.47 15.34 5.19 0.08 -10.39 16 17 C -0.18 -2.83 13.62 -38.83 -0.53 -3.36 16 18 C -0.06 -0.83 13.25 -38.83 -0.51 -1.34 16 19 C 0.00 0.03 5.74 -106.77 -0.61 -0.58 16 20 C -0.09 -0.80 9.77 -39.11 -0.38 -1.18 16 21 C -0.12 -0.88 10.03 -39.65 -0.40 -1.28 16 22 C -0.11 -0.71 10.04 -39.46 -0.40 -1.11 16 23 C -0.12 -0.89 10.03 -39.65 -0.40 -1.29 16 24 C -0.09 -0.82 9.77 -39.11 -0.38 -1.20 16 25 C -0.31 -7.41 6.94 -38.47 -0.27 -7.68 16 26 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 27 H 0.11 2.35 8.06 -52.48 -0.42 1.93 16 28 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 29 H 0.41 6.45 8.66 -40.82 -0.35 6.10 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.11 2.46 4.43 -52.49 -0.23 2.23 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -31.09 318.76 -8.55 -39.64 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.15 Total: 6.76 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -6.73 Total: -10.76 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.60 Total: -45.76 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.15 Total: 15.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.09 -8.55 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764206509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.775 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds