Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48502 * 109.46941 * 272.42287 * 3 2 1 5 5 H 1.48499 * 109.46916 * 32.41969 * 3 2 1 6 6 H 1.48495 * 109.47433 * 152.41921 * 3 2 1 7 7 C 1.40037 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00252 * 347.75312 * 7 2 1 9 9 C 1.41542 * 119.99689 * 167.75208 * 7 2 1 10 10 C 1.41186 * 120.99570 * 149.40189 * 9 7 2 11 11 C 1.37580 * 119.02440 * 180.02562 * 10 9 7 12 12 N 1.32087 * 121.11408 * 359.72554 * 11 10 9 13 13 C 1.32487 * 122.22205 * 0.56983 * 12 11 10 14 14 N 1.39352 * 119.57822 * 179.70676 * 13 12 11 15 15 C 1.34774 * 119.99997 * 4.93660 * 14 13 12 16 16 O 1.21703 * 120.00091 * 355.11649 * 15 14 13 17 17 C 1.43200 * 120.00075 * 174.84301 * 15 14 13 18 18 C 8.45995 * 146.24410 * 297.29521 * 2 1 3 19 19 C 9.67977 * 141.97635 * 300.85901 * 2 1 3 20 20 C 1.39842 * 120.16864 * 184.84227 * 19 18 17 21 21 C 1.37893 * 119.82618 * 179.77153 * 20 19 18 22 22 C 1.38400 * 120.16985 * 0.50663 * 21 20 19 23 23 C 1.38410 * 120.34741 * 359.74344 * 22 21 20 24 24 C 1.37890 * 120.17071 * 0.02562 * 23 22 21 25 25 C 1.38634 * 120.83890 * 359.43170 * 13 12 11 26 26 H 0.97000 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.48551 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.44116 * 179.97438 * 11 10 9 29 29 H 0.96992 * 119.99628 * 184.93868 * 14 13 12 30 30 H 1.08001 * 120.08939 * 0.02562 * 20 19 18 31 31 H 1.08004 * 119.91780 * 180.27826 * 21 20 19 32 32 H 1.08001 * 119.83096 * 179.72684 * 22 21 20 33 33 H 1.08000 * 119.91337 * 180.02562 * 23 22 21 34 34 H 1.07999 * 120.08527 * 179.97438 * 24 23 22 35 35 H 1.07998 * 120.60285 * 180.30029 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4376 2.0760 -1.3989 5 1 1.4654 2.6373 0.7506 6 1 3.5636 1.4260 0.6482 7 6 2.0075 -1.2128 0.0005 8 1 1.4860 -2.1373 0.1993 9 6 3.3988 -1.2267 -0.2595 10 6 4.2369 -2.2041 0.3199 11 6 5.5837 -2.1794 0.0398 12 7 6.0975 -1.2639 -0.7618 13 6 5.3556 -0.3222 -1.3259 14 7 5.9564 0.6204 -2.1581 15 6 7.2644 0.5124 -2.4645 16 8 7.9415 -0.3552 -1.9450 17 6 7.8561 1.4149 -3.4058 18 6 8.3410 2.1557 -4.1774 19 6 8.9326 3.0584 -5.1185 20 6 8.2522 4.2178 -5.5034 21 6 8.8305 5.0846 -6.4066 22 6 10.0765 4.8042 -6.9398 23 6 10.7541 3.6561 -6.5677 24 6 10.1911 2.7819 -5.6621 25 6 3.9884 -0.2661 -1.1032 26 1 -0.4850 0.8400 -0.0004 27 1 3.8270 -2.9595 0.9740 28 1 6.2311 -2.9236 0.4797 29 1 5.4332 1.3541 -2.5167 30 1 7.2780 4.4360 -5.0913 31 1 8.3082 5.9828 -6.7015 32 1 10.5224 5.4847 -7.6501 33 1 11.7262 3.4444 -6.9879 34 1 10.7208 1.8862 -5.3731 35 1 3.3866 0.5003 -1.5688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764206509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = 66.429572 kcal Electronic energy + Delta-G solvation = -20401.302929 eV Core-core repulsion = 17137.077485 eV Total energy + Delta-G solvation = -3264.225444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55900 -40.13116 -39.78911 -36.26513 -35.69434 -35.18131 -33.27225 -31.96741 -31.76357 -30.57263 -27.98416 -25.92442 -24.27800 -23.76504 -23.49115 -22.19979 -20.42640 -19.65174 -18.67569 -17.89220 -17.41122 -16.95240 -16.56060 -16.51015 -16.07266 -15.97577 -15.80441 -14.96378 -14.81514 -14.79234 -14.65377 -14.41003 -14.17172 -13.51206 -12.80868 -12.74428 -12.66669 -12.51942 -12.45077 -12.32905 -11.95055 -11.82761 -11.64179 -11.48783 -11.23069 -10.19238 -9.97678 -9.82106 -9.67430 -9.10989 -8.97751 -6.75828 -0.50481 0.40294 0.41331 0.70492 0.91822 1.13512 1.22442 1.39914 1.46043 1.75684 2.07189 2.33099 2.65035 2.90109 2.95940 3.46157 3.80023 3.97746 3.98973 4.10866 4.24206 4.41331 4.45665 4.54077 4.55431 4.56342 4.69455 4.91022 5.06157 5.08957 5.22033 5.37720 5.39528 5.40791 5.50942 5.63979 5.91687 5.93458 5.96742 6.13661 6.26248 6.46540 6.65792 6.89361 7.56145 8.08760 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020625 B = 0.003201 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.252742 B = 8744.887098 C = 9932.745312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.052 3.948 3 Si 0.964 3.036 4 H -0.245 1.245 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.070 0.930 9 C 0.112 3.888 10 C -0.275 4.275 11 C 0.130 3.870 12 N -0.575 5.575 13 C 0.363 3.637 14 N -0.641 5.641 15 C 0.625 3.375 16 O -0.499 6.499 17 C -0.232 4.232 18 C -0.006 4.006 19 C -0.040 4.040 20 C -0.090 4.090 21 C -0.124 4.124 22 C -0.094 4.094 23 C -0.124 4.124 24 C -0.094 4.094 25 C -0.319 4.319 26 H 0.299 0.701 27 H 0.126 0.874 28 H 0.165 0.835 29 H 0.428 0.572 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.131 0.869 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.302 14.231 -13.853 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.165 4.165 3 Si 0.787 3.213 4 H -0.169 1.169 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.088 0.912 9 C 0.104 3.896 10 C -0.298 4.298 11 C -0.022 4.022 12 N -0.295 5.295 13 C 0.135 3.865 14 N -0.288 5.288 15 C 0.412 3.588 16 O -0.372 6.372 17 C -0.236 4.236 18 C -0.009 4.009 19 C -0.040 4.040 20 C -0.108 4.108 21 C -0.141 4.141 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.112 4.112 25 C -0.345 4.345 26 H 0.110 0.890 27 H 0.144 0.856 28 H 0.182 0.818 29 H 0.266 0.734 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.149 0.851 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.442 13.672 -13.678 25.384 hybrid contribution -1.526 0.346 0.441 1.626 sum 14.917 14.018 -13.236 24.376 Atomic orbital electron populations 1.69616 1.09024 1.31988 1.35323 1.26825 0.95453 1.04169 0.90086 0.85529 0.79062 0.76417 0.80286 1.16940 1.20201 1.18541 1.19490 0.91550 0.95587 1.42893 0.91227 1.17908 0.93320 0.90522 0.87850 1.22164 0.94420 1.05377 1.07842 1.22430 0.93103 0.94456 0.92242 1.67437 1.38897 1.07163 1.15975 1.18101 0.88222 0.89411 0.90742 1.43208 1.09950 1.28180 1.47433 1.14941 0.81505 0.82336 0.79998 1.90944 1.61385 1.34086 1.50826 1.20159 1.02879 0.99865 1.00656 1.19781 0.95909 0.92930 0.92237 1.16310 0.96039 0.94272 0.97365 1.21549 1.00095 0.92226 0.96915 1.21485 0.96203 1.00058 0.96372 1.21850 0.94304 0.96713 0.98271 1.21461 1.01387 0.94253 0.97032 1.21537 0.93211 1.00262 0.96239 1.21320 0.93072 1.08830 1.11232 0.89025 0.85579 0.81791 0.73365 0.84406 0.82538 0.82352 0.82698 0.85150 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.12 13.92 21.84 0.30 -42.82 16 2 C 0.05 2.64 5.48 85.29 0.47 3.11 16 3 Si 0.96 40.25 24.43 68.60 1.68 41.92 16 4 H -0.24 -9.14 6.67 99.48 0.66 -8.48 16 5 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.26 -11.60 6.65 99.48 0.66 -10.94 16 7 C -0.46 -24.90 9.67 23.52 0.23 -24.67 16 8 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 9 C 0.11 5.66 5.16 -21.11 -0.11 5.55 16 10 C -0.27 -12.69 9.90 22.84 0.23 -12.47 16 11 C 0.13 5.73 11.15 84.50 0.94 6.67 16 12 N -0.57 -27.80 7.84 -193.59 -1.52 -29.32 16 13 C 0.36 16.68 7.41 132.80 0.98 17.66 16 14 N -0.64 -24.57 5.38 -315.43 -1.70 -26.26 16 15 C 0.62 24.58 7.61 85.49 0.65 25.23 16 16 O -0.50 -23.56 15.34 -4.36 -0.07 -23.63 16 17 C -0.23 -7.46 13.62 30.01 0.41 -7.05 16 18 C -0.01 -0.17 13.25 30.01 0.40 0.23 16 19 C -0.04 -0.81 5.74 -21.26 -0.12 -0.94 16 20 C -0.09 -1.41 9.77 22.58 0.22 -1.19 16 21 C -0.12 -1.30 10.03 22.23 0.22 -1.08 16 22 C -0.09 -0.83 10.04 22.35 0.22 -0.61 16 23 C -0.12 -1.37 10.03 22.23 0.22 -1.15 16 24 C -0.09 -1.59 9.77 22.58 0.22 -1.37 16 25 C -0.32 -15.02 6.94 22.99 0.16 -14.86 16 26 H 0.30 13.75 8.29 -92.71 -0.77 12.99 16 27 H 0.13 5.33 8.06 -2.91 -0.02 5.31 16 28 H 0.17 6.03 8.06 -2.91 -0.02 6.01 16 29 H 0.43 13.08 8.66 -92.71 -0.80 12.27 16 30 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.12 5.27 4.43 -2.91 -0.01 5.25 16 Total: -1.00 -69.06 318.76 4.30 -64.76 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.26 Total: 22.26 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.34 Total: -6.92 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -2.91 Total: -98.39 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.07 Total: -23.63 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.68 Total: 41.92 kcal Total: -69.06 4.30 -64.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764206509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.191 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds