Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86801 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47301 * 299.99943 * 3 2 1 6 6 H 1.48505 * 109.46943 * 60.00265 * 3 2 1 7 7 C 1.40122 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.46115 * 120.00104 * 0.02562 * 7 2 1 10 10 O 1.21758 * 119.99901 * 0.02562 * 9 7 2 11 11 N 1.34784 * 120.00276 * 179.97438 * 9 7 2 12 12 C 1.39555 * 120.00059 * 185.58244 * 11 9 7 13 13 C 1.38889 * 120.06041 * 24.83734 * 12 11 9 14 14 C 1.38660 * 119.87200 * 179.97438 * 13 12 11 15 15 N 1.39997 * 119.99903 * 179.97438 * 14 13 12 16 16 C 1.46760 * 124.35208 * 4.93953 * 15 14 13 17 17 C 1.54658 * 105.38365 * 162.85498 * 16 15 14 18 18 C 1.54625 * 101.68481 * 25.77145 * 17 16 15 19 19 C 1.34419 * 124.35063 * 185.24484 * 15 14 13 20 20 O 1.21292 * 124.93860 * 0.37866 * 19 15 14 21 21 C 1.39000 * 119.99775 * 359.97438 * 14 13 12 22 22 C 1.38209 * 120.11414 * 0.02562 * 21 14 13 23 23 C 1.38294 * 120.12552 * 359.97438 * 22 21 14 24 24 F 1.35102 * 119.99290 * 180.27488 * 23 22 21 25 25 H 0.97001 * 120.00135 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99371 * 5.58231 * 11 9 7 27 27 H 1.07995 * 120.05912 * 359.97438 * 13 12 11 28 28 H 1.09004 * 110.24537 * 281.98729 * 16 15 14 29 29 H 1.09000 * 110.24708 * 43.98468 * 16 15 14 30 30 H 1.08991 * 111.19528 * 267.59300 * 17 16 15 31 31 H 1.09010 * 110.82238 * 143.77585 * 17 16 15 32 32 H 1.09001 * 110.48408 * 216.31132 * 18 17 16 33 33 H 1.09004 * 110.49193 * 93.66457 * 18 17 16 34 34 H 1.08002 * 119.94525 * 179.97438 * 21 14 13 35 35 H 1.08003 * 119.93565 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8815 2.3965 -1.2124 6 1 1.8815 2.3964 1.2126 7 6 2.0069 -1.2135 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2764 -2.4789 0.0005 10 8 0.0588 -2.4789 -0.0004 11 7 1.9503 -3.6462 0.0005 12 6 1.2575 -4.8519 -0.1170 13 6 0.0121 -4.8816 -0.7312 14 6 -0.6726 -6.0819 -0.8464 15 7 -1.9283 -6.1148 -1.4645 16 6 -2.5620 -4.9615 -2.1142 17 6 -3.6764 -5.5550 -3.0075 18 6 -3.9875 -6.8830 -2.2792 19 6 -2.7110 -7.2054 -1.5341 20 8 -2.4338 -8.2903 -1.0679 21 6 -0.1122 -7.2523 -0.3481 22 6 1.1271 -7.2222 0.2630 23 6 1.8143 -6.0279 0.3805 24 9 3.0280 -6.0026 0.9735 25 1 -0.4850 0.8400 -0.0004 26 1 2.9169 -3.6481 0.0823 27 1 -0.4220 -3.9717 -1.1183 28 1 -2.9899 -4.2949 -1.3655 29 1 -1.8352 -4.4265 -2.7254 30 1 -3.3141 -5.7402 -4.0186 31 1 -4.5503 -4.9036 -3.0210 32 1 -4.2175 -7.6682 -2.9994 33 1 -4.8138 -6.7507 -1.5807 34 1 -0.6464 -8.1866 -0.4379 35 1 1.5596 -8.1333 0.6495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772296191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = -83.676686 kcal Electronic energy + Delta-G solvation = -22980.571497 eV Core-core repulsion = 19279.067732 eV Total energy + Delta-G solvation = -3701.503765 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.27987 -40.87466 -38.88368 -37.01530 -36.43730 -33.79961 -32.72659 -32.28304 -29.58519 -28.19640 -27.63371 -26.30500 -23.28978 -22.61838 -21.47069 -20.36111 -19.23433 -17.92809 -17.24948 -16.97109 -16.71363 -15.90473 -15.60437 -15.47005 -15.04402 -14.43962 -14.04693 -13.91106 -13.82021 -13.53734 -13.39613 -13.17490 -12.98623 -12.68628 -12.32176 -12.16272 -11.84915 -11.53512 -11.40408 -11.24794 -11.15181 -11.00242 -10.72356 -10.38416 -9.99396 -9.57035 -9.36368 -9.01151 -7.95964 -7.60456 -7.08913 -6.46423 -4.93549 1.50279 1.83916 2.65532 2.93722 2.99879 3.09010 3.13424 3.89703 4.05526 4.20217 4.35000 4.39874 4.45012 4.72360 4.83605 4.91052 5.23507 5.41847 5.47511 5.49691 5.62478 5.65386 5.68202 5.80608 5.90579 5.96771 6.05667 6.50526 6.65901 6.74897 6.89940 7.18185 7.24880 7.34946 7.58345 7.88336 8.02863 8.13147 8.73972 9.05248 10.22732 10.43149 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.005005 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.571058 B = 5592.928756 C = 7171.584522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.542 3.458 10 O -0.558 6.558 11 N -0.689 5.689 12 C 0.192 3.808 13 C -0.156 4.156 14 C 0.170 3.830 15 N -0.550 5.550 16 C 0.093 3.907 17 C -0.130 4.130 18 C -0.152 4.152 19 C 0.513 3.487 20 O -0.520 6.520 21 C -0.178 4.178 22 C -0.104 4.104 23 C 0.006 3.994 24 F -0.147 7.147 25 H 0.272 0.728 26 H 0.398 0.602 27 H 0.166 0.834 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -8.207 -5.748 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.134 4.134 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.092 0.908 9 C 0.349 3.651 10 O -0.440 6.440 11 N -0.330 5.330 12 C 0.090 3.910 13 C -0.180 4.180 14 C 0.076 3.924 15 N -0.273 5.273 16 C -0.029 4.029 17 C -0.168 4.168 18 C -0.192 4.192 19 C 0.303 3.697 20 O -0.396 6.396 21 C -0.200 4.200 22 C -0.124 4.124 23 C -0.017 4.017 24 F -0.126 7.126 25 H 0.083 0.917 26 H 0.232 0.768 27 H 0.184 0.816 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.172 0.828 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.450 -8.509 -5.494 11.502 hybrid contribution 1.229 0.930 0.293 1.569 sum -4.221 -7.579 -5.200 10.115 Atomic orbital electron populations 1.69975 1.07187 1.27870 1.33490 1.25740 0.94741 1.00585 0.92376 0.86198 0.80549 0.81001 0.78448 1.18544 1.19900 1.19916 1.20896 0.94028 0.88813 1.53182 0.90751 1.18408 0.87474 0.81944 0.77244 1.90562 1.13602 1.85809 1.54052 1.44125 1.10175 1.04002 1.74684 1.17687 0.93248 0.85794 0.94273 1.21137 0.95463 0.97796 1.03556 1.17639 0.84436 0.94253 0.96041 1.45727 1.16058 1.12314 1.53169 1.22356 0.95777 0.88088 0.96689 1.22661 0.99054 0.96038 0.99069 1.22329 0.96501 0.99589 1.00804 1.21048 0.85825 0.83227 0.79616 1.90600 1.76034 1.24367 1.48641 1.21193 0.96358 0.98651 1.03763 1.20650 0.94963 0.96087 1.00668 1.17483 0.84466 0.94508 1.05256 1.91400 1.41686 1.97278 1.82273 0.91675 0.76766 0.81640 0.89409 0.89125 0.89740 0.88676 0.87798 0.87475 0.82811 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.85 11.82 55.55 0.66 -20.19 16 2 C 0.09 2.25 5.50 -17.36 -0.10 2.16 16 3 Si 0.91 18.81 29.56 -169.99 -5.02 13.79 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.53 -14.10 9.53 -35.72 -0.34 -14.44 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.54 14.50 7.54 -13.10 -0.10 14.40 16 10 O -0.56 -16.29 12.17 5.14 0.06 -16.23 16 11 N -0.69 -15.64 5.29 -11.17 -0.06 -15.70 16 12 C 0.19 4.12 6.43 -83.71 -0.54 3.58 16 13 C -0.16 -3.27 8.07 -39.18 -0.32 -3.59 16 14 C 0.17 3.17 6.60 -83.69 -0.55 2.62 16 15 N -0.55 -8.67 3.14 -112.16 -0.35 -9.02 16 16 C 0.09 1.19 6.28 -3.03 -0.02 1.17 16 17 C -0.13 -1.10 7.19 -25.01 -0.18 -1.28 16 18 C -0.15 -1.44 6.86 -26.74 -0.18 -1.62 16 19 C 0.51 7.56 7.92 -10.86 -0.09 7.47 16 20 O -0.52 -9.13 14.81 5.55 0.08 -9.05 16 21 C -0.18 -3.19 9.29 -39.31 -0.37 -3.56 16 22 C -0.10 -1.79 10.01 -39.57 -0.40 -2.18 16 23 C 0.01 0.12 7.31 -39.16 -0.29 -0.16 16 24 F -0.15 -2.76 16.81 2.25 0.04 -2.72 16 25 H 0.27 6.76 8.29 -40.82 -0.34 6.42 16 26 H 0.40 8.08 8.42 -40.82 -0.34 7.74 16 27 H 0.17 3.81 4.70 -52.49 -0.25 3.56 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.20 7.66 -51.93 -0.40 0.80 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.15 2.74 5.24 -52.49 -0.27 2.47 16 35 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -32.46 304.37 -6.81 -39.27 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -3.35 Total: 10.71 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -3.46 Total: 4.57 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.25 Total: -44.92 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.14 Total: -25.28 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.46 -6.81 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772296191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.407 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds