Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86801 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47301 * 299.99943 * 3 2 1 6 6 H 1.48505 * 109.46943 * 60.00265 * 3 2 1 7 7 C 1.40122 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.46115 * 120.00104 * 0.02562 * 7 2 1 10 10 O 1.21758 * 119.99901 * 0.02562 * 9 7 2 11 11 N 1.34784 * 120.00276 * 179.97438 * 9 7 2 12 12 C 1.39555 * 120.00059 * 185.58244 * 11 9 7 13 13 C 1.38889 * 120.06041 * 24.83734 * 12 11 9 14 14 C 1.38660 * 119.87200 * 179.97438 * 13 12 11 15 15 N 1.39997 * 119.99903 * 179.97438 * 14 13 12 16 16 C 1.46760 * 124.35208 * 4.93953 * 15 14 13 17 17 C 1.54658 * 105.38365 * 162.85498 * 16 15 14 18 18 C 1.54625 * 101.68481 * 25.77145 * 17 16 15 19 19 C 1.34419 * 124.35063 * 185.24484 * 15 14 13 20 20 O 1.21292 * 124.93860 * 0.37866 * 19 15 14 21 21 C 1.39000 * 119.99775 * 359.97438 * 14 13 12 22 22 C 1.38209 * 120.11414 * 0.02562 * 21 14 13 23 23 C 1.38294 * 120.12552 * 359.97438 * 22 21 14 24 24 F 1.35102 * 119.99290 * 180.27488 * 23 22 21 25 25 H 0.97001 * 120.00135 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99371 * 5.58231 * 11 9 7 27 27 H 1.07995 * 120.05912 * 359.97438 * 13 12 11 28 28 H 1.09004 * 110.24537 * 281.98729 * 16 15 14 29 29 H 1.09000 * 110.24708 * 43.98468 * 16 15 14 30 30 H 1.08991 * 111.19528 * 267.59300 * 17 16 15 31 31 H 1.09010 * 110.82238 * 143.77585 * 17 16 15 32 32 H 1.09001 * 110.48408 * 216.31132 * 18 17 16 33 33 H 1.09004 * 110.49193 * 93.66457 * 18 17 16 34 34 H 1.08002 * 119.94525 * 179.97438 * 21 14 13 35 35 H 1.08003 * 119.93565 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8815 2.3965 -1.2124 6 1 1.8815 2.3964 1.2126 7 6 2.0069 -1.2135 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2764 -2.4789 0.0005 10 8 0.0588 -2.4789 -0.0004 11 7 1.9503 -3.6462 0.0005 12 6 1.2575 -4.8519 -0.1170 13 6 0.0121 -4.8816 -0.7312 14 6 -0.6726 -6.0819 -0.8464 15 7 -1.9283 -6.1148 -1.4645 16 6 -2.5620 -4.9615 -2.1142 17 6 -3.6764 -5.5550 -3.0075 18 6 -3.9875 -6.8830 -2.2792 19 6 -2.7110 -7.2054 -1.5341 20 8 -2.4338 -8.2903 -1.0679 21 6 -0.1122 -7.2523 -0.3481 22 6 1.1271 -7.2222 0.2630 23 6 1.8143 -6.0279 0.3805 24 9 3.0280 -6.0026 0.9735 25 1 -0.4850 0.8400 -0.0004 26 1 2.9169 -3.6481 0.0823 27 1 -0.4220 -3.9717 -1.1183 28 1 -2.9899 -4.2949 -1.3655 29 1 -1.8352 -4.4265 -2.7254 30 1 -3.3141 -5.7402 -4.0186 31 1 -4.5503 -4.9036 -3.0210 32 1 -4.2175 -7.6682 -2.9994 33 1 -4.8138 -6.7507 -1.5807 34 1 -0.6464 -8.1866 -0.4379 35 1 1.5596 -8.1333 0.6495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772296191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = -105.052349 kcal Electronic energy + Delta-G solvation = -22981.498415 eV Core-core repulsion = 19279.067732 eV Total energy + Delta-G solvation = -3702.430683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80246 -42.09979 -40.56000 -38.70373 -37.63956 -35.54887 -34.61724 -33.61752 -31.19925 -29.64301 -28.68544 -28.18181 -24.70994 -24.06563 -22.65639 -21.96868 -20.66880 -19.66146 -18.71558 -18.54222 -17.82591 -17.57700 -17.23911 -16.96602 -16.56513 -15.99763 -15.60865 -15.17299 -15.13519 -14.91222 -14.71549 -14.55910 -14.43055 -14.24161 -13.86609 -13.31950 -13.29963 -13.20489 -12.84271 -12.81127 -12.53805 -12.35076 -12.01132 -11.97341 -11.53665 -11.00448 -10.81009 -10.77291 -9.93518 -9.22144 -8.70507 -8.41282 -6.99604 0.02440 0.27410 1.37443 1.40337 1.45672 1.57425 1.74067 2.18185 2.29565 2.64886 2.73557 3.25776 3.28644 3.49670 3.52019 3.82182 3.96634 4.06220 4.19845 4.21898 4.45597 4.57545 4.58990 4.68575 4.82480 5.03020 5.04991 5.14912 5.16956 5.21851 5.29881 5.35949 5.68011 5.76095 6.06195 6.07353 6.18581 6.73505 6.91725 7.16897 8.23266 8.50719 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.005005 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.571058 B = 5592.928756 C = 7171.584522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.035 3.965 3 Si 0.999 3.001 4 H -0.250 1.250 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.562 4.562 8 H 0.090 0.910 9 C 0.528 3.472 10 O -0.593 6.593 11 N -0.686 5.686 12 C 0.165 3.835 13 C -0.173 4.173 14 C 0.171 3.829 15 N -0.559 5.559 16 C 0.084 3.916 17 C -0.112 4.112 18 C -0.139 4.139 19 C 0.503 3.497 20 O -0.551 6.551 21 C -0.177 4.177 22 C -0.087 4.087 23 C 0.003 3.997 24 F -0.144 7.144 25 H 0.280 0.720 26 H 0.407 0.593 27 H 0.140 0.860 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.161 0.839 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 -8.677 -6.452 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.182 4.182 3 Si 0.818 3.182 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.108 0.892 9 C 0.336 3.664 10 O -0.479 6.479 11 N -0.328 5.328 12 C 0.064 3.936 13 C -0.196 4.196 14 C 0.075 3.925 15 N -0.281 5.281 16 C -0.037 4.037 17 C -0.149 4.149 18 C -0.178 4.178 19 C 0.295 3.705 20 O -0.430 6.430 21 C -0.198 4.198 22 C -0.107 4.107 23 C -0.020 4.020 24 F -0.123 7.123 25 H 0.090 0.910 26 H 0.243 0.757 27 H 0.157 0.843 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.179 0.821 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.751 -9.020 -6.215 12.372 hybrid contribution 1.276 0.943 0.511 1.667 sum -4.475 -8.077 -5.705 10.854 Atomic orbital electron populations 1.70101 1.09326 1.29526 1.34355 1.26909 0.95606 1.04652 0.91054 0.84932 0.79260 0.75196 0.78766 1.17312 1.18898 1.19288 1.21392 0.95006 0.89452 1.53834 0.89207 1.18732 0.87333 0.83291 0.77018 1.90531 1.15005 1.86730 1.55628 1.43756 1.10496 1.03776 1.74776 1.17945 0.93863 0.86026 0.95768 1.20904 0.95997 0.97820 1.04920 1.17799 0.85609 0.93598 0.95465 1.46071 1.15289 1.13825 1.52959 1.22536 0.96798 0.87530 0.96864 1.22707 0.98154 0.95560 0.98512 1.22420 0.93733 1.00582 1.01060 1.22097 0.87080 0.82250 0.79093 1.90566 1.77000 1.25463 1.49976 1.21387 0.96624 0.98452 1.03360 1.21010 0.94183 0.96547 0.98949 1.17506 0.84748 0.94326 1.05423 1.91405 1.41424 1.97262 1.82197 0.90963 0.75723 0.84296 0.90752 0.90504 0.88141 0.85729 0.85171 0.85423 0.82135 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.64 11.82 21.85 0.26 -45.38 16 2 C 0.04 1.84 5.50 85.33 0.47 2.31 16 3 Si 1.00 38.51 29.56 68.60 2.03 40.53 16 4 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.56 -30.40 9.53 24.77 0.24 -30.16 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.53 29.60 7.54 86.29 0.65 30.25 16 10 O -0.59 -36.68 12.17 -4.53 -0.06 -36.74 16 11 N -0.69 -32.43 5.29 -307.44 -1.63 -34.06 16 12 C 0.16 7.32 6.43 38.32 0.25 7.56 16 13 C -0.17 -7.62 8.07 22.53 0.18 -7.44 16 14 C 0.17 6.50 6.60 38.12 0.25 6.76 16 15 N -0.56 -17.73 3.14 -627.37 -1.97 -19.70 16 16 C 0.08 2.18 6.28 86.89 0.55 2.73 16 17 C -0.11 -1.60 7.19 31.71 0.23 -1.37 16 18 C -0.14 -2.19 6.86 30.59 0.21 -1.98 16 19 C 0.50 14.19 7.92 87.90 0.70 14.89 16 20 O -0.55 -18.80 14.81 -3.07 -0.05 -18.84 16 21 C -0.18 -6.24 9.29 22.45 0.21 -6.03 16 22 C -0.09 -2.89 10.01 22.28 0.22 -2.67 16 23 C 0.00 0.13 7.31 22.54 0.16 0.29 16 24 F -0.14 -5.29 16.81 44.97 0.76 -4.53 16 25 H 0.28 14.24 8.29 -92.71 -0.77 13.48 16 26 H 0.41 17.08 8.42 -92.71 -0.78 16.30 16 27 H 0.14 6.92 4.70 -2.91 -0.01 6.91 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.16 7.66 -2.39 -0.02 2.15 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.16 5.56 5.24 -2.91 -0.02 5.54 16 35 H 0.17 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -73.89 304.37 4.04 -69.85 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.38 Total: 33.73 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 4.31 Total: 15.14 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.34 Total: -99.14 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.10 Total: -55.58 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.76 Total: -4.53 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.53 kcal Total: -73.89 4.04 -69.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772296191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.199 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds