Wall clock time and date at job start Tue Mar 31 2020 06:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21308 * 119.99885 * 2 1 4 4 C 1.46815 * 119.99863 * 179.97438 * 2 1 3 5 5 C 1.40078 * 120.09728 * 180.02562 * 4 2 1 6 6 C 1.36587 * 119.89899 * 180.29991 * 5 4 2 7 7 C 1.39252 * 120.09541 * 359.47092 * 6 5 4 8 8 N 1.39232 * 119.89681 * 180.25871 * 7 6 5 9 9 C 1.34771 * 119.99914 * 42.26185 * 8 7 6 10 10 S 1.71197 * 120.00364 * 5.54070 * 9 8 7 11 11 N 1.34785 * 119.99730 * 185.53693 * 9 8 7 12 12 C 1.46500 * 119.99727 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47183 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00061 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99656 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00173 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99663 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47070 * 60.00184 * 18 16 14 20 20 H 1.48497 * 109.47061 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47116 * 300.00460 * 18 16 14 22 22 C 1.39241 * 120.20008 * 0.50899 * 7 6 5 23 23 C 1.36584 * 120.10149 * 359.76972 * 22 7 6 24 24 H 1.09001 * 109.47497 * 240.00528 * 1 2 3 25 25 H 1.09007 * 109.47180 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47499 * 120.00101 * 1 2 3 27 27 H 1.07997 * 120.04978 * 0.02562 * 5 4 2 28 28 H 1.07992 * 119.95225 * 179.72282 * 6 5 4 29 29 H 0.97000 * 119.99805 * 222.26780 * 8 7 6 30 30 H 0.97000 * 119.99520 * 0.02562 * 11 9 8 31 31 H 1.09000 * 109.47511 * 299.99985 * 12 11 9 32 32 H 1.08998 * 109.47024 * 60.00201 * 12 11 9 33 33 H 1.09008 * 109.46604 * 299.99947 * 13 12 11 34 34 H 1.09003 * 109.47502 * 59.99743 * 13 12 11 35 35 H 0.97001 * 119.99588 * 180.02562 * 17 16 14 36 36 H 1.07996 * 119.94348 * 179.74798 * 22 7 6 37 37 H 1.08003 * 120.05368 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2410 -1.2715 0.0006 5 6 3.6418 -1.2739 0.0011 6 6 4.3206 -2.4591 -0.0046 7 6 3.6222 -3.6638 0.0003 8 7 4.3184 -4.8696 -0.0001 9 6 5.4063 -5.0198 0.7811 10 16 5.8501 -3.7825 1.8779 11 7 6.1449 -6.1443 0.6989 12 6 7.3271 -6.3078 1.5484 13 6 7.9797 -7.6611 1.2592 14 6 9.1955 -7.8296 2.1335 15 1 9.4750 -7.0494 2.8259 16 6 9.9509 -8.9800 2.0495 17 7 9.6108 -9.9299 1.2059 18 14 11.4584 -9.1885 3.1328 19 1 11.0542 -9.1283 4.5604 20 1 12.0910 -10.5026 2.8530 21 1 12.4280 -8.1008 2.8466 22 6 2.2298 -3.6662 0.0002 23 6 1.5428 -2.4857 0.0001 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 4.1842 -0.3400 0.0015 28 1 5.4005 -2.4620 -0.0087 29 1 4.0204 -5.6015 -0.5627 30 1 5.8936 -6.8452 0.0772 31 1 8.0388 -5.5094 1.3384 32 1 7.0304 -6.2637 2.5963 33 1 7.2682 -8.4598 1.4690 34 1 8.2765 -7.7048 0.2112 35 1 10.1421 -10.7393 1.1471 36 1 1.6924 -4.6029 -0.0002 37 1 0.4628 -2.4885 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783756076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:10 Heat of formation + Delta-G solvation = 0.648563 kcal Electronic energy + Delta-G solvation = -19435.694478 eV Core-core repulsion = 16304.060507 eV Total energy + Delta-G solvation = -3131.633971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57180 -39.38984 -37.91163 -35.56251 -33.23309 -31.84840 -31.18415 -30.04659 -28.69960 -25.47392 -24.05580 -23.44012 -22.45649 -21.44996 -20.09553 -18.67065 -18.14330 -16.88150 -16.54345 -15.95865 -15.61979 -15.21006 -15.05645 -14.74980 -14.50338 -14.30377 -14.22737 -13.78423 -13.29151 -13.01929 -12.64063 -12.45047 -12.38561 -12.28926 -11.45197 -11.40247 -11.09774 -11.01319 -10.75748 -10.63043 -9.99055 -9.82726 -9.64356 -9.48492 -9.30233 -8.58029 -8.47010 -7.65969 -6.98916 -6.21536 -4.25193 0.31027 1.28497 1.45072 2.00284 2.27951 2.62723 3.26085 3.29860 3.33388 3.57185 3.65235 3.86850 4.33519 4.51153 4.68151 4.81267 5.03699 5.07743 5.10358 5.16303 5.20362 5.35804 5.61148 5.73578 5.82841 5.89902 6.09318 6.10059 6.10988 6.33505 6.49607 6.57963 6.63087 6.95406 7.30328 7.32227 7.36311 7.36962 7.76220 8.11351 8.80169 9.40818 10.89980 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047812 B = 0.002539 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.487783 B =11023.966281 C =11421.110812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.461 6.461 4 C -0.182 4.182 5 C -0.050 4.050 6 C -0.088 4.088 7 C 0.180 3.820 8 N -0.648 5.648 9 C 0.548 3.452 10 S -0.626 6.626 11 N -0.655 5.655 12 C 0.120 3.880 13 C 0.012 3.988 14 C -0.523 4.523 15 H 0.063 0.937 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.900 3.100 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.146 4.146 23 C -0.064 4.064 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.150 0.850 29 H 0.407 0.593 30 H 0.398 0.602 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.129 0.871 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.495 11.018 -7.106 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.274 3.726 3 O -0.337 6.337 4 C -0.184 4.184 5 C -0.070 4.070 6 C -0.110 4.110 7 C 0.084 3.916 8 N -0.275 5.275 9 C 0.189 3.811 10 S -0.498 6.498 11 N -0.278 5.278 12 C -0.001 4.001 13 C -0.026 4.026 14 C -0.561 4.561 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.728 3.272 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.167 4.167 23 C -0.084 4.084 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.154 0.846 28 H 0.167 0.833 29 H 0.245 0.755 30 H 0.234 0.766 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.606 12.131 -6.304 23.088 hybrid contribution 0.280 -1.885 -0.485 1.967 sum -18.325 10.246 -6.790 22.066 Atomic orbital electron populations 1.22250 0.93978 1.05012 1.04466 1.22408 0.91566 0.87703 0.70905 1.90556 1.72216 1.34375 1.36603 1.20499 0.94686 0.94578 1.08637 1.20977 0.92737 0.98472 0.94786 1.21167 1.02302 0.90355 0.97221 1.17671 0.90546 0.84608 0.98733 1.42102 1.26834 1.15464 1.43142 1.22455 0.82082 0.90230 0.86363 1.93427 1.80593 1.35182 1.40552 1.45828 1.26900 1.15413 1.39622 1.22390 0.82352 1.01917 0.93487 1.19392 0.95977 0.89086 0.98120 1.20923 1.09834 1.03278 1.22104 0.91854 1.24997 0.98021 0.95655 0.95534 1.69934 1.39700 1.07561 1.36108 0.86511 0.82502 0.77361 0.80873 1.19954 1.21227 1.19935 1.20595 0.91844 0.99178 1.05065 1.20844 0.99778 0.90804 0.96955 0.88822 0.89865 0.88919 0.84623 0.83272 0.75485 0.76572 0.89971 0.90040 0.95927 0.95891 0.92653 0.85265 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.11 8.92 36.01 0.32 -0.79 16 2 C 0.40 3.89 7.21 -30.84 -0.22 3.67 16 3 O -0.46 -6.25 17.07 5.53 0.09 -6.15 16 4 C -0.18 -1.84 5.87 -105.05 -0.62 -2.46 16 5 C -0.05 -0.59 9.54 -39.49 -0.38 -0.97 16 6 C -0.09 -1.12 7.78 -39.80 -0.31 -1.43 16 7 C 0.18 2.01 5.89 -83.75 -0.49 1.51 16 8 N -0.65 -6.97 5.29 -11.39 -0.06 -7.03 16 9 C 0.55 8.07 7.73 -86.92 -0.67 7.40 16 10 S -0.63 -11.85 25.07 -107.50 -2.69 -14.55 16 11 N -0.65 -9.68 5.56 -62.03 -0.34 -10.02 16 12 C 0.12 2.28 5.07 -4.04 -0.02 2.26 16 13 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 14 C -0.52 -13.79 9.11 -34.44 -0.31 -14.10 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 18 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.15 -1.26 9.91 -39.81 -0.39 -1.65 16 23 C -0.06 -0.51 9.42 -39.49 -0.37 -0.88 16 24 H 0.09 0.38 8.08 -51.93 -0.42 -0.04 16 25 H 0.08 0.47 8.12 -51.93 -0.42 0.04 16 26 H 0.09 0.32 8.08 -51.93 -0.42 -0.09 16 27 H 0.14 1.63 7.64 -52.49 -0.40 1.23 16 28 H 0.15 2.17 6.29 -50.29 -0.32 1.85 16 29 H 0.41 2.93 8.84 -40.82 -0.36 2.57 16 30 H 0.40 4.79 8.49 -40.82 -0.35 4.44 16 31 H 0.08 1.66 7.99 -51.93 -0.41 1.25 16 32 H 0.08 1.66 7.99 -51.93 -0.42 1.24 16 33 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.60 7.03 -52.48 -0.37 0.23 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -33.06 333.09 -10.67 -43.73 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.69 Total: 3.41 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.71 Total: -5.78 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.33 Total: -41.47 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: 0.09 Total: -6.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -11.85 SS G_CDS: -2.69 Total: -14.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.06 -10.67 -43.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783756076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.379 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds