Wall clock time and date at job start Tue Mar 31 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21308 * 119.99885 * 2 1 4 4 C 1.46815 * 119.99863 * 179.97438 * 2 1 3 5 5 C 1.40078 * 120.09728 * 180.02562 * 4 2 1 6 6 C 1.36587 * 119.89899 * 180.29991 * 5 4 2 7 7 C 1.39252 * 120.09541 * 359.47092 * 6 5 4 8 8 N 1.39232 * 119.89681 * 180.25871 * 7 6 5 9 9 C 1.34771 * 119.99914 * 42.26185 * 8 7 6 10 10 S 1.71197 * 120.00364 * 5.54070 * 9 8 7 11 11 N 1.34785 * 119.99730 * 185.53693 * 9 8 7 12 12 C 1.46500 * 119.99727 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47183 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00061 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99656 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00173 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99663 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47070 * 60.00184 * 18 16 14 20 20 H 1.48497 * 109.47061 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47116 * 300.00460 * 18 16 14 22 22 C 1.39241 * 120.20008 * 0.50899 * 7 6 5 23 23 C 1.36584 * 120.10149 * 359.76972 * 22 7 6 24 24 H 1.09001 * 109.47497 * 240.00528 * 1 2 3 25 25 H 1.09007 * 109.47180 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47499 * 120.00101 * 1 2 3 27 27 H 1.07997 * 120.04978 * 0.02562 * 5 4 2 28 28 H 1.07992 * 119.95225 * 179.72282 * 6 5 4 29 29 H 0.97000 * 119.99805 * 222.26780 * 8 7 6 30 30 H 0.97000 * 119.99520 * 0.02562 * 11 9 8 31 31 H 1.09000 * 109.47511 * 299.99985 * 12 11 9 32 32 H 1.08998 * 109.47024 * 60.00201 * 12 11 9 33 33 H 1.09008 * 109.46604 * 299.99947 * 13 12 11 34 34 H 1.09003 * 109.47502 * 59.99743 * 13 12 11 35 35 H 0.97001 * 119.99588 * 180.02562 * 17 16 14 36 36 H 1.07996 * 119.94348 * 179.74798 * 22 7 6 37 37 H 1.08003 * 120.05368 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2410 -1.2715 0.0006 5 6 3.6418 -1.2739 0.0011 6 6 4.3206 -2.4591 -0.0046 7 6 3.6222 -3.6638 0.0003 8 7 4.3184 -4.8696 -0.0001 9 6 5.4063 -5.0198 0.7811 10 16 5.8501 -3.7825 1.8779 11 7 6.1449 -6.1443 0.6989 12 6 7.3271 -6.3078 1.5484 13 6 7.9797 -7.6611 1.2592 14 6 9.1955 -7.8296 2.1335 15 1 9.4750 -7.0494 2.8259 16 6 9.9509 -8.9800 2.0495 17 7 9.6108 -9.9299 1.2059 18 14 11.4584 -9.1885 3.1328 19 1 11.0542 -9.1283 4.5604 20 1 12.0910 -10.5026 2.8530 21 1 12.4280 -8.1008 2.8466 22 6 2.2298 -3.6662 0.0002 23 6 1.5428 -2.4857 0.0001 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 4.1842 -0.3400 0.0015 28 1 5.4005 -2.4620 -0.0087 29 1 4.0204 -5.6015 -0.5627 30 1 5.8936 -6.8452 0.0772 31 1 8.0388 -5.5094 1.3384 32 1 7.0304 -6.2637 2.5963 33 1 7.2682 -8.4598 1.4690 34 1 8.2765 -7.7048 0.2112 35 1 10.1421 -10.7393 1.1471 36 1 1.6924 -4.6029 -0.0002 37 1 0.4628 -2.4885 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783756076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:09 Heat of formation + Delta-G solvation = -19.859887 kcal Electronic energy + Delta-G solvation = -19436.583791 eV Core-core repulsion = 16304.060507 eV Total energy + Delta-G solvation = -3132.523284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47482 -40.35909 -39.00148 -36.79631 -35.08415 -32.69789 -32.28196 -31.33418 -29.55392 -27.08471 -25.38653 -24.41052 -23.43410 -23.04119 -20.89797 -19.81893 -19.23832 -18.49711 -17.65964 -17.08153 -16.74530 -16.53472 -16.27460 -15.94823 -15.86319 -15.43677 -15.11518 -14.63614 -14.37675 -14.28515 -13.75199 -13.60671 -13.34468 -12.99319 -12.96457 -12.86934 -12.58286 -12.40240 -12.33810 -12.02813 -11.70724 -11.47283 -10.90980 -10.76770 -10.57741 -10.13656 -9.53158 -9.07620 -8.39345 -8.27390 -6.36802 -0.58566 0.28659 0.50691 0.74832 1.33718 1.42936 1.43613 1.50551 1.53635 2.35978 2.50029 2.83371 3.08675 3.18944 3.78914 3.94830 4.19406 4.22487 4.31954 4.37901 4.41540 4.46011 4.70696 4.76419 4.78962 4.86382 4.96707 5.14371 5.18422 5.27131 5.34189 5.47642 5.49336 5.54055 5.71141 5.75751 5.97619 6.12009 6.29675 6.59715 6.76106 7.32720 8.83923 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047812 B = 0.002539 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.487783 B =11023.966281 C =11421.110812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.393 3.607 3 O -0.512 6.512 4 C -0.188 4.188 5 C -0.071 4.071 6 C -0.104 4.104 7 C 0.157 3.843 8 N -0.617 5.617 9 C 0.575 3.425 10 S -0.712 6.712 11 N -0.646 5.646 12 C 0.147 3.853 13 C 0.022 3.978 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.270 1.270 22 C -0.131 4.131 23 C -0.046 4.046 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.430 0.570 30 H 0.416 0.584 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.266 0.734 36 H 0.168 0.832 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.534 9.957 -7.648 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.275 3.725 3 O -0.391 6.391 4 C -0.190 4.190 5 C -0.091 4.091 6 C -0.127 4.127 7 C 0.063 3.937 8 N -0.246 5.246 9 C 0.212 3.788 10 S -0.584 6.584 11 N -0.271 5.271 12 C 0.024 3.976 13 C -0.016 4.016 14 C -0.583 4.583 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.786 3.214 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.151 4.151 23 C -0.065 4.065 24 H 0.137 0.863 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.273 0.727 30 H 0.255 0.745 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.185 0.815 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -21.714 11.059 -6.900 25.326 hybrid contribution 1.095 -1.520 -0.413 1.918 sum -20.619 9.540 -7.313 23.867 Atomic orbital electron populations 1.22296 0.89803 1.05891 1.06943 1.23131 0.93743 0.86631 0.68948 1.90550 1.73602 1.35869 1.39099 1.20771 0.93821 0.96265 1.08140 1.20934 0.94243 0.97600 0.96362 1.20948 1.01152 0.91691 0.98861 1.17891 0.91838 0.83694 1.00294 1.41909 1.24904 1.16158 1.41581 1.21826 0.82701 0.88554 0.85753 1.93650 1.82600 1.37992 1.44180 1.45303 1.26029 1.16106 1.39693 1.21733 0.83260 0.99267 0.93361 1.19184 0.95012 0.90624 0.96756 1.21358 1.11127 1.03282 1.22490 0.92149 1.25797 1.00822 0.95479 0.96803 1.70024 1.40916 1.08025 1.37450 0.85553 0.79167 0.77432 0.79277 1.19403 1.20687 1.19478 1.21015 0.90300 1.01161 1.02631 1.21348 1.01970 0.89087 0.94093 0.86335 0.90076 0.85843 0.86486 0.86137 0.72723 0.74458 0.91337 0.91285 0.96856 0.96964 0.92521 0.81492 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 8.92 71.24 0.64 -0.76 16 2 C 0.39 7.21 7.21 27.93 0.20 7.41 16 3 O -0.51 -14.26 17.07 -3.12 -0.05 -14.31 16 4 C -0.19 -3.52 5.87 -20.14 -0.12 -3.63 16 5 C -0.07 -1.79 9.54 22.33 0.21 -1.58 16 6 C -0.10 -2.76 7.78 22.13 0.17 -2.58 16 7 C 0.16 3.24 5.89 38.45 0.23 3.47 16 8 N -0.62 -11.98 5.29 -189.94 -1.01 -12.98 16 9 C 0.57 16.57 7.73 179.05 1.38 17.96 16 10 S -0.71 -27.96 25.07 -56.49 -1.42 -29.37 16 11 N -0.65 -18.60 5.56 -350.17 -1.95 -20.55 16 12 C 0.15 5.66 5.07 86.38 0.44 6.09 16 13 C 0.02 1.01 5.09 29.85 0.15 1.16 16 14 C -0.54 -28.97 9.11 25.60 0.23 -28.73 16 15 H 0.06 3.18 7.74 -2.92 -0.02 3.15 16 16 C 0.01 0.55 5.46 84.66 0.46 1.01 16 17 N -0.92 -52.12 13.29 21.45 0.28 -51.84 16 18 Si 0.96 42.62 29.54 68.60 2.03 44.64 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 C -0.13 -1.68 9.91 22.12 0.22 -1.46 16 23 C -0.05 -0.52 9.42 22.33 0.21 -0.31 16 24 H 0.12 0.34 8.08 -2.39 -0.02 0.32 16 25 H 0.08 0.68 8.12 -2.38 -0.02 0.66 16 26 H 0.12 0.19 8.08 -2.39 -0.02 0.17 16 27 H 0.12 3.23 7.64 -2.91 -0.02 3.20 16 28 H 0.12 3.84 6.29 -4.31 -0.03 3.81 16 29 H 0.43 4.64 8.84 -92.71 -0.82 3.82 16 30 H 0.42 9.26 8.49 -92.71 -0.79 8.47 16 31 H 0.07 2.85 7.99 -2.39 -0.02 2.83 16 32 H 0.07 2.86 7.99 -2.39 -0.02 2.84 16 33 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.18 0.34 7.03 -2.91 -0.02 0.32 16 Total: -1.00 -76.38 333.09 1.81 -74.57 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.51 Total: 11.79 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 4.43 Total: -1.96 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -2.67 Total: -85.37 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.05 Total: -14.31 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -27.96 SS G_CDS: -1.42 Total: -29.37 kcal Total: -76.38 1.81 -74.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783756076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.709 kcal (2) G-P(sol) polarization free energy of solvation -76.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds