Wall clock time and date at job start Tue Mar 31 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47544 * 37.58793 * 3 2 1 5 5 C 1.36032 * 117.00342 * 179.97438 * 4 3 2 6 6 C 1.38519 * 120.05412 * 0.27136 * 5 4 3 7 7 C 1.38255 * 120.04135 * 180.25206 * 6 5 4 8 8 C 1.38474 * 120.14564 * 359.45217 * 7 6 5 9 9 F 1.35094 * 119.94598 * 180.27413 * 8 7 6 10 10 C 1.38387 * 120.11036 * 0.29606 * 8 7 6 11 11 C 1.38710 * 119.96105 * 359.97290 * 10 8 7 12 12 N 1.40160 * 120.07540 * 180.02562 * 11 10 8 13 13 C 1.34775 * 119.99694 * 24.78087 * 12 11 10 14 14 O 1.21599 * 120.00311 * 5.63741 * 13 12 11 15 15 N 1.34780 * 120.00354 * 185.63527 * 13 12 11 16 16 C 1.46498 * 120.00302 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46953 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99938 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99851 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47232 * 60.00402 * 21 19 17 23 23 H 1.48508 * 109.47074 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47376 * 300.00138 * 21 19 17 25 25 H 4.38443 * 5.44394 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47599 * 277.58170 * 3 2 1 27 27 H 1.09006 * 109.47316 * 157.58741 * 3 2 1 28 28 H 1.08004 * 119.98578 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.93247 * 179.72718 * 7 6 5 30 30 H 1.08000 * 120.01947 * 179.97438 * 10 8 7 31 31 H 0.96998 * 120.00715 * 204.77936 * 12 11 10 32 32 H 0.97003 * 119.99408 * 359.97438 * 15 13 12 33 33 H 1.08994 * 109.47134 * 299.99305 * 16 15 13 34 34 H 1.08996 * 109.47154 * 60.00342 * 16 15 13 35 35 H 0.96999 * 120.00317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.0667 -0.8218 5 6 4.4715 -1.2070 -0.9309 6 6 5.3160 -0.3399 -0.2572 7 6 6.6866 -0.4795 -0.3725 8 6 7.2194 -1.4925 -1.1519 9 9 8.5593 -1.6286 -1.2572 10 6 6.3815 -2.3654 -1.8235 11 6 5.0056 -2.2261 -1.7155 12 7 4.1548 -3.1092 -2.3942 13 6 4.5881 -4.3417 -2.7251 14 8 5.6782 -4.7250 -2.3466 15 7 3.8131 -5.1496 -3.4757 16 6 4.2839 -6.4896 -3.8350 17 6 3.2380 -7.1822 -4.6701 18 1 2.3152 -6.6749 -4.9097 19 6 3.4598 -8.4633 -5.1293 20 7 4.5838 -9.0809 -4.8381 21 14 2.1637 -9.3216 -6.1651 22 1 1.9169 -8.5355 -7.4005 23 1 2.6408 -10.6800 -6.5292 24 1 0.9028 -9.4321 -5.3885 25 1 -1.0498 -0.0001 -0.0003 26 1 3.0094 -0.1348 1.0187 27 1 3.0089 0.9509 -0.3918 28 1 4.9035 0.4485 0.3549 29 1 7.3433 0.2003 0.1500 30 1 6.7985 -3.1548 -2.4313 31 1 3.2541 -2.8335 -2.6256 32 1 2.9433 -4.8440 -3.7773 33 1 5.2094 -6.4088 -4.4050 34 1 4.4647 -7.0664 -2.9281 35 1 4.7396 -9.9822 -5.1608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785825775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:47 Heat of formation + Delta-G solvation = -22.438856 kcal Electronic energy + Delta-G solvation = -21918.239022 eV Core-core repulsion = 18219.390729 eV Total energy + Delta-G solvation = -3698.848293 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.72772 -40.76041 -39.33701 -37.36200 -34.66908 -34.17506 -33.67676 -32.40401 -30.16483 -29.46882 -27.66808 -26.97107 -23.67166 -22.57911 -22.05929 -20.36596 -18.99342 -18.62917 -18.22123 -17.72501 -16.55732 -16.36971 -15.92160 -15.80482 -15.41067 -14.99510 -14.86537 -14.78456 -14.31792 -14.04542 -13.36441 -13.25697 -13.16886 -12.91056 -12.41525 -12.07954 -12.00886 -11.58900 -11.44341 -11.00289 -10.93829 -10.90863 -10.48052 -10.34738 -10.31954 -9.47754 -9.43343 -8.77721 -8.59200 -8.05945 -7.64301 -6.18157 -4.25444 1.13965 1.15518 1.93925 2.39973 3.00450 3.24866 3.29449 3.30132 3.31815 3.39749 3.86715 3.99951 4.28219 4.34881 4.58955 4.62872 4.83242 4.87877 4.93271 5.18086 5.20911 5.38570 5.48413 5.69776 5.87352 5.99126 6.20557 6.55044 6.76090 6.96630 7.14077 7.20629 7.35723 7.46511 7.49673 7.78344 7.96244 8.64114 8.79401 9.12114 9.41265 10.91942 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.003734 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.243326 B = 7497.622849 C = 9400.202564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.202 4.202 3 C 0.175 3.825 4 O -0.309 6.309 5 C 0.076 3.924 6 C -0.159 4.159 7 C -0.147 4.147 8 C 0.091 3.909 9 F -0.138 7.138 10 C -0.137 4.137 11 C 0.195 3.805 12 N -0.683 5.683 13 C 0.690 3.310 14 O -0.580 6.580 15 N -0.718 5.718 16 C 0.265 3.735 17 C -0.545 4.545 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.224 0.776 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.171 0.829 31 H 0.410 0.590 32 H 0.390 0.610 33 H 0.029 0.971 34 H 0.028 0.972 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 21.292 9.462 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.202 4.202 3 C 0.101 3.899 4 O -0.224 6.224 5 C 0.028 3.972 6 C -0.178 4.178 7 C -0.167 4.167 8 C 0.071 3.929 9 F -0.117 7.117 10 C -0.158 4.158 11 C 0.096 3.904 12 N -0.329 5.329 13 C 0.390 3.610 14 O -0.459 6.459 15 N -0.369 5.369 16 C 0.145 3.855 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.201 1.201 25 H 0.241 0.759 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.189 0.811 31 H 0.246 0.754 32 H 0.222 0.778 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.941 20.476 9.588 22.800 hybrid contribution -1.429 -0.135 -0.635 1.570 sum -4.370 20.341 8.952 22.650 Atomic orbital electron populations 1.25040 0.95900 0.97709 0.98722 1.22254 0.93547 1.02429 1.01960 1.19239 0.84920 0.90237 0.95481 1.86067 1.18749 1.50852 1.66729 1.18506 0.82221 0.97903 0.98553 1.20749 0.93003 1.01018 1.03048 1.20783 0.95191 0.99225 1.01532 1.17378 0.77370 0.97421 1.00731 1.91491 1.29782 1.95499 1.94919 1.21388 0.90966 1.01041 1.02453 1.16535 0.89276 0.90060 0.94485 1.42708 1.16998 1.13274 1.59968 1.16160 0.85026 0.79654 0.80115 1.90853 1.21385 1.74485 1.59143 1.45801 1.20331 1.18020 1.52773 1.19084 0.95598 0.75004 0.95862 1.21165 1.03215 1.00089 1.33883 0.91898 1.24934 0.95838 0.96993 0.96141 1.69961 1.24008 1.13566 1.44637 0.86454 0.81287 0.78627 0.80409 1.20050 1.21036 1.20069 0.75889 0.89471 0.89498 0.84323 0.84611 0.81144 0.75397 0.77761 0.95335 0.95391 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 19.25 29.55 0.57 -0.66 16 2 C -0.20 -1.86 13.73 -37.13 -0.51 -2.37 16 3 C 0.18 1.43 5.21 34.37 0.18 1.61 16 4 O -0.31 -3.56 9.51 -19.84 -0.19 -3.75 16 5 C 0.08 0.93 6.70 -39.10 -0.26 0.67 16 6 C -0.16 -1.57 9.03 -39.47 -0.36 -1.93 16 7 C -0.15 -1.60 10.02 -39.49 -0.40 -2.00 16 8 C 0.09 1.29 7.29 -39.44 -0.29 1.00 16 9 F -0.14 -2.05 17.26 2.25 0.04 -2.01 16 10 C -0.14 -2.23 8.69 -39.35 -0.34 -2.57 16 11 C 0.19 2.98 6.45 -83.49 -0.54 2.44 16 12 N -0.68 -10.93 5.29 -14.11 -0.07 -11.01 16 13 C 0.69 14.10 8.37 -86.92 -0.73 13.37 16 14 O -0.58 -13.91 13.51 5.28 0.07 -13.84 16 15 N -0.72 -15.08 5.55 -66.42 -0.37 -15.45 16 16 C 0.27 6.97 5.43 -5.19 -0.03 6.94 16 17 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 18 H 0.06 1.57 7.60 -52.48 -0.40 1.18 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.88 -25.90 13.29 55.43 0.74 -25.16 16 21 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.22 0.93 7.80 -54.10 -0.42 0.50 16 26 H 0.09 0.56 7.65 -51.93 -0.40 0.16 16 27 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 28 H 0.14 0.87 6.29 -52.48 -0.33 0.54 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.17 3.25 5.79 -52.49 -0.30 2.95 16 31 H 0.41 5.48 8.36 -40.82 -0.34 5.14 16 32 H 0.39 6.98 8.34 -40.82 -0.34 6.63 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -32.95 322.35 -6.40 -39.35 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.34 Total: 8.10 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -3.12 Total: 3.23 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.29 Total: -51.62 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.12 Total: -17.59 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.95 -6.40 -39.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785825775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.909 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds