Wall clock time and date at job start Tue Mar 31 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47544 * 37.58793 * 3 2 1 5 5 C 1.36032 * 117.00342 * 179.97438 * 4 3 2 6 6 C 1.38519 * 120.05412 * 0.27136 * 5 4 3 7 7 C 1.38255 * 120.04135 * 180.25206 * 6 5 4 8 8 C 1.38474 * 120.14564 * 359.45217 * 7 6 5 9 9 F 1.35094 * 119.94598 * 180.27413 * 8 7 6 10 10 C 1.38387 * 120.11036 * 0.29606 * 8 7 6 11 11 C 1.38710 * 119.96105 * 359.97290 * 10 8 7 12 12 N 1.40160 * 120.07540 * 180.02562 * 11 10 8 13 13 C 1.34775 * 119.99694 * 24.78087 * 12 11 10 14 14 O 1.21599 * 120.00311 * 5.63741 * 13 12 11 15 15 N 1.34780 * 120.00354 * 185.63527 * 13 12 11 16 16 C 1.46498 * 120.00302 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46953 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99938 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99851 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47232 * 60.00402 * 21 19 17 23 23 H 1.48508 * 109.47074 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47376 * 300.00138 * 21 19 17 25 25 H 4.38443 * 5.44394 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47599 * 277.58170 * 3 2 1 27 27 H 1.09006 * 109.47316 * 157.58741 * 3 2 1 28 28 H 1.08004 * 119.98578 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.93247 * 179.72718 * 7 6 5 30 30 H 1.08000 * 120.01947 * 179.97438 * 10 8 7 31 31 H 0.96998 * 120.00715 * 204.77936 * 12 11 10 32 32 H 0.97003 * 119.99408 * 359.97438 * 15 13 12 33 33 H 1.08994 * 109.47134 * 299.99305 * 16 15 13 34 34 H 1.08996 * 109.47154 * 60.00342 * 16 15 13 35 35 H 0.96999 * 120.00317 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.0667 -0.8218 5 6 4.4715 -1.2070 -0.9309 6 6 5.3160 -0.3399 -0.2572 7 6 6.6866 -0.4795 -0.3725 8 6 7.2194 -1.4925 -1.1519 9 9 8.5593 -1.6286 -1.2572 10 6 6.3815 -2.3654 -1.8235 11 6 5.0056 -2.2261 -1.7155 12 7 4.1548 -3.1092 -2.3942 13 6 4.5881 -4.3417 -2.7251 14 8 5.6782 -4.7250 -2.3466 15 7 3.8131 -5.1496 -3.4757 16 6 4.2839 -6.4896 -3.8350 17 6 3.2380 -7.1822 -4.6701 18 1 2.3152 -6.6749 -4.9097 19 6 3.4598 -8.4633 -5.1293 20 7 4.5838 -9.0809 -4.8381 21 14 2.1637 -9.3216 -6.1651 22 1 1.9169 -8.5355 -7.4005 23 1 2.6408 -10.6800 -6.5292 24 1 0.9028 -9.4321 -5.3885 25 1 -1.0498 -0.0001 -0.0003 26 1 3.0094 -0.1348 1.0187 27 1 3.0089 0.9509 -0.3918 28 1 4.9035 0.4485 0.3549 29 1 7.3433 0.2003 0.1500 30 1 6.7985 -3.1548 -2.4313 31 1 3.2541 -2.8335 -2.6256 32 1 2.9433 -4.8440 -3.7773 33 1 5.2094 -6.4088 -4.4050 34 1 4.4647 -7.0664 -2.9281 35 1 4.7396 -9.9822 -5.1608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785825775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:47 Heat of formation + Delta-G solvation = -45.731322 kcal Electronic energy + Delta-G solvation = -21919.249059 eV Core-core repulsion = 18219.390729 eV Total energy + Delta-G solvation = -3699.858330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.84122 -41.95267 -40.64319 -38.40180 -36.33094 -35.77488 -34.40279 -34.30730 -31.32051 -30.51981 -29.02782 -28.24108 -25.24161 -23.97726 -23.27819 -21.98334 -20.08151 -19.68824 -19.41338 -18.71449 -18.13099 -17.43448 -17.21455 -17.05874 -16.57256 -16.50958 -16.42090 -15.75431 -15.70003 -15.37640 -14.91804 -14.44066 -14.20104 -14.06776 -13.96692 -13.79745 -13.30727 -12.92642 -12.70196 -12.57770 -12.43508 -12.22690 -11.63046 -11.58229 -11.51837 -11.12242 -11.06509 -10.80628 -10.00328 -9.63057 -8.80365 -8.29303 -6.46166 0.09823 0.13472 1.24531 1.42942 1.47875 1.54720 1.61686 1.81659 1.98962 2.38345 2.56268 2.62924 3.05846 3.16610 3.38157 3.46671 3.78731 3.88648 4.13808 4.26465 4.31602 4.38326 4.68684 4.85785 4.97233 5.05058 5.08962 5.16130 5.23412 5.35759 5.42919 5.58189 5.69730 5.80533 6.08875 6.27810 6.57979 6.63864 7.07978 7.23526 7.51064 8.82745 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.003734 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.243326 B = 7497.622849 C = 9400.202564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.243 4.243 3 C 0.165 3.835 4 O -0.324 6.324 5 C 0.092 3.908 6 C -0.141 4.141 7 C -0.122 4.122 8 C 0.068 3.932 9 F -0.149 7.149 10 C -0.161 4.161 11 C 0.159 3.841 12 N -0.665 5.665 13 C 0.691 3.309 14 O -0.622 6.622 15 N -0.713 5.713 16 C 0.284 3.716 17 C -0.558 4.558 18 H 0.084 0.916 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.262 1.262 25 H 0.252 0.748 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.189 0.811 29 H 0.174 0.826 30 H 0.130 0.870 31 H 0.424 0.576 32 H 0.407 0.593 33 H -0.009 1.009 34 H -0.010 1.010 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 24.069 10.436 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.243 4.243 3 C 0.092 3.908 4 O -0.239 6.239 5 C 0.044 3.956 6 C -0.160 4.160 7 C -0.142 4.142 8 C 0.049 3.951 9 F -0.128 7.128 10 C -0.183 4.183 11 C 0.062 3.938 12 N -0.313 5.313 13 C 0.391 3.609 14 O -0.503 6.503 15 N -0.366 5.366 16 C 0.161 3.839 17 C -0.596 4.596 18 H 0.102 0.898 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.187 1.187 25 H 0.268 0.732 26 H 0.127 0.873 27 H 0.133 0.867 28 H 0.206 0.794 29 H 0.192 0.808 30 H 0.148 0.852 31 H 0.262 0.738 32 H 0.243 0.757 33 H 0.009 0.991 34 H 0.008 0.992 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.488 23.344 10.582 26.212 hybrid contribution -0.668 -0.831 -0.819 1.344 sum -6.156 22.514 9.763 25.300 Atomic orbital electron populations 1.25894 0.96902 0.96345 0.97473 1.22792 0.94548 1.03726 1.03203 1.19653 0.84633 0.90264 0.96220 1.86050 1.17970 1.52451 1.67450 1.18485 0.83211 0.96689 0.97173 1.21289 0.92111 1.00787 1.01802 1.21213 0.96224 0.97556 0.99166 1.17606 0.76797 0.98640 1.02107 1.91458 1.30461 1.95708 1.95143 1.21130 0.92205 1.01333 1.03604 1.16714 0.88822 0.91585 0.96685 1.42313 1.17655 1.11686 1.59640 1.16249 0.84243 0.80743 0.79641 1.90839 1.23196 1.75733 1.60519 1.45355 1.21199 1.16594 1.53441 1.18501 0.94621 0.77094 0.93639 1.21556 1.03778 1.00558 1.33662 0.89765 1.26048 0.98160 0.97843 0.97359 1.70130 1.26519 1.14083 1.46096 0.85189 0.78183 0.77032 0.78693 1.18663 1.21056 1.18663 0.73220 0.87342 0.86710 0.79356 0.80850 0.85236 0.73807 0.75743 0.99122 0.99228 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 19.25 74.32 1.43 -0.50 16 2 C -0.24 -3.81 13.73 31.12 0.43 -3.38 16 3 C 0.17 2.06 5.21 70.17 0.37 2.42 16 4 O -0.32 -6.60 9.51 -93.92 -0.89 -7.49 16 5 C 0.09 2.06 6.70 22.58 0.15 2.22 16 6 C -0.14 -2.17 9.03 22.34 0.20 -1.97 16 7 C -0.12 -2.24 10.02 22.33 0.22 -2.02 16 8 C 0.07 1.93 7.29 22.36 0.16 2.09 16 9 F -0.15 -4.53 17.26 44.97 0.78 -3.75 16 10 C -0.16 -5.55 8.69 22.42 0.19 -5.35 16 11 C 0.16 4.91 6.45 38.17 0.25 5.16 16 12 N -0.66 -21.90 5.29 -316.81 -1.68 -23.58 16 13 C 0.69 29.90 8.37 179.05 1.50 31.40 16 14 O -0.62 -32.31 13.51 -4.03 -0.05 -32.37 16 15 N -0.71 -31.30 5.55 -482.30 -2.68 -33.98 16 16 C 0.28 15.84 5.43 85.63 0.46 16.31 16 17 C -0.56 -30.50 9.28 25.60 0.24 -30.27 16 18 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 19 C 0.01 0.32 5.46 84.65 0.46 0.78 16 20 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 21 Si 0.99 42.38 29.54 68.60 2.03 44.41 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H 0.25 1.29 7.80 -4.43 -0.03 1.25 16 26 H 0.11 0.88 7.65 -2.39 -0.02 0.86 16 27 H 0.12 0.77 7.67 -2.38 -0.02 0.75 16 28 H 0.19 1.07 6.29 -2.91 -0.02 1.05 16 29 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.13 5.52 5.79 -2.91 -0.02 5.51 16 31 H 0.42 11.28 8.36 -92.71 -0.78 10.50 16 32 H 0.41 14.74 8.34 -92.71 -0.77 13.97 16 33 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -77.60 322.35 3.46 -74.14 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.39 Total: 21.80 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.07 Total: 16.90 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -4.07 Total: -113.63 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.95 Total: -39.86 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -77.60 3.46 -74.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785825775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.406 kcal (2) G-P(sol) polarization free energy of solvation -77.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds