Wall clock time and date at job start Tue Mar 31 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 115.55477 * 2 1 4 4 C 1.34777 * 119.99958 * 294.59223 * 3 2 1 5 5 S 1.71205 * 120.00066 * 3.64699 * 4 3 2 6 6 N 1.34779 * 120.00346 * 183.64371 * 4 3 2 7 7 C 1.39881 * 120.00011 * 176.46106 * 6 4 3 8 8 C 1.38976 * 120.03647 * 223.31674 * 7 6 4 9 9 C 1.38154 * 120.06963 * 179.97438 * 8 7 6 10 10 C 1.38178 * 120.13818 * 359.73202 * 9 8 7 11 11 C 1.38912 * 120.06823 * 0.54863 * 10 9 8 12 12 O 1.35752 * 120.03070 * 179.72348 * 11 10 9 13 13 C 1.34833 * 117.00004 * 353.02606 * 12 11 10 14 14 H 1.08006 * 119.99670 * 5.09784 * 13 12 11 15 15 C 1.38653 * 120.00363 * 185.09364 * 13 12 11 16 16 N 1.31561 * 119.99384 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00319 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46940 * 60.00051 * 17 15 13 19 19 H 1.48499 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46908 * 300.00373 * 17 15 13 21 21 C 1.38725 * 120.03865 * 43.30389 * 7 6 4 22 22 C 1.53005 * 117.49494 * 145.67010 * 2 1 3 23 23 C 1.53005 * 117.49363 * 214.32577 * 2 1 3 24 24 H 1.08999 * 109.46756 * 63.40607 * 1 2 3 25 25 H 1.08995 * 109.47054 * 183.41053 * 1 2 3 26 26 H 1.09004 * 109.46440 * 303.41168 * 1 2 3 27 27 H 0.97002 * 120.00362 * 114.59705 * 3 2 1 28 28 H 0.96996 * 119.99490 * 356.45769 * 6 4 3 29 29 H 1.08006 * 119.96455 * 359.96453 * 8 7 6 30 30 H 1.07992 * 119.93410 * 180.02562 * 9 8 7 31 31 H 1.07994 * 119.96696 * 180.27152 * 10 9 8 32 32 H 0.97004 * 119.99681 * 179.97438 * 16 15 13 33 33 H 1.07996 * 120.06879 * 359.97438 * 21 7 6 34 34 H 1.08998 * 117.50057 * 214.99432 * 22 2 1 35 35 H 1.08998 * 117.50113 * 0.02562 * 22 2 1 36 36 H 1.08996 * 117.50368 * 359.97438 * 23 2 1 37 37 H 1.09002 * 117.49629 * 145.00112 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1620 1.3216 0.0000 4 6 2.0144 2.1391 -1.0613 5 16 1.0128 1.6721 -2.3689 6 7 2.6553 3.3243 -1.0934 7 6 2.5616 4.1397 -2.2261 8 6 3.6950 4.7710 -2.7245 9 6 3.6034 5.5761 -3.8434 10 6 2.3864 5.7519 -4.4738 11 6 1.2488 5.1283 -3.9772 12 8 0.0525 5.3061 -4.5938 13 6 0.0072 6.2105 -5.5927 14 1 0.9139 6.6948 -5.9242 15 6 -1.2033 6.5189 -6.1945 16 7 -2.3077 5.9293 -5.7903 17 14 -1.2660 7.7714 -7.5789 18 1 -0.4137 7.3090 -8.7037 19 1 -2.6668 7.9203 -8.0486 20 1 -0.7669 9.0801 -7.0853 21 6 1.3374 4.3190 -2.8534 22 6 2.2364 -1.1208 0.7654 23 6 2.2364 -1.1209 -0.7653 24 1 -0.3633 0.4601 -0.9189 25 1 -0.3633 -1.0258 0.0611 26 1 -0.3632 0.5659 0.8579 27 1 2.6867 1.6084 0.7638 28 1 3.1815 3.6119 -0.3309 29 1 4.6484 4.6322 -2.2364 30 1 4.4855 6.0652 -4.2291 31 1 2.3187 6.3783 -5.3509 32 1 -3.1547 6.1452 -6.2110 33 1 0.4553 3.8290 -2.4684 34 1 3.1714 -0.8748 1.2689 35 1 1.6112 -1.8583 1.2686 36 1 1.6112 -1.8584 -1.2684 37 1 3.1713 -0.8749 -1.2689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789195510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:31 Heat of formation + Delta-G solvation = 60.681039 kcal Electronic energy + Delta-G solvation = -20374.081336 eV Core-core repulsion = 17245.050568 eV Total energy + Delta-G solvation = -3129.030768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.91825 -38.98865 -37.63683 -35.70905 -33.17866 -32.17065 -29.46707 -28.66211 -28.25034 -25.24283 -24.45817 -22.74485 -21.85127 -21.48273 -20.54304 -18.40205 -18.32823 -17.18050 -16.57502 -15.53885 -15.30263 -15.07821 -14.93050 -14.52449 -14.16530 -13.67744 -13.40611 -13.14853 -13.03399 -12.62584 -12.47129 -12.23396 -11.77666 -11.63637 -11.47090 -11.12391 -10.98741 -10.76951 -10.71463 -10.66972 -10.43284 -10.19248 -9.50395 -9.28613 -8.75498 -8.04816 -7.45108 -7.15624 -6.41490 -6.34329 -3.92206 1.31781 2.03869 2.34380 2.41375 2.66636 3.19378 3.20635 3.23427 3.45413 3.50671 4.05276 4.43773 4.58457 4.61938 4.71407 5.18571 5.28267 5.31119 5.35380 5.61897 5.67379 5.73131 5.79284 5.81985 5.88055 6.04973 6.19933 6.20286 6.45725 6.48421 6.55645 6.89249 7.05246 7.07242 7.14158 7.38316 7.45595 7.56568 7.87386 8.09778 9.10039 9.83114 10.83257 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.003910 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.396564 B = 7158.972431 C = 8051.455721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.117 3.883 3 N -0.664 5.664 4 C 0.550 3.450 5 S -0.585 6.585 6 N -0.623 5.623 7 C 0.146 3.854 8 C -0.217 4.217 9 C -0.071 4.071 10 C -0.231 4.231 11 C 0.159 3.841 12 O -0.169 6.169 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.859 5.859 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.271 1.271 21 C -0.132 4.132 22 C -0.177 4.177 23 C -0.155 4.155 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.393 0.607 28 H 0.400 0.600 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.270 0.730 33 H 0.147 0.853 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.030 -8.583 14.002 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.030 3.970 3 N -0.295 5.295 4 C 0.195 3.805 5 S -0.455 6.455 6 N -0.246 5.246 7 C 0.054 3.946 8 C -0.238 4.238 9 C -0.090 4.090 10 C -0.251 4.251 11 C 0.103 3.897 12 O -0.072 6.072 13 C -0.467 4.467 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.493 5.493 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.154 4.154 22 C -0.215 4.215 23 C -0.194 4.194 24 H 0.127 0.873 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.230 0.770 28 H 0.237 0.763 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.807 -9.088 13.032 18.671 hybrid contribution 1.273 1.145 0.755 1.871 sum 11.080 -7.942 13.788 19.389 Atomic orbital electron populations 1.21893 0.89855 1.02621 1.05351 1.20607 0.93154 0.76960 1.06312 1.44297 1.52466 1.15704 1.17001 1.22502 0.86093 0.81924 0.89998 1.93606 1.41747 1.82123 1.27977 1.42160 1.48166 1.15860 1.18429 1.16850 0.93980 0.94932 0.88856 1.20214 0.95498 1.06844 1.01240 1.20417 0.96712 0.97394 0.94479 1.21225 0.92669 1.07240 1.03970 1.19041 0.86653 0.92788 0.91171 1.84009 1.25637 1.53498 1.44104 1.21286 0.95383 1.18704 1.11322 0.89160 1.25279 0.94187 0.98232 0.98821 1.70055 0.98558 1.40287 1.40407 0.85806 0.77841 0.79844 0.80058 1.19525 1.20345 1.19578 1.20472 0.97792 1.00399 0.96780 1.23489 1.02180 0.99922 0.95938 1.23319 1.02709 1.00319 0.93011 0.87296 0.91522 0.92736 0.77013 0.76348 0.87760 0.87066 0.85455 0.92038 0.83541 0.88700 0.87387 0.87356 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.59 37.16 0.36 -1.23 16 2 C 0.12 1.21 1.97 -131.82 -0.26 0.95 16 3 N -0.66 -7.00 5.46 -49.30 -0.27 -7.27 16 4 C 0.55 8.19 7.76 -86.92 -0.67 7.51 16 5 S -0.58 -11.88 22.43 -107.50 -2.41 -14.30 16 6 N -0.62 -8.68 5.32 -11.42 -0.06 -8.74 16 7 C 0.15 2.67 5.98 -83.73 -0.50 2.17 16 8 C -0.22 -3.68 9.97 -39.34 -0.39 -4.07 16 9 C -0.07 -1.29 10.03 -39.63 -0.40 -1.69 16 10 C -0.23 -5.09 9.16 -39.35 -0.36 -5.45 16 11 C 0.16 3.98 6.64 -39.13 -0.26 3.72 16 12 O -0.17 -5.03 9.76 0.04 0.00 -5.03 16 13 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 14 H 0.09 2.36 5.21 -52.48 -0.27 2.09 16 15 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 16 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 17 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 C -0.13 -2.98 7.81 -39.20 -0.31 -3.28 16 22 C -0.18 -1.29 10.16 -26.69 -0.27 -1.56 16 23 C -0.15 -1.54 10.11 -26.69 -0.27 -1.81 16 24 H 0.11 1.65 5.59 -49.05 -0.27 1.38 16 25 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.39 2.76 8.85 -40.82 -0.36 2.40 16 28 H 0.40 3.84 8.84 -40.82 -0.36 3.48 16 29 H 0.10 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.13 2.78 5.65 -52.49 -0.30 2.48 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.15 3.56 5.90 -39.55 -0.23 3.33 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -34.66 324.95 -9.56 -44.23 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.31 Total: 10.05 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.14 Total: -14.59 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.43 Total: -41.16 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: 0.00 Total: -5.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -11.88 SS G_CDS: -2.41 Total: -14.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.66 -9.56 -44.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789195510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.906 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds