Wall clock time and date at job start Tue Mar 31 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 115.55477 * 2 1 4 4 C 1.34777 * 119.99958 * 294.59223 * 3 2 1 5 5 S 1.71205 * 120.00066 * 3.64699 * 4 3 2 6 6 N 1.34779 * 120.00346 * 183.64371 * 4 3 2 7 7 C 1.39881 * 120.00011 * 176.46106 * 6 4 3 8 8 C 1.38976 * 120.03647 * 223.31674 * 7 6 4 9 9 C 1.38154 * 120.06963 * 179.97438 * 8 7 6 10 10 C 1.38178 * 120.13818 * 359.73202 * 9 8 7 11 11 C 1.38912 * 120.06823 * 0.54863 * 10 9 8 12 12 O 1.35752 * 120.03070 * 179.72348 * 11 10 9 13 13 C 1.34833 * 117.00004 * 353.02606 * 12 11 10 14 14 H 1.08006 * 119.99670 * 5.09784 * 13 12 11 15 15 C 1.38653 * 120.00363 * 185.09364 * 13 12 11 16 16 N 1.31561 * 119.99384 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00319 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46940 * 60.00051 * 17 15 13 19 19 H 1.48499 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46908 * 300.00373 * 17 15 13 21 21 C 1.38725 * 120.03865 * 43.30389 * 7 6 4 22 22 C 1.53005 * 117.49494 * 145.67010 * 2 1 3 23 23 C 1.53005 * 117.49363 * 214.32577 * 2 1 3 24 24 H 1.08999 * 109.46756 * 63.40607 * 1 2 3 25 25 H 1.08995 * 109.47054 * 183.41053 * 1 2 3 26 26 H 1.09004 * 109.46440 * 303.41168 * 1 2 3 27 27 H 0.97002 * 120.00362 * 114.59705 * 3 2 1 28 28 H 0.96996 * 119.99490 * 356.45769 * 6 4 3 29 29 H 1.08006 * 119.96455 * 359.96453 * 8 7 6 30 30 H 1.07992 * 119.93410 * 180.02562 * 9 8 7 31 31 H 1.07994 * 119.96696 * 180.27152 * 10 9 8 32 32 H 0.97004 * 119.99681 * 179.97438 * 16 15 13 33 33 H 1.07996 * 120.06879 * 359.97438 * 21 7 6 34 34 H 1.08998 * 117.50057 * 214.99432 * 22 2 1 35 35 H 1.08998 * 117.50113 * 0.02562 * 22 2 1 36 36 H 1.08996 * 117.50368 * 359.97438 * 23 2 1 37 37 H 1.09002 * 117.49629 * 145.00112 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1620 1.3216 0.0000 4 6 2.0144 2.1391 -1.0613 5 16 1.0128 1.6721 -2.3689 6 7 2.6553 3.3243 -1.0934 7 6 2.5616 4.1397 -2.2261 8 6 3.6950 4.7710 -2.7245 9 6 3.6034 5.5761 -3.8434 10 6 2.3864 5.7519 -4.4738 11 6 1.2488 5.1283 -3.9772 12 8 0.0525 5.3061 -4.5938 13 6 0.0072 6.2105 -5.5927 14 1 0.9139 6.6948 -5.9242 15 6 -1.2033 6.5189 -6.1945 16 7 -2.3077 5.9293 -5.7903 17 14 -1.2660 7.7714 -7.5789 18 1 -0.4137 7.3090 -8.7037 19 1 -2.6668 7.9203 -8.0486 20 1 -0.7669 9.0801 -7.0853 21 6 1.3374 4.3190 -2.8534 22 6 2.2364 -1.1208 0.7654 23 6 2.2364 -1.1209 -0.7653 24 1 -0.3633 0.4601 -0.9189 25 1 -0.3633 -1.0258 0.0611 26 1 -0.3632 0.5659 0.8579 27 1 2.6867 1.6084 0.7638 28 1 3.1815 3.6119 -0.3309 29 1 4.6484 4.6322 -2.2364 30 1 4.4855 6.0652 -4.2291 31 1 2.3187 6.3783 -5.3509 32 1 -3.1547 6.1452 -6.2110 33 1 0.4553 3.8290 -2.4684 34 1 3.1714 -0.8748 1.2689 35 1 1.6112 -1.8583 1.2686 36 1 1.6112 -1.8584 -1.2684 37 1 3.1713 -0.8749 -1.2689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789195510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:30 Heat of formation + Delta-G solvation = 36.492074 kcal Electronic energy + Delta-G solvation = -20375.130248 eV Core-core repulsion = 17245.050568 eV Total energy + Delta-G solvation = -3130.079680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27388 -40.35939 -39.10334 -37.18821 -34.44800 -34.12063 -31.13768 -30.01125 -29.36560 -27.28303 -25.76862 -23.60786 -23.37925 -22.89791 -21.72761 -20.02816 -19.61962 -18.94405 -17.82836 -16.87788 -16.75639 -16.51596 -16.38971 -15.87638 -15.77884 -15.44194 -14.95469 -14.45634 -14.20874 -14.06579 -13.61197 -13.44968 -13.26342 -13.00167 -12.84377 -12.57431 -12.43514 -12.33229 -12.15574 -12.13978 -11.71596 -11.26790 -11.10104 -10.76482 -10.50499 -9.57799 -9.04536 -8.79574 -8.40399 -8.01131 -6.08406 -0.04688 0.68525 0.78803 0.90198 1.35737 1.38578 1.49054 1.54002 2.21352 2.44123 2.72574 2.86603 3.21715 3.58937 3.65301 3.87500 3.96082 4.19302 4.32443 4.38327 4.45571 4.65841 4.71628 4.80672 4.83436 4.88743 4.97742 5.01002 5.14072 5.17963 5.25298 5.40838 5.50326 5.61305 5.67661 5.78218 5.89471 6.09373 6.23778 6.40334 7.03004 7.88929 8.83255 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.003910 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.396564 B = 7158.972431 C = 8051.455721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.086 3.914 3 N -0.628 5.628 4 C 0.580 3.420 5 S -0.703 6.703 6 N -0.605 5.605 7 C 0.157 3.843 8 C -0.182 4.182 9 C -0.065 4.065 10 C -0.238 4.238 11 C 0.116 3.884 12 O -0.233 6.233 13 C -0.412 4.412 14 H 0.105 0.895 15 C -0.028 4.028 16 N -0.924 5.924 17 Si 1.021 2.979 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.253 1.253 21 C -0.151 4.151 22 C -0.129 4.129 23 C -0.171 4.171 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.420 0.580 28 H 0.429 0.571 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.270 0.730 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.702 -8.481 16.614 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.001 4.001 3 N -0.258 5.258 4 C 0.219 3.781 5 S -0.574 6.574 6 N -0.231 5.231 7 C 0.064 3.936 8 C -0.202 4.202 9 C -0.084 4.084 10 C -0.257 4.257 11 C 0.064 3.936 12 O -0.140 6.140 13 C -0.488 4.488 14 H 0.122 0.878 15 C -0.224 4.224 16 N -0.562 5.562 17 Si 0.840 3.160 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.177 1.177 21 C -0.174 4.174 22 C -0.166 4.166 23 C -0.209 4.209 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.261 0.739 28 H 0.271 0.729 29 H 0.178 0.822 30 H 0.176 0.824 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.120 0.880 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.579 -9.015 15.763 23.287 hybrid contribution 0.142 0.919 0.294 0.975 sum 14.721 -8.096 16.057 23.240 Atomic orbital electron populations 1.21764 0.91100 1.03405 1.03247 1.20836 0.92748 0.77069 1.09468 1.44200 1.50634 1.15023 1.15935 1.21805 0.84514 0.82408 0.89411 1.94013 1.46749 1.83912 1.32693 1.41818 1.48123 1.14856 1.18336 1.16903 0.92845 0.94553 0.89328 1.20831 0.96693 1.03218 0.99506 1.20933 0.96412 0.96916 0.94143 1.21390 0.93372 1.06834 1.04154 1.19591 0.86678 0.94763 0.92544 1.83979 1.28365 1.55670 1.45978 1.21849 0.96363 1.18996 1.11598 0.87784 1.26664 0.93373 1.00569 1.01832 1.70237 0.99403 1.43407 1.43169 0.84624 0.78146 0.77065 0.76177 1.18174 1.19892 1.17743 1.20457 0.99050 1.00664 0.97276 1.23630 1.02459 0.96775 0.93745 1.23315 1.02064 1.00037 0.95520 0.91623 0.89695 0.92220 0.73900 0.72852 0.82190 0.82426 0.86025 0.92064 0.86445 0.86064 0.85308 0.88001 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.59 71.98 0.69 -2.41 16 2 C 0.09 1.59 1.97 3.61 0.01 1.60 16 3 N -0.63 -11.36 5.46 -309.87 -1.69 -13.05 16 4 C 0.58 16.47 7.76 179.05 1.39 17.86 16 5 S -0.70 -30.37 22.43 -56.49 -1.27 -31.64 16 6 N -0.60 -14.96 5.32 -190.04 -1.01 -15.97 16 7 C 0.16 5.44 5.98 38.15 0.23 5.66 16 8 C -0.18 -5.26 9.97 22.43 0.22 -5.04 16 9 C -0.07 -2.13 10.03 22.24 0.22 -1.90 16 10 C -0.24 -10.49 9.16 22.42 0.21 -10.28 16 11 C 0.12 6.15 6.64 22.56 0.15 6.30 16 12 O -0.23 -15.08 9.76 -22.79 -0.22 -15.31 16 13 C -0.41 -25.16 9.49 67.92 0.64 -24.51 16 14 H 0.10 5.72 5.21 -2.91 -0.02 5.70 16 15 C -0.03 -1.64 5.49 84.83 0.47 -1.18 16 16 N -0.92 -60.13 13.67 21.61 0.30 -59.83 16 17 Si 1.02 44.69 29.55 68.60 2.03 46.71 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 21 C -0.15 -7.16 7.81 22.51 0.18 -6.99 16 22 C -0.13 -1.29 10.16 30.62 0.31 -0.98 16 23 C -0.17 -3.09 10.11 30.62 0.31 -2.78 16 24 H 0.07 2.15 5.59 -4.22 -0.02 2.13 16 25 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 26 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.42 3.74 8.85 -92.71 -0.82 2.92 16 28 H 0.43 5.91 8.84 -92.71 -0.82 5.09 16 29 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.12 5.40 5.65 -2.91 -0.02 5.39 16 32 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 33 H 0.12 6.25 5.90 -11.14 -0.07 6.19 16 34 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -89.14 324.95 2.58 -86.56 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.57 Total: 27.18 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 5.02 Total: -24.65 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.41 Total: -88.85 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.22 Total: -15.31 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -30.37 SS G_CDS: -1.27 Total: -31.64 kcal Total: -89.14 2.58 -86.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789195510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.048 kcal (2) G-P(sol) polarization free energy of solvation -89.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds