Wall clock time and date at job start Tue Mar 31 2020 07:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00199 * 2 1 4 4 C 1.52996 * 109.47140 * 159.74832 * 3 2 1 5 5 F 1.39896 * 109.47317 * 306.07793 * 4 3 2 6 6 F 1.39905 * 109.47387 * 66.07656 * 4 3 2 7 7 C 1.46897 * 111.00294 * 236.04426 * 2 1 3 8 8 N 1.46508 * 109.46909 * 289.34054 * 7 2 1 9 9 N 1.40163 * 126.14681 * 269.95461 * 8 7 2 10 10 C 1.32239 * 107.75746 * 179.76238 * 9 8 7 11 11 C 1.40115 * 125.92797 * 180.29395 * 10 9 8 12 12 H 1.08000 * 120.00196 * 180.16239 * 11 10 9 13 13 C 1.40039 * 119.99700 * 0.16138 * 11 10 9 14 14 N 1.30797 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46698 * 60.00365 * 15 13 11 17 17 H 1.48494 * 109.46992 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47141 * 300.00593 * 15 13 11 19 19 N 1.38498 * 108.14551 * 0.43359 * 10 9 8 20 20 C 1.46505 * 125.83192 * 179.82804 * 19 10 9 21 21 C 1.34725 * 108.33261 * 359.55982 * 19 10 9 22 22 S 1.71206 * 125.97631 * 180.26610 * 21 19 10 23 23 H 1.08997 * 109.47300 * 190.04604 * 1 2 3 24 24 H 1.09004 * 109.47103 * 310.05120 * 1 2 3 25 25 H 1.09000 * 109.46892 * 70.03944 * 1 2 3 26 26 H 1.09004 * 109.46776 * 279.74445 * 3 2 1 27 27 H 1.08999 * 109.47299 * 39.74783 * 3 2 1 28 28 H 1.09000 * 109.47415 * 186.07452 * 4 3 2 29 29 H 1.09002 * 109.47693 * 169.33924 * 7 2 1 30 30 H 1.09002 * 109.47010 * 49.33623 * 7 2 1 31 31 H 0.97003 * 119.99970 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.46764 * 269.71380 * 20 19 10 33 33 H 1.09004 * 109.46881 * 149.72077 * 20 19 10 34 34 H 1.08992 * 109.47607 * 29.71166 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4416 1.3625 0.4993 5 9 3.5023 0.7214 1.7412 6 9 4.2475 0.6795 -0.4179 7 6 1.9954 -0.7660 -1.1375 8 7 1.7434 -2.1933 -0.9237 9 7 2.5985 -3.0960 -0.2769 10 6 2.0127 -4.2816 -0.2830 11 6 2.5338 -5.4590 0.2696 12 1 1.9721 -6.3793 0.2076 13 6 3.7830 -5.4423 0.9024 14 7 4.4630 -4.3276 0.9779 15 14 4.4774 -7.0119 1.6399 16 1 4.6288 -8.0347 0.5741 17 1 5.8027 -6.7292 2.2472 18 1 3.5525 -7.5192 2.6850 19 7 0.7962 -4.1582 -0.9334 20 6 -0.1674 -5.2378 -1.1623 21 6 0.6476 -2.8745 -1.3144 22 16 -0.6976 -2.2222 -2.1487 23 1 -0.3634 -1.0119 0.1793 24 1 -0.3633 0.6613 0.7867 25 1 -0.3633 0.3508 -0.9659 26 1 1.9632 1.7729 -1.0129 27 1 1.3880 1.9938 0.6571 28 1 3.7969 2.3878 0.6020 29 1 3.0685 -0.5956 -1.2249 30 1 1.5005 -0.4429 -2.0534 31 1 5.3282 -4.3160 1.4166 32 1 0.0469 -5.7197 -2.1162 33 1 -1.1765 -4.8260 -1.1818 34 1 -0.0894 -5.9707 -0.3594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794626966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:51 Heat of formation + Delta-G solvation = -10.133147 kcal Electronic energy + Delta-G solvation = -22187.691414 eV Core-core repulsion = 18533.653134 eV Total energy + Delta-G solvation = -3654.038280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.66513 -46.65215 -40.85553 -37.36133 -34.21250 -33.79428 -30.88607 -29.53990 -28.10217 -26.53681 -25.72692 -23.71408 -22.00745 -21.00135 -20.84188 -17.80198 -17.46525 -17.11272 -16.62197 -16.41307 -15.71824 -15.47788 -14.98165 -14.81936 -14.42455 -14.00278 -13.69239 -13.41096 -13.06479 -12.98251 -12.45729 -12.23165 -12.18449 -11.99462 -11.85514 -11.77293 -11.46600 -11.38454 -11.03232 -10.66176 -10.54032 -10.49221 -10.01697 -9.49389 -9.19698 -8.84731 -8.25235 -6.98759 -6.79063 -6.65929 -5.09116 2.30488 2.56608 2.84054 2.94299 2.97052 3.32951 3.57941 3.68562 3.85592 4.04290 4.24000 4.37597 4.56862 4.89663 5.03118 5.20059 5.37958 5.46293 5.55459 5.61557 5.85913 5.87595 6.01249 6.10101 6.29238 6.48774 6.56697 6.84886 7.01436 7.02715 7.08962 7.59837 7.79743 8.27516 8.39717 9.19095 9.99574 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.007216 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.227783 B = 3879.229864 C = 5622.228464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.548 5.548 3 C 0.009 3.991 4 C 0.268 3.732 5 F -0.191 7.191 6 F -0.202 7.202 7 C 0.308 3.692 8 N -0.365 5.365 9 N -0.325 5.325 10 C 0.370 3.630 11 C -0.439 4.439 12 H 0.096 0.904 13 C 0.075 3.925 14 N -0.732 5.732 15 Si 0.928 3.072 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.262 1.262 19 N -0.513 5.513 20 C 0.100 3.900 21 C 0.463 3.537 22 S -0.720 6.720 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.286 0.714 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 6.392 1.119 6.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.274 5.274 3 C -0.121 4.121 4 C 0.214 3.786 5 F -0.172 7.172 6 F -0.183 7.183 7 C 0.096 3.904 8 N -0.151 5.151 9 N -0.157 5.157 10 C 0.121 3.879 11 C -0.480 4.480 12 H 0.114 0.886 13 C -0.152 4.152 14 N -0.356 5.356 15 Si 0.751 3.249 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.187 1.187 19 N -0.214 5.214 20 C -0.043 4.043 21 C 0.093 3.907 22 S -0.596 6.596 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.138 0.862 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.792 7.244 1.419 7.424 hybrid contribution 0.143 -1.163 -0.084 1.175 sum 0.935 6.081 1.335 6.296 Atomic orbital electron populations 1.22646 0.84788 1.03702 1.00495 1.61791 1.09939 1.11160 1.44495 1.23169 0.94695 0.91703 1.02536 1.21970 0.90464 0.91886 0.74305 1.93032 1.96964 1.84583 1.42622 1.92903 1.75637 1.82724 1.67070 1.22215 1.02329 0.74483 0.91343 1.49127 1.13249 1.08791 1.43893 1.79501 1.12210 0.95542 1.28400 1.21371 0.80005 0.95362 0.91164 1.18295 1.03311 0.92558 1.33886 0.88556 1.25839 0.96057 0.98399 0.94878 1.69878 1.11018 1.26596 1.28112 0.86029 0.78628 0.80477 0.79755 1.18678 1.19898 1.18671 1.45976 1.19066 1.07590 1.48788 1.21757 0.92328 0.88104 1.02104 1.22911 0.91528 0.84797 0.91455 1.92670 1.27557 1.78908 1.60419 0.90333 0.92502 0.93551 0.91372 0.87573 0.87365 0.86165 0.90674 0.90230 0.91505 0.89250 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 8.27 60.06 0.50 1.04 16 2 N -0.55 -9.78 4.63 -246.85 -1.14 -10.93 16 3 C 0.01 0.11 5.38 -3.83 -0.02 0.09 16 4 C 0.27 3.47 5.58 37.16 0.21 3.68 16 5 F -0.19 -3.28 17.15 2.25 0.04 -3.24 16 6 F -0.20 -3.23 14.60 2.25 0.03 -3.20 16 7 C 0.31 6.17 5.80 -63.31 -0.37 5.81 16 8 N -0.37 -8.79 3.67 -65.04 -0.24 -9.02 16 9 N -0.33 -8.69 10.77 31.21 0.34 -8.35 16 10 C 0.37 9.41 7.50 -155.28 -1.16 8.24 16 11 C -0.44 -10.51 8.98 -38.20 -0.34 -10.86 16 12 H 0.10 2.05 7.11 -52.49 -0.37 1.68 16 13 C 0.08 1.75 5.50 -17.32 -0.10 1.66 16 14 N -0.73 -18.45 11.90 55.55 0.66 -17.79 16 15 Si 0.93 17.10 29.56 -169.99 -5.03 12.08 16 16 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 17 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 19 N -0.51 -11.91 3.17 -124.66 -0.39 -12.30 16 20 C 0.10 1.82 10.65 59.85 0.64 2.46 16 21 C 0.46 11.14 6.84 -86.94 -0.59 10.55 16 22 S -0.72 -17.26 27.07 -107.50 -2.91 -20.17 16 23 H 0.08 1.68 6.18 -51.93 -0.32 1.36 16 24 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 25 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 26 H 0.07 0.71 7.99 -51.93 -0.41 0.30 16 27 H 0.11 1.05 7.72 -51.93 -0.40 0.65 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.12 2.41 5.20 -51.93 -0.27 2.14 16 30 H 0.08 1.46 7.48 -51.93 -0.39 1.08 16 31 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.59 7.61 -51.93 -0.40 1.20 16 34 H 0.08 1.35 7.31 -51.93 -0.38 0.98 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -32.31 304.98 -9.02 -41.33 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.73 Total: 4.33 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: -1.24 Total: 22.67 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.78 Total: -58.39 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.07 Total: -6.44 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 16 Polarization: -17.26 SS G_CDS: -2.91 Total: -20.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.31 -9.02 -41.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794626966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.196 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds