Wall clock time and date at job start Tue Mar 31 2020 07:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00199 * 2 1 4 4 C 1.52996 * 109.47140 * 159.74832 * 3 2 1 5 5 F 1.39896 * 109.47317 * 306.07793 * 4 3 2 6 6 F 1.39905 * 109.47387 * 66.07656 * 4 3 2 7 7 C 1.46897 * 111.00294 * 236.04426 * 2 1 3 8 8 N 1.46508 * 109.46909 * 289.34054 * 7 2 1 9 9 N 1.40163 * 126.14681 * 269.95461 * 8 7 2 10 10 C 1.32239 * 107.75746 * 179.76238 * 9 8 7 11 11 C 1.40115 * 125.92797 * 180.29395 * 10 9 8 12 12 H 1.08000 * 120.00196 * 180.16239 * 11 10 9 13 13 C 1.40039 * 119.99700 * 0.16138 * 11 10 9 14 14 N 1.30797 * 120.00236 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46698 * 60.00365 * 15 13 11 17 17 H 1.48494 * 109.46992 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47141 * 300.00593 * 15 13 11 19 19 N 1.38498 * 108.14551 * 0.43359 * 10 9 8 20 20 C 1.46505 * 125.83192 * 179.82804 * 19 10 9 21 21 C 1.34725 * 108.33261 * 359.55982 * 19 10 9 22 22 S 1.71206 * 125.97631 * 180.26610 * 21 19 10 23 23 H 1.08997 * 109.47300 * 190.04604 * 1 2 3 24 24 H 1.09004 * 109.47103 * 310.05120 * 1 2 3 25 25 H 1.09000 * 109.46892 * 70.03944 * 1 2 3 26 26 H 1.09004 * 109.46776 * 279.74445 * 3 2 1 27 27 H 1.08999 * 109.47299 * 39.74783 * 3 2 1 28 28 H 1.09000 * 109.47415 * 186.07452 * 4 3 2 29 29 H 1.09002 * 109.47693 * 169.33924 * 7 2 1 30 30 H 1.09002 * 109.47010 * 49.33623 * 7 2 1 31 31 H 0.97003 * 119.99970 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.46764 * 269.71380 * 20 19 10 33 33 H 1.09004 * 109.46881 * 149.72077 * 20 19 10 34 34 H 1.08992 * 109.47607 * 29.71166 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4416 1.3625 0.4993 5 9 3.5023 0.7214 1.7412 6 9 4.2475 0.6795 -0.4179 7 6 1.9954 -0.7660 -1.1375 8 7 1.7434 -2.1933 -0.9237 9 7 2.5985 -3.0960 -0.2769 10 6 2.0127 -4.2816 -0.2830 11 6 2.5338 -5.4590 0.2696 12 1 1.9721 -6.3793 0.2076 13 6 3.7830 -5.4423 0.9024 14 7 4.4630 -4.3276 0.9779 15 14 4.4774 -7.0119 1.6399 16 1 4.6288 -8.0347 0.5741 17 1 5.8027 -6.7292 2.2472 18 1 3.5525 -7.5192 2.6850 19 7 0.7962 -4.1582 -0.9334 20 6 -0.1674 -5.2378 -1.1623 21 6 0.6476 -2.8745 -1.3144 22 16 -0.6976 -2.2222 -2.1487 23 1 -0.3634 -1.0119 0.1793 24 1 -0.3633 0.6613 0.7867 25 1 -0.3633 0.3508 -0.9659 26 1 1.9632 1.7729 -1.0129 27 1 1.3880 1.9938 0.6571 28 1 3.7969 2.3878 0.6020 29 1 3.0685 -0.5956 -1.2249 30 1 1.5005 -0.4429 -2.0534 31 1 5.3282 -4.3160 1.4166 32 1 0.0469 -5.7197 -2.1162 33 1 -1.1765 -4.8260 -1.1818 34 1 -0.0894 -5.9707 -0.3594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794626966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:51 Heat of formation + Delta-G solvation = -30.516903 kcal Electronic energy + Delta-G solvation = -22188.575320 eV Core-core repulsion = 18533.653134 eV Total energy + Delta-G solvation = -3654.922186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.80627 -47.83500 -42.65069 -38.75628 -35.93988 -35.50098 -32.59879 -30.80766 -29.68386 -28.30570 -27.24672 -25.09518 -23.52483 -22.65488 -22.42421 -19.54287 -18.65939 -18.42351 -18.11216 -17.74882 -17.45035 -16.97803 -16.56339 -16.45938 -15.86849 -15.45013 -14.99705 -14.90683 -14.46939 -14.19293 -13.93037 -13.71824 -13.46744 -13.42674 -13.25544 -13.14826 -12.95146 -12.86978 -12.64879 -12.45764 -12.04216 -11.79159 -11.57391 -11.35770 -10.90594 -10.66429 -9.61918 -8.78331 -8.64047 -8.52032 -6.97061 0.50705 0.77838 1.30347 1.43725 1.58678 1.63588 1.86716 2.12288 2.39219 2.70999 3.06142 3.10572 3.43912 3.56261 3.62359 3.95954 4.02939 4.15964 4.36871 4.43022 4.44518 4.50455 4.63506 4.66150 4.71181 4.89153 5.05937 5.09221 5.26134 5.61263 5.71812 5.88903 6.07882 6.48565 6.56798 7.33753 8.25996 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.007216 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.227783 B = 3879.229864 C = 5622.228464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.568 5.568 3 C 0.007 3.993 4 C 0.254 3.746 5 F -0.220 7.220 6 F -0.224 7.224 7 C 0.306 3.694 8 N -0.368 5.368 9 N -0.365 5.365 10 C 0.349 3.651 11 C -0.453 4.453 12 H 0.120 0.880 13 C 0.032 3.968 14 N -0.775 5.775 15 Si 1.007 2.993 16 H -0.251 1.251 17 H -0.274 1.274 18 H -0.253 1.253 19 N -0.517 5.517 20 C 0.095 3.905 21 C 0.452 3.548 22 S -0.732 6.732 23 H 0.035 0.965 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.171 0.829 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.291 0.709 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 6.232 1.712 6.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.294 5.294 3 C -0.122 4.122 4 C 0.201 3.799 5 F -0.201 7.201 6 F -0.205 7.205 7 C 0.096 3.904 8 N -0.154 5.154 9 N -0.197 5.197 10 C 0.100 3.900 11 C -0.495 4.495 12 H 0.138 0.862 13 C -0.191 4.191 14 N -0.400 5.400 15 Si 0.826 3.174 16 H -0.175 1.175 17 H -0.198 1.198 18 H -0.177 1.177 19 N -0.217 5.217 20 C -0.046 4.046 21 C 0.081 3.919 22 S -0.608 6.608 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.157 0.843 28 H 0.188 0.812 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.857 7.107 1.999 7.432 hybrid contribution 0.112 -1.042 -0.273 1.083 sum 0.970 6.065 1.726 6.380 Atomic orbital electron populations 1.22427 0.84798 1.01653 1.01374 1.61724 1.10051 1.14213 1.43383 1.23453 0.94681 0.89099 1.04917 1.22783 0.90733 0.93846 0.72529 1.92970 1.97105 1.85489 1.44573 1.92855 1.76303 1.83547 1.67832 1.22328 1.02246 0.73449 0.92404 1.49470 1.12802 1.09861 1.43245 1.79391 1.13803 0.96746 1.29744 1.21767 0.80841 0.95679 0.91668 1.18892 1.04040 0.92961 1.33561 0.86215 1.26956 0.95832 1.01783 0.94493 1.70004 1.11635 1.29285 1.29062 0.84855 0.77694 0.75801 0.79064 1.17493 1.19815 1.17666 1.46273 1.19172 1.08110 1.48170 1.22043 0.91356 0.87448 1.03795 1.23018 0.91646 0.85392 0.91852 1.92537 1.27926 1.79282 1.61086 0.94649 0.89512 0.93776 0.88785 0.84331 0.81249 0.86613 0.90546 0.89854 0.89971 0.89156 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.56 8.27 127.69 1.06 2.61 16 2 N -0.57 -20.00 4.63 -934.89 -4.33 -24.33 16 3 C 0.01 0.15 5.38 86.30 0.46 0.62 16 4 C 0.25 6.12 5.58 71.98 0.40 6.53 16 5 F -0.22 -7.46 17.15 44.97 0.77 -6.69 16 6 F -0.22 -7.10 14.60 44.97 0.66 -6.44 16 7 C 0.31 12.49 5.80 170.80 0.99 13.48 16 8 N -0.37 -18.14 3.67 -359.70 -1.32 -19.46 16 9 N -0.36 -19.99 10.77 -55.17 -0.59 -20.59 16 10 C 0.35 17.98 7.50 133.52 1.00 18.98 16 11 C -0.45 -21.51 8.98 23.16 0.21 -21.31 16 12 H 0.12 4.90 7.11 -2.91 -0.02 4.88 16 13 C 0.03 1.49 5.50 85.28 0.47 1.96 16 14 N -0.78 -39.63 11.90 21.84 0.26 -39.37 16 15 Si 1.01 33.93 29.56 68.60 2.03 35.96 16 16 H -0.25 -7.97 7.11 99.48 0.71 -7.27 16 17 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 18 H -0.25 -8.09 7.11 99.48 0.71 -7.39 16 19 N -0.52 -24.12 3.17 -548.30 -1.74 -25.86 16 20 C 0.09 3.37 10.65 127.77 1.36 4.73 16 21 C 0.45 22.12 6.84 179.06 1.22 23.35 16 22 S -0.73 -35.32 27.07 -56.49 -1.53 -36.85 16 23 H 0.03 1.52 6.18 -2.39 -0.01 1.51 16 24 H 0.09 2.40 7.82 -2.38 -0.02 2.39 16 25 H 0.04 1.51 7.65 -2.39 -0.02 1.50 16 26 H 0.09 1.70 7.99 -2.38 -0.02 1.68 16 27 H 0.14 2.24 7.72 -2.39 -0.02 2.22 16 28 H 0.17 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.12 4.78 5.20 -2.39 -0.01 4.77 16 30 H 0.08 3.02 7.48 -2.39 -0.02 3.01 16 31 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.63 16 33 H 0.09 3.18 7.61 -2.38 -0.02 3.16 16 34 H 0.11 3.25 7.31 -2.39 -0.02 3.23 16 Total: -1.00 -72.47 304.98 2.52 -69.95 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 1.14 Total: 22.72 kcal Atomic # 6 Polarization: 43.78 SS G_CDS: 7.17 Total: 50.95 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -7.72 Total: -129.60 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 1.43 Total: -13.13 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 2.03 Total: 35.96 kcal Atomic # 16 Polarization: -35.32 SS G_CDS: -1.53 Total: -36.85 kcal Total: -72.47 2.52 -69.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794626966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.433 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds