Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39504 * 120.67296 * 146.81866 * 3 2 1 5 5 N 1.31646 * 120.69841 * 179.97438 * 4 3 2 6 6 C 1.32117 * 122.29059 * 0.02562 * 5 4 3 7 7 C 1.37826 * 121.28305 * 359.71167 * 6 5 4 8 8 C 1.40112 * 119.12056 * 0.53965 * 7 6 5 9 9 C 1.47007 * 121.02018 * 179.74616 * 8 7 6 10 10 C 1.34480 * 120.00034 * 42.42206 * 9 8 7 11 11 C 1.47321 * 120.00186 * 8.88740 * 10 9 8 12 12 C 1.39844 * 120.13388 * 39.92843 * 11 10 9 13 13 C 1.37945 * 119.97294 * 180.30600 * 12 11 10 14 14 C 1.38278 * 120.24144 * 359.72545 * 13 12 11 15 15 C 1.38993 * 120.26262 * 0.02562 * 14 13 12 16 16 O 1.35761 * 119.98824 * 179.97438 * 15 14 13 17 17 C 1.34829 * 116.99674 * 174.73274 * 16 15 14 18 18 H 1.08001 * 120.00635 * 5.06714 * 17 16 15 19 19 C 1.38661 * 119.99704 * 185.06548 * 17 16 15 20 20 N 1.31559 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99997 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47133 * 90.00413 * 21 19 17 23 23 H 1.48500 * 109.47101 * 210.00188 * 21 19 17 24 24 H 1.48499 * 109.47172 * 330.00068 * 21 19 17 25 25 C 1.38595 * 120.02467 * 0.02562 * 15 14 13 26 26 H 1.08000 * 119.65104 * 359.97329 * 4 3 2 27 27 H 1.07999 * 119.36230 * 179.97438 * 6 5 4 28 28 H 1.08003 * 120.44045 * 180.29588 * 7 6 5 29 29 H 1.08003 * 120.00156 * 222.41181 * 9 8 7 30 30 H 1.07998 * 120.00064 * 188.88312 * 10 9 8 31 31 H 1.08007 * 120.01403 * 0.03378 * 12 11 10 32 32 H 1.08005 * 119.88273 * 179.74990 * 13 12 11 33 33 H 1.07998 * 119.86783 * 179.97438 * 14 13 12 34 34 H 0.96992 * 120.00031 * 180.02562 * 20 19 17 35 35 H 1.08000 * 120.11846 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2791 1.0052 -0.6567 5 7 4.5956 1.0065 -0.6566 6 6 5.3023 0.0724 -0.0455 7 6 4.6899 -0.9581 0.6347 8 6 3.2904 -1.0177 0.6661 9 6 2.5940 -2.1014 1.3744 10 6 3.0289 -2.5041 2.5815 11 6 4.0743 -1.7374 3.2813 12 6 4.0599 -0.3394 3.2492 13 6 5.0440 0.3751 3.9003 14 6 6.0433 -0.2859 4.5906 15 6 6.0643 -1.6750 4.6334 16 8 7.0484 -2.3182 5.3123 17 6 6.9507 -3.6596 5.4070 18 1 6.1624 -4.1819 4.8853 19 6 7.8625 -4.3687 6.1742 20 7 8.8225 -3.7325 6.8101 21 14 7.7276 -6.2272 6.3048 22 1 8.5241 -6.8586 5.2222 23 1 8.2469 -6.6697 7.6238 24 1 6.3047 -6.6308 6.1723 25 6 5.0816 -2.4038 3.9822 26 1 2.7441 1.7900 -1.1706 27 1 6.3808 0.1194 -0.0759 28 1 5.2810 -1.7120 1.1335 29 1 1.7329 -2.5741 0.9254 30 1 2.6118 -3.3896 3.0380 31 1 3.2811 0.1806 2.7111 32 1 5.0337 1.4547 3.8711 33 1 6.8111 0.2795 5.0979 34 1 9.4605 -4.2285 7.3465 35 1 5.0967 -3.4832 4.0141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794713822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = 83.866294 kcal Electronic energy + Delta-G solvation = -21470.141201 eV Core-core repulsion = 18206.671870 eV Total energy + Delta-G solvation = -3263.469331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56050 -39.10368 -37.01259 -36.72414 -34.82257 -32.38727 -31.91606 -31.36308 -29.36793 -28.64117 -25.45340 -24.66025 -24.31525 -22.06968 -21.59611 -19.72510 -18.85162 -17.97878 -17.29163 -16.74061 -15.95435 -15.30169 -15.15962 -14.58131 -14.57195 -14.35686 -14.04138 -13.75926 -13.51616 -13.39452 -13.20008 -13.11002 -13.01377 -12.55567 -12.11567 -11.92547 -11.75192 -11.48777 -11.05997 -10.95053 -10.81070 -10.51701 -10.41837 -9.72055 -9.51098 -9.29157 -9.18168 -8.85349 -7.95923 -7.31247 -6.53985 -4.14027 0.33590 0.83499 1.57926 2.19101 2.48126 2.60244 2.86279 3.06464 3.07829 3.12300 3.66661 3.79272 3.88376 4.29622 4.36893 4.43203 4.68252 4.87176 4.97744 5.01734 5.16497 5.23137 5.39673 5.55459 5.64260 5.72377 5.75095 5.89698 5.97266 6.12071 6.29568 6.36838 6.43907 6.59508 6.70230 6.94017 7.10320 7.16941 7.28501 7.28836 7.62699 7.76305 7.89370 8.91318 9.59411 10.63659 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.003873 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.929553 B = 7227.154615 C = 7640.947948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.266 3.734 3 C -0.096 4.096 4 C 0.150 3.850 5 N -0.488 5.488 6 C 0.126 3.874 7 C -0.142 4.142 8 C 0.061 3.939 9 C -0.166 4.166 10 C -0.041 4.041 11 C -0.041 4.041 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.180 4.180 15 C 0.151 3.849 16 O -0.175 6.175 17 C -0.395 4.395 18 H 0.092 0.908 19 C 0.041 3.959 20 N -0.860 5.860 21 Si 0.940 3.060 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.213 4.213 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.271 0.729 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 4.085 -11.280 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.049 4.049 3 C -0.102 4.102 4 C -0.012 4.012 5 N -0.197 5.197 6 C -0.028 4.028 7 C -0.161 4.161 8 C 0.051 3.949 9 C -0.184 4.184 10 C -0.060 4.060 11 C -0.042 4.042 12 C -0.206 4.206 13 C -0.096 4.096 14 C -0.199 4.199 15 C 0.097 3.903 16 O -0.079 6.079 17 C -0.471 4.471 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.494 5.494 21 Si 0.764 3.236 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.232 4.232 26 H 0.179 0.821 27 H 0.180 0.820 28 H 0.167 0.833 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.506 4.765 -11.434 15.026 hybrid contribution -0.143 -1.693 0.640 1.816 sum -8.649 3.072 -10.793 14.168 Atomic orbital electron populations 1.81239 1.11838 1.07727 1.08692 1.25338 0.92260 0.93772 0.93567 1.17170 0.85426 1.00311 1.07278 1.22769 0.89914 0.94936 0.93534 1.67716 1.07155 1.25739 1.19044 1.22867 1.00822 0.88638 0.90522 1.22436 0.93450 1.00917 0.99327 1.19344 0.93134 0.91487 0.90905 1.21793 1.01276 0.98525 0.96760 1.22406 0.93298 0.96561 0.93699 1.18673 0.94685 0.92917 0.97893 1.20743 1.01360 0.92488 1.06028 1.20539 0.93979 0.98554 0.96501 1.20347 1.01800 0.91756 1.06023 1.19245 0.88076 0.91789 0.91175 1.84005 1.39045 1.21905 1.62930 1.21296 1.15685 0.78696 1.31418 0.89072 1.25284 0.95194 1.00509 0.95364 1.70028 1.14493 1.36416 1.28504 0.85731 0.78977 0.80605 0.78259 1.19803 1.20202 1.19183 1.21279 0.97646 1.00462 1.03802 0.82133 0.81958 0.83335 0.85238 0.85162 0.87794 0.86940 0.86418 0.91906 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.73 18.54 41.83 0.78 -4.95 16 2 C 0.27 3.16 14.53 -22.48 -0.33 2.83 16 3 C -0.10 -1.04 5.74 -106.25 -0.61 -1.65 16 4 C 0.15 1.50 10.92 -17.16 -0.19 1.31 16 5 N -0.49 -5.48 10.33 -13.01 -0.13 -5.61 16 6 C 0.13 1.37 11.15 -17.58 -0.20 1.17 16 7 C -0.14 -1.66 7.15 -39.03 -0.28 -1.93 16 8 C 0.06 0.71 3.62 -104.39 -0.38 0.33 16 9 C -0.17 -1.92 8.93 -37.36 -0.33 -2.25 16 10 C -0.04 -0.53 9.73 -37.22 -0.36 -0.90 16 11 C -0.04 -0.66 3.85 -105.08 -0.40 -1.06 16 12 C -0.19 -2.90 7.05 -39.09 -0.28 -3.17 16 13 C -0.08 -1.25 10.02 -39.67 -0.40 -1.65 16 14 C -0.18 -3.45 9.98 -39.29 -0.39 -3.84 16 15 C 0.15 3.31 6.64 -39.17 -0.26 3.05 16 16 O -0.18 -4.68 9.76 0.02 0.00 -4.68 16 17 C -0.39 -10.35 9.48 30.89 0.29 -10.06 16 18 H 0.09 2.18 5.20 -52.49 -0.27 1.91 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -24.21 13.67 55.48 0.76 -23.45 16 21 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 C -0.21 -4.07 8.91 -38.93 -0.35 -4.42 16 26 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.15 1.87 7.00 -52.48 -0.37 1.50 16 29 H 0.13 1.32 8.01 -52.48 -0.42 0.90 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.10 1.51 6.64 -52.48 -0.35 1.16 16 32 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.13 2.51 5.63 -52.49 -0.30 2.22 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -29.52 317.43 -6.35 -35.87 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -2.95 Total: 4.79 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -4.55 Total: -21.25 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 1.40 Total: -34.01 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.00 Total: -4.68 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.52 -6.35 -35.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794713822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.732 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds