Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39504 * 120.67296 * 146.81866 * 3 2 1 5 5 N 1.31646 * 120.69841 * 179.97438 * 4 3 2 6 6 C 1.32117 * 122.29059 * 0.02562 * 5 4 3 7 7 C 1.37826 * 121.28305 * 359.71167 * 6 5 4 8 8 C 1.40112 * 119.12056 * 0.53965 * 7 6 5 9 9 C 1.47007 * 121.02018 * 179.74616 * 8 7 6 10 10 C 1.34480 * 120.00034 * 42.42206 * 9 8 7 11 11 C 1.47321 * 120.00186 * 8.88740 * 10 9 8 12 12 C 1.39844 * 120.13388 * 39.92843 * 11 10 9 13 13 C 1.37945 * 119.97294 * 180.30600 * 12 11 10 14 14 C 1.38278 * 120.24144 * 359.72545 * 13 12 11 15 15 C 1.38993 * 120.26262 * 0.02562 * 14 13 12 16 16 O 1.35761 * 119.98824 * 179.97438 * 15 14 13 17 17 C 1.34829 * 116.99674 * 174.73274 * 16 15 14 18 18 H 1.08001 * 120.00635 * 5.06714 * 17 16 15 19 19 C 1.38661 * 119.99704 * 185.06548 * 17 16 15 20 20 N 1.31559 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99997 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47133 * 90.00413 * 21 19 17 23 23 H 1.48500 * 109.47101 * 210.00188 * 21 19 17 24 24 H 1.48499 * 109.47172 * 330.00068 * 21 19 17 25 25 C 1.38595 * 120.02467 * 0.02562 * 15 14 13 26 26 H 1.08000 * 119.65104 * 359.97329 * 4 3 2 27 27 H 1.07999 * 119.36230 * 179.97438 * 6 5 4 28 28 H 1.08003 * 120.44045 * 180.29588 * 7 6 5 29 29 H 1.08003 * 120.00156 * 222.41181 * 9 8 7 30 30 H 1.07998 * 120.00064 * 188.88312 * 10 9 8 31 31 H 1.08007 * 120.01403 * 0.03378 * 12 11 10 32 32 H 1.08005 * 119.88273 * 179.74990 * 13 12 11 33 33 H 1.07998 * 119.86783 * 179.97438 * 14 13 12 34 34 H 0.96992 * 120.00031 * 180.02562 * 20 19 17 35 35 H 1.08000 * 120.11846 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2791 1.0052 -0.6567 5 7 4.5956 1.0065 -0.6566 6 6 5.3023 0.0724 -0.0455 7 6 4.6899 -0.9581 0.6347 8 6 3.2904 -1.0177 0.6661 9 6 2.5940 -2.1014 1.3744 10 6 3.0289 -2.5041 2.5815 11 6 4.0743 -1.7374 3.2813 12 6 4.0599 -0.3394 3.2492 13 6 5.0440 0.3751 3.9003 14 6 6.0433 -0.2859 4.5906 15 6 6.0643 -1.6750 4.6334 16 8 7.0484 -2.3182 5.3123 17 6 6.9507 -3.6596 5.4070 18 1 6.1624 -4.1819 4.8853 19 6 7.8625 -4.3687 6.1742 20 7 8.8225 -3.7325 6.8101 21 14 7.7276 -6.2272 6.3048 22 1 8.5241 -6.8586 5.2222 23 1 8.2469 -6.6697 7.6238 24 1 6.3047 -6.6308 6.1723 25 6 5.0816 -2.4038 3.9822 26 1 2.7441 1.7900 -1.1706 27 1 6.3808 0.1194 -0.0759 28 1 5.2810 -1.7120 1.1335 29 1 1.7329 -2.5741 0.9254 30 1 2.6118 -3.3896 3.0380 31 1 3.2811 0.1806 2.7111 32 1 5.0337 1.4547 3.8711 33 1 6.8111 0.2795 5.0979 34 1 9.4605 -4.2285 7.3465 35 1 5.0967 -3.4832 4.0141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794713822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = 67.892941 kcal Electronic energy + Delta-G solvation = -21470.833857 eV Core-core repulsion = 18206.671870 eV Total energy + Delta-G solvation = -3264.161988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53689 -40.60482 -38.49776 -37.70311 -35.99918 -34.22265 -32.96779 -32.34482 -30.72788 -30.03465 -27.29952 -25.62069 -25.28705 -23.37860 -23.04781 -20.86827 -19.89695 -19.66358 -18.62136 -17.73087 -17.10195 -16.78638 -16.42781 -16.09250 -15.69444 -15.51861 -15.33959 -15.22189 -14.77514 -14.52654 -14.31595 -14.12121 -14.05671 -13.98740 -13.55201 -13.17299 -13.01239 -12.86102 -12.58453 -12.36047 -12.26077 -12.10479 -11.45537 -11.21054 -10.82605 -10.59249 -10.23806 -10.14204 -9.32087 -8.80237 -8.44288 -6.12357 -0.61130 -0.09613 0.38488 0.73704 1.37767 1.41188 1.48908 1.54272 1.55114 1.94597 2.19312 2.74114 2.85301 2.91572 3.19465 3.44866 3.52031 3.53096 3.77377 3.83395 4.07268 4.14733 4.30041 4.34529 4.50262 4.57035 4.66293 4.78892 4.82091 4.96752 5.08242 5.13711 5.18716 5.29625 5.44945 5.56913 5.65807 5.70981 5.78537 6.04700 6.17359 6.36753 6.91028 7.01023 7.81781 8.78737 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.003873 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.929553 B = 7227.154615 C = 7640.947948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.286 3.714 3 C -0.092 4.092 4 C 0.161 3.839 5 N -0.498 5.498 6 C 0.129 3.871 7 C -0.152 4.152 8 C 0.050 3.950 9 C -0.138 4.138 10 C -0.065 4.065 11 C -0.026 4.026 12 C -0.168 4.168 13 C -0.066 4.066 14 C -0.194 4.194 15 C 0.118 3.882 16 O -0.231 6.231 17 C -0.410 4.410 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.921 5.921 21 Si 1.014 2.986 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.252 1.252 25 C -0.220 4.220 26 H 0.190 0.810 27 H 0.177 0.823 28 H 0.136 0.864 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.271 0.729 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 4.603 -13.542 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.029 4.029 3 C -0.098 4.098 4 C -0.001 4.001 5 N -0.206 5.206 6 C -0.025 4.025 7 C -0.172 4.172 8 C 0.040 3.960 9 C -0.156 4.156 10 C -0.083 4.083 11 C -0.026 4.026 12 C -0.186 4.186 13 C -0.084 4.084 14 C -0.213 4.213 15 C 0.067 3.933 16 O -0.138 6.138 17 C -0.486 4.486 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.559 5.559 21 Si 0.833 3.167 22 H -0.188 1.188 23 H -0.200 1.200 24 H -0.176 1.176 25 C -0.239 4.239 26 H 0.207 0.793 27 H 0.194 0.806 28 H 0.154 0.846 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.026 5.315 -13.735 18.398 hybrid contribution 0.399 -1.565 1.044 1.923 sum -10.627 3.750 -12.691 16.972 Atomic orbital electron populations 1.81284 1.12735 1.08721 1.09757 1.25316 0.92111 0.92869 0.92652 1.17111 0.84814 1.00462 1.07373 1.23240 0.89556 0.94925 0.92358 1.67824 1.07738 1.25804 1.19245 1.23118 1.01665 0.88061 0.89613 1.22364 0.93492 1.01174 1.00162 1.19427 0.93157 0.91957 0.91470 1.22033 1.00571 0.97261 0.95712 1.22392 0.93540 0.97723 0.94676 1.18892 0.93933 0.93427 0.96321 1.21062 1.00892 0.92368 1.04290 1.20865 0.92572 1.00170 0.94827 1.20523 1.02913 0.90901 1.06998 1.19758 0.88606 0.92990 0.91913 1.83969 1.41807 1.22221 1.65810 1.21789 1.16075 0.79254 1.31515 0.87874 1.26512 0.94683 1.05786 0.94897 1.70177 1.16300 1.38549 1.30853 0.84648 0.79720 0.73983 0.78313 1.18813 1.20013 1.17554 1.21297 0.97988 1.00173 1.04442 0.79294 0.80599 0.84616 0.83216 0.83466 0.85560 0.83687 0.86990 0.91951 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.91 18.54 19.00 0.35 -10.56 16 2 C 0.29 5.73 14.53 88.33 1.28 7.02 16 3 C -0.09 -1.64 5.74 -20.92 -0.12 -1.76 16 4 C 0.16 2.55 10.92 85.03 0.93 3.48 16 5 N -0.50 -9.42 10.33 -195.09 -2.01 -11.43 16 6 C 0.13 2.46 11.15 84.55 0.94 3.41 16 7 C -0.15 -3.18 7.15 22.63 0.16 -3.01 16 8 C 0.05 0.99 3.62 -19.72 -0.07 0.92 16 9 C -0.14 -2.71 8.93 23.71 0.21 -2.50 16 10 C -0.07 -1.51 9.73 23.80 0.23 -1.27 16 11 C -0.03 -0.77 3.85 -20.16 -0.08 -0.85 16 12 C -0.17 -4.70 7.05 22.59 0.16 -4.55 16 13 C -0.07 -2.00 10.02 22.21 0.22 -1.78 16 14 C -0.19 -7.54 9.98 22.46 0.22 -7.32 16 15 C 0.12 5.36 6.64 22.54 0.15 5.51 16 16 O -0.23 -13.15 9.76 -22.85 -0.22 -13.37 16 17 C -0.41 -22.61 9.48 67.92 0.64 -21.97 16 18 H 0.10 5.14 5.20 -2.91 -0.02 5.12 16 19 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 20 N -0.92 -54.88 13.67 21.62 0.30 -54.59 16 21 Si 1.01 41.11 29.55 68.60 2.03 43.14 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 25 C -0.22 -8.51 8.91 22.69 0.20 -8.31 16 26 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 27 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 28 H 0.14 3.25 7.00 -2.91 -0.02 3.23 16 29 H 0.15 2.42 8.01 -2.91 -0.02 2.39 16 30 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.13 3.09 6.64 -2.91 -0.02 3.07 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.12 4.86 5.63 -2.91 -0.02 4.84 16 Total: -1.00 -67.86 317.43 7.13 -60.72 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.14 Total: 19.76 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 5.56 Total: -33.67 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -1.37 Total: -76.57 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.22 Total: -13.37 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -67.86 7.13 -60.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794713822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.613 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds