Wall clock time and date at job start Tue Mar 31 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39646 * 120.48659 * 78.34344 * 3 2 1 5 5 N 1.31758 * 120.88478 * 180.02562 * 4 3 2 6 6 C 1.31726 * 122.04241 * 359.65572 * 5 4 3 7 7 C 1.39631 * 120.87271 * 0.63761 * 6 5 4 8 8 C 1.47812 * 120.49305 * 179.67651 * 7 6 5 9 9 O 1.21564 * 119.99933 * 179.71953 * 8 7 6 10 10 N 1.34776 * 119.99979 * 359.72375 * 8 7 6 11 11 C 1.39127 * 119.99944 * 185.21174 * 10 8 7 12 12 C 1.39509 * 119.83820 * 33.28167 * 11 10 8 13 13 C 1.36365 * 120.16877 * 180.27848 * 12 11 10 14 14 C 1.40878 * 119.82556 * 359.49918 * 13 12 11 15 15 C 1.41144 * 120.15648 * 180.25033 * 14 13 12 16 16 H 1.08001 * 119.99776 * 205.15027 * 15 14 13 17 17 C 1.39910 * 119.99883 * 25.15798 * 15 14 13 18 18 N 1.30873 * 120.00186 * 17.49564 * 17 15 14 19 19 Si 1.86796 * 119.99755 * 197.49254 * 17 15 14 20 20 H 1.48506 * 109.47009 * 94.68027 * 19 17 15 21 21 H 1.48500 * 109.47191 * 214.68436 * 19 17 15 22 22 H 1.48499 * 109.47302 * 334.68197 * 19 17 15 23 23 C 1.40878 * 119.67994 * 0.49834 * 14 13 12 24 24 C 1.36358 * 119.82728 * 359.75444 * 23 14 13 25 25 C 1.39668 * 120.48671 * 258.36554 * 3 2 1 26 26 H 4.52738 * 13.93008 * 0.02562 * 4 2 1 27 27 H 1.07994 * 119.55653 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.56813 * 180.31595 * 6 5 4 29 29 H 0.96996 * 120.00195 * 5.20767 * 10 8 7 30 30 H 1.08001 * 119.91458 * 359.97438 * 12 11 10 31 31 H 1.08000 * 120.08404 * 179.72055 * 13 12 11 32 32 H 0.96998 * 119.99973 * 180.02562 * 18 17 15 33 33 H 1.07999 * 120.08387 * 179.73141 * 23 14 13 34 34 H 1.08008 * 119.91130 * 179.97438 * 24 23 14 35 35 H 1.07998 * 120.92209 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3146 -0.2422 -1.1786 5 7 4.6322 -0.2439 -1.1874 6 6 5.3387 -0.0130 -0.0999 7 6 4.7115 0.2330 1.1231 8 6 5.5126 0.4842 2.3397 9 8 4.9573 0.7024 3.3988 10 7 6.8587 0.4713 2.2747 11 6 7.6126 0.5995 3.4370 12 6 7.1356 0.0686 4.6357 13 6 7.8663 0.1953 5.7801 14 6 9.1105 0.8552 5.7475 15 6 9.8750 0.9858 6.9268 16 1 10.5849 1.7939 7.0234 17 6 9.7132 0.0682 7.9705 18 7 9.1320 -1.0827 7.7458 19 14 10.3267 0.4857 9.6847 20 1 9.2139 1.0610 10.4823 21 1 10.8243 -0.7471 10.3463 22 1 11.4297 1.4754 9.5883 23 6 9.5856 1.3888 4.5333 24 6 8.8414 1.2588 3.3981 25 6 3.3145 0.2437 1.1789 26 1 -1.0500 0.0004 -0.0003 27 1 2.7754 -0.4311 -2.0950 28 1 6.4173 -0.0190 -0.1539 29 1 7.3020 0.3726 1.4176 30 1 6.1831 -0.4398 4.6584 31 1 7.4937 -0.2123 6.7082 32 1 9.0195 -1.7187 8.4695 33 1 10.5365 1.8998 4.5018 34 1 9.2041 1.6677 2.4666 35 1 2.7976 0.4351 2.1076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798158098.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:51 Heat of formation + Delta-G solvation = 60.125472 kcal Electronic energy + Delta-G solvation = -20786.782501 eV Core-core repulsion = 17522.283690 eV Total energy + Delta-G solvation = -3264.498810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.90953 -40.62299 -38.99475 -36.33830 -35.44107 -34.80573 -33.48861 -31.81012 -31.41375 -30.68001 -27.23568 -25.68423 -25.02015 -23.36810 -22.89449 -21.70551 -20.12797 -19.26191 -18.70948 -18.24089 -17.90730 -17.13350 -16.92609 -16.31425 -16.11066 -15.77386 -15.27219 -15.15322 -14.76077 -14.46848 -14.32962 -13.97030 -13.68565 -13.62119 -13.28839 -12.93182 -12.80905 -12.70742 -12.41891 -11.84741 -11.77533 -11.56431 -11.35163 -11.06928 -10.95250 -10.79659 -10.53711 -9.92678 -9.47395 -8.89296 -8.62176 -6.28535 -0.64545 -0.24816 0.81916 1.13700 1.38056 1.44487 1.52360 1.64566 1.68554 2.14251 2.15459 2.20390 2.72589 2.86798 3.07390 3.25930 3.63002 3.64253 3.71184 3.75077 4.06459 4.31222 4.42714 4.45681 4.77764 4.81887 4.94357 4.99924 5.09219 5.15509 5.27375 5.36710 5.39721 5.65893 5.83155 6.03544 6.08766 6.31342 6.47231 6.58706 6.65202 6.66706 6.91070 6.97503 7.24737 8.31415 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032553 B = 0.002921 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.928256 B = 9583.755405 C =10190.887356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.208 4.208 3 C -0.045 4.045 4 C 0.150 3.850 5 N -0.489 5.489 6 C 0.148 3.852 7 C -0.184 4.184 8 C 0.547 3.453 9 O -0.569 6.569 10 N -0.629 5.629 11 C 0.002 3.998 12 C -0.098 4.098 13 C -0.181 4.181 14 C 0.075 3.925 15 C -0.491 4.491 16 H 0.082 0.918 17 C 0.031 3.969 18 N -0.824 5.824 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.254 1.254 23 C -0.224 4.224 24 C -0.094 4.094 25 C -0.010 4.010 26 H 0.266 0.734 27 H 0.196 0.804 28 H 0.190 0.810 29 H 0.418 0.582 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.288 0.712 33 H 0.113 0.887 34 H 0.138 0.862 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 0.514 -15.832 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.209 4.209 3 C -0.047 4.047 4 C -0.007 4.007 5 N -0.196 5.196 6 C -0.010 4.010 7 C -0.189 4.189 8 C 0.335 3.665 9 O -0.449 6.449 10 N -0.274 5.274 11 C -0.091 4.091 12 C -0.118 4.118 13 C -0.201 4.201 14 C 0.072 3.928 15 C -0.520 4.520 16 H 0.100 0.900 17 C -0.184 4.184 18 N -0.450 5.450 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.177 1.177 23 C -0.244 4.244 24 C -0.114 4.114 25 C -0.036 4.036 26 H 0.282 0.718 27 H 0.213 0.787 28 H 0.207 0.793 29 H 0.256 0.744 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.833 0.251 -15.800 19.159 hybrid contribution -0.179 0.023 1.643 1.653 sum -11.013 0.275 -14.157 17.938 Atomic orbital electron populations 1.25886 0.96434 0.95637 0.95546 1.19822 0.91884 1.04432 1.04783 1.16933 0.89102 1.04250 0.94405 1.23643 0.89450 0.90046 0.97577 1.67837 1.08158 1.14002 1.29587 1.23444 1.01776 0.89947 0.85818 1.20737 0.94567 1.08667 0.94948 1.18452 0.82469 0.77250 0.88292 1.90778 1.71857 1.50121 1.32134 1.42679 1.04894 1.70510 1.09315 1.17170 0.95639 1.09569 0.86751 1.20458 0.98520 0.99627 0.93220 1.20860 0.95679 1.06523 0.97042 1.18026 0.91108 0.90326 0.93340 1.19848 1.20801 1.11505 0.99889 0.90004 1.26834 0.93520 0.93212 1.04826 1.69911 1.33672 1.05950 1.35465 0.85165 0.79350 0.79088 0.75956 1.19145 1.19213 1.17697 1.20833 1.01108 1.10030 0.92382 1.20405 0.93849 0.98375 0.98723 1.21853 0.92547 0.90593 0.98657 0.71837 0.78702 0.79329 0.74353 0.89037 0.88568 0.90167 0.86939 0.84394 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 19.25 74.32 1.43 -0.09 16 2 C -0.21 -3.93 13.27 30.02 0.40 -3.53 16 3 C -0.04 -0.96 5.73 -21.35 -0.12 -1.08 16 4 C 0.15 2.72 10.91 85.04 0.93 3.65 16 5 N -0.49 -9.97 10.33 -193.73 -2.00 -11.97 16 6 C 0.15 3.09 10.70 85.05 0.91 4.00 16 7 C -0.18 -4.94 5.89 -20.03 -0.12 -5.05 16 8 C 0.55 19.28 7.50 86.78 0.65 19.93 16 9 O -0.57 -25.50 14.06 -3.92 -0.06 -25.56 16 10 N -0.63 -20.92 5.25 -305.73 -1.61 -22.53 16 11 C 0.00 0.09 6.29 38.60 0.24 0.33 16 12 C -0.10 -5.03 8.57 22.14 0.19 -4.84 16 13 C -0.18 -10.12 8.63 22.48 0.19 -9.92 16 14 C 0.07 4.08 5.57 -21.27 -0.12 3.96 16 15 C -0.49 -26.59 9.03 23.39 0.21 -26.38 16 16 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 17 C 0.03 1.59 5.14 85.24 0.44 2.03 16 18 N -0.82 -44.24 10.97 21.82 0.24 -44.00 16 19 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 22 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 23 C -0.22 -10.61 9.74 22.48 0.22 -10.39 16 24 C -0.09 -3.86 9.89 22.14 0.22 -3.64 16 25 C -0.01 -0.27 9.44 23.00 0.22 -0.05 16 26 H 0.27 0.83 7.80 -4.42 -0.03 0.79 16 27 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.19 2.77 6.42 -2.91 -0.02 2.75 16 29 H 0.42 9.78 6.88 -92.71 -0.64 9.14 16 30 H 0.09 4.78 6.38 -2.91 -0.02 4.77 16 31 H 0.10 5.70 6.19 -2.91 -0.02 5.69 16 32 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 33 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.14 3.89 7.73 -2.91 -0.02 3.87 16 Total: -1.00 -71.37 318.85 5.01 -66.36 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.51 Total: 28.02 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 5.89 Total: -31.07 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.37 Total: -78.50 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -71.37 5.01 -66.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798158098.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.486 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds