Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00194 * 2 1 4 4 H 1.48501 * 109.47046 * 270.00274 * 3 2 1 5 5 H 1.48500 * 109.47019 * 29.99851 * 3 2 1 6 6 H 1.48494 * 109.47282 * 149.99948 * 3 2 1 7 7 C 1.38796 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00186 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00360 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99805 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64875 * 0.04764 * 13 11 10 15 15 C 1.54320 * 107.27138 * 178.90378 * 14 13 11 16 16 C 1.55153 * 102.94175 * 337.80587 * 15 14 13 17 17 H 1.09004 * 111.04254 * 277.41164 * 16 15 14 18 18 C 1.50707 * 111.00646 * 153.57548 * 16 15 14 19 19 C 1.38223 * 119.61967 * 281.35436 * 18 16 15 20 20 C 1.38625 * 119.15978 * 180.27814 * 19 18 16 21 21 C 1.38677 * 118.42126 * 359.46985 * 20 19 18 22 22 C 1.38182 * 119.16110 * 0.48634 * 21 20 19 23 23 N 1.31856 * 119.61465 * 101.32507 * 18 16 15 24 24 C 1.47425 * 125.64793 * 180.02562 * 13 11 10 25 25 H 0.96998 * 120.00000 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47249 * 59.99555 * 10 9 7 27 27 H 1.09006 * 109.47123 * 300.00058 * 10 9 7 28 28 H 1.09002 * 109.87857 * 298.32071 * 14 13 11 29 29 H 1.08998 * 109.88477 * 59.48194 * 14 13 11 30 30 H 1.09002 * 110.72369 * 219.44247 * 15 14 13 31 31 H 1.09004 * 110.72587 * 96.16981 * 15 14 13 32 32 H 1.08002 * 120.41617 * 359.97438 * 19 18 16 33 33 H 1.08003 * 120.79223 * 179.72202 * 20 19 18 34 34 H 1.08007 * 120.41718 * 180.26474 * 21 20 19 35 35 H 1.07998 * 119.61686 * 179.76233 * 22 21 20 36 36 H 1.08994 * 110.37150 * 85.32742 * 24 13 11 37 37 H 1.08999 * 110.36636 * 323.00056 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 4.3110 -6.2451 0.0007 15 6 4.8664 -7.6847 0.0284 16 6 3.6845 -8.5019 0.6136 17 1 3.6693 -8.4437 1.7019 18 6 3.7388 -9.9359 0.1530 19 6 3.3037 -10.2622 -1.1177 20 6 3.3525 -11.5850 -1.5294 21 6 3.8497 -12.5328 -0.6476 22 6 4.2675 -12.1316 0.6069 23 7 4.2013 -10.8645 0.9668 24 6 2.4655 -7.7680 0.0008 25 1 -0.4850 0.8400 0.0004 26 1 3.1245 -3.7314 0.8905 27 1 3.1244 -3.7314 -0.8895 28 1 4.6484 -5.7349 -0.9015 29 1 4.6463 -5.7014 0.8839 30 1 5.7390 -7.7490 0.6784 31 1 5.1087 -8.0241 -0.9788 32 1 2.9259 -9.4970 -1.7797 33 1 3.0151 -11.8701 -2.5150 34 1 3.9062 -13.5720 -0.9365 35 1 4.6523 -12.8642 1.3009 36 1 2.2872 -8.1132 -1.0176 37 1 1.5795 -7.9251 0.6160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798718102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = 3.166501 kcal Electronic energy + Delta-G solvation = -19876.009908 eV Core-core repulsion = 16744.485123 eV Total energy + Delta-G solvation = -3131.524785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82891 -39.50519 -37.22959 -33.26989 -32.71910 -32.42296 -30.56801 -29.64212 -28.05902 -25.50463 -24.45220 -23.61723 -22.84963 -20.78950 -19.34115 -17.76080 -17.44214 -16.84662 -16.51603 -15.90716 -15.54993 -14.95840 -14.79669 -14.41948 -14.24986 -13.98965 -13.74231 -13.53611 -13.32224 -12.78663 -12.57604 -12.48136 -12.26830 -11.84857 -11.61285 -11.49593 -11.06251 -11.02007 -11.01176 -10.75840 -10.20018 -9.81509 -9.75062 -9.43590 -9.26172 -9.06042 -8.51226 -8.22869 -6.49766 -6.21031 -3.91732 0.74835 0.94882 2.87429 3.05434 3.22817 3.26042 3.30784 3.41565 3.59478 3.89609 4.20640 4.24896 4.39281 4.52025 4.56520 4.74425 4.77825 4.82764 5.06485 5.09641 5.14110 5.14711 5.26626 5.43530 5.51362 5.54812 5.63575 5.70628 5.71202 5.79312 5.86155 5.94876 6.00603 6.14898 6.33893 6.39876 7.60037 7.65047 7.67313 8.35876 8.54667 9.24186 10.86437 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047572 B = 0.002712 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.442618 B =10323.573787 C =10624.767924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.515 6.515 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.117 4.117 16 C -0.055 4.055 17 H 0.106 0.894 18 C 0.146 3.854 19 C -0.170 4.170 20 C -0.072 4.072 21 C -0.180 4.180 22 C 0.101 3.899 23 N -0.481 5.481 24 C 0.113 3.887 25 H 0.268 0.732 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.071 0.929 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -23.300 -1.995 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.389 6.389 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.156 4.156 16 C -0.075 4.075 17 H 0.124 0.876 18 C 0.008 3.992 19 C -0.189 4.189 20 C -0.098 4.098 21 C -0.200 4.200 22 C -0.056 4.056 23 N -0.190 5.190 24 C -0.010 4.010 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.173 0.827 36 H 0.089 0.911 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.273 -23.160 -1.157 25.362 hybrid contribution 1.760 0.883 -0.902 2.165 sum 12.033 -22.277 -2.058 25.403 Atomic orbital electron populations 1.70020 1.05952 1.27451 1.46869 1.24996 0.95035 0.99034 0.94552 0.86161 0.79411 0.81551 0.78337 1.20276 1.20753 1.19687 1.22855 0.94891 0.91581 1.58927 0.90919 1.85406 1.04987 0.96370 1.96718 1.23506 1.06453 0.94853 1.04872 1.20040 0.85651 0.85439 0.75099 1.90713 1.14917 1.85113 1.48128 1.48473 1.06589 1.05441 1.75882 1.22024 0.80449 0.97135 1.02518 1.22685 0.97469 0.93397 1.02015 1.21237 0.95898 0.88320 1.02065 0.87613 1.20856 0.93617 0.94549 0.90168 1.22090 1.01712 0.97533 0.97584 1.21623 0.95534 0.92830 0.99779 1.22160 1.01300 1.00916 0.95591 1.22755 0.95622 0.92513 0.94690 1.67466 1.14155 1.01537 1.35844 1.22264 0.97047 0.80723 1.00963 0.92184 0.89212 0.89245 0.90930 0.90902 0.89427 0.90398 0.84249 0.84703 0.84813 0.82703 0.91141 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.02 5.35 36.00 0.19 -2.83 16 11 C 0.55 10.70 7.87 -10.99 -0.09 10.61 16 12 O -0.51 -12.05 16.12 5.56 0.09 -11.97 16 13 N -0.63 -9.08 3.33 -170.52 -0.57 -9.65 16 14 C 0.10 1.09 6.49 -3.07 -0.02 1.07 16 15 C -0.12 -1.00 6.41 -24.90 -0.16 -1.16 16 16 C -0.06 -0.55 3.42 -89.61 -0.31 -0.86 16 17 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 18 C 0.15 1.45 5.89 -82.58 -0.49 0.97 16 19 C -0.17 -1.45 9.14 -39.44 -0.36 -1.81 16 20 C -0.07 -0.51 10.18 -39.28 -0.40 -0.91 16 21 C -0.18 -1.20 10.11 -39.44 -0.40 -1.60 16 22 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 23 N -0.48 -5.05 10.27 -9.47 -0.10 -5.15 16 24 C 0.11 1.39 6.19 -2.52 -0.02 1.37 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 27 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.60 8.00 -51.93 -0.42 0.19 16 32 H 0.14 1.07 6.10 -52.49 -0.32 0.75 16 33 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 35 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.07 0.78 5.71 -51.93 -0.30 0.49 16 37 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -35.36 328.58 -8.96 -44.32 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.80 Total: -1.99 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.04 Total: -7.50 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.07 Total: -40.33 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.36 -8.96 -44.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798718102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.485 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds