Wall clock time and date at job start Tue Mar 31 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 120.00194 * 2 1 4 4 H 1.48501 * 109.47046 * 270.00274 * 3 2 1 5 5 H 1.48500 * 109.47019 * 29.99851 * 3 2 1 6 6 H 1.48494 * 109.47282 * 149.99948 * 3 2 1 7 7 C 1.38796 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00186 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00360 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99805 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64875 * 0.04764 * 13 11 10 15 15 C 1.54320 * 107.27138 * 178.90378 * 14 13 11 16 16 C 1.55153 * 102.94175 * 337.80587 * 15 14 13 17 17 H 1.09004 * 111.04254 * 277.41164 * 16 15 14 18 18 C 1.50707 * 111.00646 * 153.57548 * 16 15 14 19 19 C 1.38223 * 119.61967 * 281.35436 * 18 16 15 20 20 C 1.38625 * 119.15978 * 180.27814 * 19 18 16 21 21 C 1.38677 * 118.42126 * 359.46985 * 20 19 18 22 22 C 1.38182 * 119.16110 * 0.48634 * 21 20 19 23 23 N 1.31856 * 119.61465 * 101.32507 * 18 16 15 24 24 C 1.47425 * 125.64793 * 180.02562 * 13 11 10 25 25 H 0.96998 * 120.00000 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47249 * 59.99555 * 10 9 7 27 27 H 1.09006 * 109.47123 * 300.00058 * 10 9 7 28 28 H 1.09002 * 109.87857 * 298.32071 * 14 13 11 29 29 H 1.08998 * 109.88477 * 59.48194 * 14 13 11 30 30 H 1.09002 * 110.72369 * 219.44247 * 15 14 13 31 31 H 1.09004 * 110.72587 * 96.16981 * 15 14 13 32 32 H 1.08002 * 120.41617 * 359.97438 * 19 18 16 33 33 H 1.08003 * 120.79223 * 179.72202 * 20 19 18 34 34 H 1.08007 * 120.41718 * 180.26474 * 21 20 19 35 35 H 1.07998 * 119.61686 * 179.76233 * 22 21 20 36 36 H 1.08994 * 110.37150 * 85.32742 * 24 13 11 37 37 H 1.08999 * 110.36636 * 323.00056 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 4.3110 -6.2451 0.0007 15 6 4.8664 -7.6847 0.0284 16 6 3.6845 -8.5019 0.6136 17 1 3.6693 -8.4437 1.7019 18 6 3.7388 -9.9359 0.1530 19 6 3.3037 -10.2622 -1.1177 20 6 3.3525 -11.5850 -1.5294 21 6 3.8497 -12.5328 -0.6476 22 6 4.2675 -12.1316 0.6069 23 7 4.2013 -10.8645 0.9668 24 6 2.4655 -7.7680 0.0008 25 1 -0.4850 0.8400 0.0004 26 1 3.1245 -3.7314 0.8905 27 1 3.1244 -3.7314 -0.8895 28 1 4.6484 -5.7349 -0.9015 29 1 4.6463 -5.7014 0.8839 30 1 5.7390 -7.7490 0.6784 31 1 5.1087 -8.0241 -0.9788 32 1 2.9259 -9.4970 -1.7797 33 1 3.0151 -11.8701 -2.5150 34 1 3.9062 -13.5720 -0.9365 35 1 4.6523 -12.8642 1.3009 36 1 2.2872 -8.1132 -1.0176 37 1 1.5795 -7.9251 0.6160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798718102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:48 Heat of formation + Delta-G solvation = -19.980027 kcal Electronic energy + Delta-G solvation = -19877.013617 eV Core-core repulsion = 16744.485123 eV Total energy + Delta-G solvation = -3132.528494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60777 -40.64762 -38.45127 -34.58885 -34.21079 -33.36210 -31.56783 -30.86307 -29.11553 -27.66669 -25.34312 -24.29749 -23.70705 -21.56667 -20.72748 -19.60278 -18.28174 -18.01439 -17.46510 -16.88417 -16.80223 -16.57927 -16.17790 -15.72437 -15.45720 -15.01147 -14.69507 -14.54141 -14.28435 -14.05826 -13.89836 -13.64177 -13.27042 -13.15534 -12.96507 -12.88785 -12.61718 -12.42028 -12.25957 -11.79078 -11.73031 -11.14175 -11.02250 -10.80038 -10.37971 -10.28756 -9.88128 -9.72786 -8.68505 -8.34687 -6.13541 0.15215 0.37325 1.22945 1.43078 1.44579 1.53179 1.56301 2.03900 2.27232 2.79280 2.99474 3.19383 3.23087 3.45208 3.56778 3.89791 3.92924 3.99344 4.11269 4.16559 4.22214 4.28530 4.30345 4.37421 4.44927 4.61025 4.69184 4.79354 4.82539 4.90998 4.99053 5.09993 5.24739 5.31320 5.33477 5.41762 5.79706 6.19853 6.34070 7.04975 7.06328 7.07686 8.74688 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.047572 B = 0.002712 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.442618 B =10323.573787 C =10624.767924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.119 4.119 11 C 0.547 3.453 12 O -0.567 6.567 13 N -0.616 5.616 14 C 0.093 3.907 15 C -0.104 4.104 16 C -0.045 4.045 17 H 0.095 0.905 18 C 0.128 3.872 19 C -0.179 4.179 20 C -0.075 4.075 21 C -0.173 4.173 22 C 0.088 3.912 23 N -0.510 5.510 24 C 0.111 3.889 25 H 0.271 0.729 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.085 0.915 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.884 -24.418 -2.695 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.270 4.270 11 C 0.335 3.665 12 O -0.445 6.445 13 N -0.351 5.351 14 C -0.029 4.029 15 C -0.142 4.142 16 C -0.065 4.065 17 H 0.114 0.886 18 C -0.009 4.009 19 C -0.199 4.199 20 C -0.101 4.101 21 C -0.193 4.193 22 C -0.069 4.069 23 N -0.220 5.220 24 C -0.012 4.012 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.194 0.806 36 H 0.103 0.897 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.210 -24.321 -1.857 27.739 hybrid contribution 0.917 1.008 -0.688 1.526 sum 14.127 -23.313 -2.545 27.378 Atomic orbital electron populations 1.70189 1.08012 1.28635 1.47996 1.26155 0.95988 1.03383 0.93714 0.84928 0.78185 0.75875 0.78834 1.19219 1.20338 1.18127 1.23186 0.95342 0.91793 1.58897 0.89823 1.85604 1.10569 0.99339 1.97046 1.23301 1.03411 0.93716 1.06573 1.19798 0.85396 0.85984 0.75316 1.90690 1.17062 1.85752 1.51015 1.48392 1.08021 1.05355 1.73357 1.22373 0.77741 0.99125 1.03686 1.22666 0.97149 0.91260 1.03126 1.21061 0.95181 0.88939 1.01281 0.88643 1.20781 0.95039 0.94209 0.90886 1.22203 1.01887 0.98604 0.97203 1.21993 0.94863 0.92257 1.00971 1.22513 0.99663 1.02347 0.94749 1.23223 0.95611 0.92107 0.95919 1.67413 1.15254 1.02668 1.36648 1.22410 0.97548 0.79554 1.01686 0.91980 0.87471 0.87235 0.89457 0.90025 0.87679 0.89052 0.83835 0.82258 0.81830 0.80598 0.89735 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.54 -31.28 9.50 67.95 0.65 -30.63 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 10 C -0.12 -4.88 5.35 71.23 0.38 -4.50 16 11 C 0.55 21.54 7.87 87.66 0.69 22.23 16 12 O -0.57 -27.66 16.12 -3.03 -0.05 -27.71 16 13 N -0.62 -17.46 3.33 -811.78 -2.70 -20.16 16 14 C 0.09 1.77 6.49 86.73 0.56 2.33 16 15 C -0.10 -1.52 6.41 31.78 0.20 -1.31 16 16 C -0.04 -0.85 3.42 -10.14 -0.03 -0.88 16 17 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 18 C 0.13 2.40 5.89 42.55 0.25 2.65 16 19 C -0.18 -2.77 9.14 22.36 0.20 -2.57 16 20 C -0.08 -0.87 10.18 22.47 0.23 -0.65 16 21 C -0.17 -1.82 10.11 22.36 0.23 -1.59 16 22 C 0.09 1.24 11.18 84.67 0.95 2.18 16 23 N -0.51 -10.09 10.27 -183.88 -1.89 -11.98 16 24 C 0.11 2.69 6.19 86.86 0.54 3.23 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 27 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.14 8.00 -2.38 -0.02 1.12 16 32 H 0.14 1.98 6.10 -2.91 -0.02 1.96 16 33 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.08 1.83 5.71 -2.39 -0.01 1.82 16 37 H 0.06 1.75 8.04 -2.39 -0.02 1.73 16 Total: -1.00 -79.71 328.58 2.89 -76.82 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.07 Total: 11.60 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.31 Total: -8.35 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -4.30 Total: -88.28 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -79.71 2.89 -76.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798718102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.841 kcal (2) G-P(sol) polarization free energy of solvation -79.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds