Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33638 * 122.74906 * 2 1 4 4 S 1.76193 * 107.92223 * 179.75641 * 3 2 1 5 5 C 1.70971 * 90.28483 * 0.28123 * 4 3 2 6 6 C 1.50701 * 124.91864 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47380 * 179.69819 * 6 5 4 8 8 C 1.47206 * 109.47095 * 59.69771 * 6 5 4 9 9 N 5.34031 * 146.92428 * 132.97615 * 2 1 3 10 10 C 1.50703 * 109.47064 * 299.69768 * 6 5 4 11 11 O 1.20751 * 120.00150 * 29.99798 * 10 6 5 12 12 C 1.50700 * 119.99695 * 210.00045 * 10 6 5 13 13 C 1.53003 * 109.47041 * 180.02562 * 12 10 6 14 14 C 1.53001 * 109.47320 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47108 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47045 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00247 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00199 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99677 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00367 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47144 * 120.00300 * 20 18 16 23 23 H 1.48496 * 109.47341 * 240.00408 * 20 18 16 24 24 N 1.29027 * 110.16702 * 359.71270 * 5 4 3 25 25 H 1.09000 * 109.47140 * 270.02795 * 1 2 3 26 26 H 1.08993 * 109.46838 * 30.02893 * 1 2 3 27 27 H 1.09001 * 109.46906 * 150.02752 * 1 2 3 28 28 H 1.08002 * 126.03783 * 359.97127 * 3 2 1 29 29 H 1.09009 * 109.47156 * 299.99266 * 12 10 6 30 30 H 1.08995 * 109.47727 * 59.99664 * 12 10 6 31 31 H 1.09005 * 109.46584 * 300.00225 * 13 12 10 32 32 H 1.08995 * 109.47339 * 59.99175 * 13 12 10 33 33 H 1.08997 * 109.46897 * 299.99560 * 14 13 12 34 34 H 1.09003 * 109.47013 * 59.99603 * 14 13 12 35 35 H 1.09002 * 109.47544 * 300.00227 * 15 14 13 36 36 H 1.09002 * 109.46740 * 59.99765 * 15 14 13 37 37 H 0.97001 * 119.99697 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0071 5 6 3.5040 -0.9818 0.0010 6 6 4.4835 -2.1271 0.0024 7 1 3.9387 -3.0712 0.0030 8 6 5.3293 -2.0479 1.2046 9 7 5.9820 -1.9868 2.1323 10 6 5.3504 -2.0482 -1.2278 11 8 5.6015 -0.9753 -1.7217 12 6 5.9038 -3.3083 -1.8417 13 6 6.7439 -2.9511 -3.0696 14 6 7.3063 -4.2304 -3.6925 15 6 8.1458 -3.8732 -4.9207 16 6 8.7003 -5.1332 -5.5338 17 1 8.4759 -6.0928 -5.0920 18 6 9.4931 -5.0611 -6.6595 19 7 9.7659 -3.8925 -7.1979 20 14 10.1798 -6.6229 -7.4201 21 1 9.7287 -7.7974 -6.6311 22 1 9.6924 -6.7489 -8.8171 23 1 11.6636 -6.5642 -7.4168 24 7 2.2199 -1.1083 0.0006 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.8392 2.1308 -0.0004 29 1 6.5284 -3.8240 -1.1122 30 1 5.0816 -3.9586 -2.1402 31 1 6.1197 -2.4352 -3.7992 32 1 7.5661 -2.3011 -2.7707 33 1 7.9305 -4.7459 -2.9627 34 1 6.4842 -4.8808 -3.9914 35 1 7.5213 -3.3579 -5.6504 36 1 8.9678 -3.2226 -4.6221 37 1 10.3240 -3.8418 -7.9896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805844762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = 16.679398 kcal Electronic energy + Delta-G solvation = -19425.433211 eV Core-core repulsion = 16294.494389 eV Total energy + Delta-G solvation = -3130.938822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71486 -39.76301 -37.08936 -35.07395 -33.72463 -32.71349 -31.05429 -29.66569 -27.96422 -25.97186 -24.01851 -22.55431 -20.52503 -20.18002 -20.05546 -18.87029 -17.57423 -16.43222 -16.36007 -16.12043 -15.49333 -15.05163 -14.84135 -14.40582 -14.20391 -14.03739 -13.61568 -13.32234 -13.24659 -12.85643 -12.75942 -12.59494 -12.41171 -12.31136 -11.77288 -11.71583 -11.56807 -11.04033 -10.63676 -10.56223 -10.49234 -10.26948 -10.07419 -9.67378 -9.62749 -9.25771 -9.08851 -8.98854 -8.33268 -5.98003 -4.00441 0.23262 0.97381 1.39901 1.42890 2.06958 2.16666 2.43350 3.05796 3.31909 3.39394 3.43163 3.61014 3.78102 4.34150 4.47355 4.65435 4.77689 4.82644 4.90044 5.18706 5.20647 5.23635 5.31698 5.37786 5.48269 5.74024 5.86005 6.01729 6.17344 6.41969 6.74116 6.90356 6.92145 7.04477 7.14760 7.29496 7.70840 7.85306 8.02869 8.44792 9.07475 9.63636 11.13361 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026774 B = 0.002616 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.528421 B =10700.011209 C =11024.778859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.063 3.937 3 C -0.266 4.266 4 S 0.200 5.800 5 C 0.027 3.973 6 C 0.039 3.961 7 H 0.169 0.831 8 C 0.210 3.790 9 N -0.384 5.384 10 C 0.368 3.632 11 O -0.414 6.414 12 C -0.162 4.162 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.452 5.452 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.180 0.820 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.367 8.468 16.670 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.406 4.406 4 S 0.456 5.544 5 C -0.250 4.250 6 C 0.013 3.987 7 H 0.186 0.814 8 C -0.110 4.110 9 N -0.059 5.059 10 C 0.237 3.763 11 O -0.282 6.282 12 C -0.199 4.199 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 N -0.168 5.168 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.197 0.803 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.393 9.266 17.662 25.817 hybrid contribution -0.837 -0.885 -0.816 1.467 sum -17.230 8.381 16.846 25.513 Atomic orbital electron populations 1.20365 0.86719 1.03621 1.03011 1.20242 0.98347 0.86178 1.02279 1.27138 0.96285 1.04343 1.12795 1.84398 1.05384 1.00544 1.64044 1.25683 0.93700 0.97818 1.07825 1.17791 0.91865 0.99951 0.89085 0.81396 1.27785 0.94298 0.94899 0.93971 1.81281 1.08107 1.06544 1.10018 1.24517 0.76966 0.92490 0.82343 1.90473 1.48232 1.31607 1.57924 1.22234 1.02176 0.95081 1.00419 1.21561 0.98826 0.99980 0.94581 1.21645 0.99286 0.94654 0.99227 1.19103 0.94478 0.96764 0.91442 1.21311 1.30236 0.93305 1.10972 0.92657 1.25044 0.96487 0.95957 0.97101 1.69983 1.38152 1.23420 1.21935 0.86557 0.78765 0.83665 0.79137 1.19748 1.21039 1.21053 1.66016 1.03673 1.32292 1.14817 0.90605 0.90586 0.90334 0.80259 0.87798 0.87326 0.91565 0.91722 0.93294 0.93200 0.96572 0.96620 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.31 36.01 0.37 -0.11 16 2 C 0.06 0.58 6.74 -84.22 -0.57 0.02 16 3 C -0.27 -2.26 11.13 29.12 0.32 -1.93 16 4 S 0.20 2.05 21.51 -107.50 -2.31 -0.27 16 5 C 0.03 0.29 5.85 -13.46 -0.08 0.21 16 6 C 0.04 0.35 2.94 -95.71 -0.28 0.07 16 7 H 0.17 0.96 8.12 -51.93 -0.42 0.54 16 8 C 0.21 2.24 14.45 -20.76 -0.30 1.94 16 9 N -0.38 -4.90 18.54 42.15 0.78 -4.12 16 10 C 0.37 4.03 6.16 -29.03 -0.18 3.85 16 11 O -0.41 -5.75 14.71 6.01 0.09 -5.66 16 12 C -0.16 -1.74 5.62 -27.88 -0.16 -1.90 16 13 C -0.11 -1.76 4.51 -26.73 -0.12 -1.88 16 14 C -0.11 -2.13 5.15 -26.73 -0.14 -2.26 16 15 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 N -0.45 -4.89 10.53 -8.06 -0.08 -4.98 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.34 8.12 -51.93 -0.42 -0.09 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -33.76 343.53 -7.34 -41.11 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: -5.03 Total: -6.34 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.68 Total: -15.14 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 1.43 Total: -35.49 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.09 Total: -5.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.31 Total: -0.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.76 -7.34 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805844762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.786 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds