Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33638 * 122.74906 * 2 1 4 4 S 1.76193 * 107.92223 * 179.75641 * 3 2 1 5 5 C 1.70971 * 90.28483 * 0.28123 * 4 3 2 6 6 C 1.50701 * 124.91864 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47380 * 179.69819 * 6 5 4 8 8 C 1.47206 * 109.47095 * 59.69771 * 6 5 4 9 9 N 5.34031 * 146.92428 * 132.97615 * 2 1 3 10 10 C 1.50703 * 109.47064 * 299.69768 * 6 5 4 11 11 O 1.20751 * 120.00150 * 29.99798 * 10 6 5 12 12 C 1.50700 * 119.99695 * 210.00045 * 10 6 5 13 13 C 1.53003 * 109.47041 * 180.02562 * 12 10 6 14 14 C 1.53001 * 109.47320 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47108 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47045 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00247 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00199 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99677 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00367 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47144 * 120.00300 * 20 18 16 23 23 H 1.48496 * 109.47341 * 240.00408 * 20 18 16 24 24 N 1.29027 * 110.16702 * 359.71270 * 5 4 3 25 25 H 1.09000 * 109.47140 * 270.02795 * 1 2 3 26 26 H 1.08993 * 109.46838 * 30.02893 * 1 2 3 27 27 H 1.09001 * 109.46906 * 150.02752 * 1 2 3 28 28 H 1.08002 * 126.03783 * 359.97127 * 3 2 1 29 29 H 1.09009 * 109.47156 * 299.99266 * 12 10 6 30 30 H 1.08995 * 109.47727 * 59.99664 * 12 10 6 31 31 H 1.09005 * 109.46584 * 300.00225 * 13 12 10 32 32 H 1.08995 * 109.47339 * 59.99175 * 13 12 10 33 33 H 1.08997 * 109.46897 * 299.99560 * 14 13 12 34 34 H 1.09003 * 109.47013 * 59.99603 * 14 13 12 35 35 H 1.09002 * 109.47544 * 300.00227 * 15 14 13 36 36 H 1.09002 * 109.46740 * 59.99765 * 15 14 13 37 37 H 0.97001 * 119.99697 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0071 5 6 3.5040 -0.9818 0.0010 6 6 4.4835 -2.1271 0.0024 7 1 3.9387 -3.0712 0.0030 8 6 5.3293 -2.0479 1.2046 9 7 5.9820 -1.9868 2.1323 10 6 5.3504 -2.0482 -1.2278 11 8 5.6015 -0.9753 -1.7217 12 6 5.9038 -3.3083 -1.8417 13 6 6.7439 -2.9511 -3.0696 14 6 7.3063 -4.2304 -3.6925 15 6 8.1458 -3.8732 -4.9207 16 6 8.7003 -5.1332 -5.5338 17 1 8.4759 -6.0928 -5.0920 18 6 9.4931 -5.0611 -6.6595 19 7 9.7659 -3.8925 -7.1979 20 14 10.1798 -6.6229 -7.4201 21 1 9.7287 -7.7974 -6.6311 22 1 9.6924 -6.7489 -8.8171 23 1 11.6636 -6.5642 -7.4168 24 7 2.2199 -1.1083 0.0006 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.8392 2.1308 -0.0004 29 1 6.5284 -3.8240 -1.1122 30 1 5.0816 -3.9586 -2.1402 31 1 6.1197 -2.4352 -3.7992 32 1 7.5661 -2.3011 -2.7707 33 1 7.9305 -4.7459 -2.9627 34 1 6.4842 -4.8808 -3.9914 35 1 7.5213 -3.3579 -5.6504 36 1 8.9678 -3.2226 -4.6221 37 1 10.3240 -3.8418 -7.9896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805844762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = -3.623981 kcal Electronic energy + Delta-G solvation = -19426.313631 eV Core-core repulsion = 16294.494389 eV Total energy + Delta-G solvation = -3131.819243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53388 -40.57216 -37.98582 -36.64922 -34.64601 -34.44820 -32.04784 -31.01237 -28.57049 -27.60921 -25.08388 -23.95989 -21.87973 -21.32521 -20.88107 -19.63856 -18.48245 -18.29139 -17.26981 -17.08157 -16.57576 -16.46660 -15.78592 -15.66638 -15.24789 -14.94342 -14.55109 -14.36017 -14.25165 -14.04939 -13.67185 -13.63586 -13.37343 -13.28899 -13.16056 -13.11519 -12.84117 -12.32476 -12.23955 -12.12749 -12.10838 -11.39891 -11.32660 -11.19183 -10.91075 -10.80976 -10.53679 -10.33037 -9.78844 -8.17639 -6.28874 -0.49354 0.25389 0.54644 0.72517 1.25914 1.34655 1.41788 1.41934 1.55419 1.69700 2.27000 2.43041 2.82008 3.00330 3.15651 3.64863 3.91137 4.06212 4.16861 4.19967 4.24405 4.31636 4.69185 4.73266 4.81053 4.84222 4.91222 4.93036 4.93792 5.22677 5.35332 5.36633 5.41909 5.60390 5.82564 5.91628 6.08997 6.19152 6.28477 6.56896 6.90561 7.40836 8.94631 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026774 B = 0.002616 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.528421 B =10700.011209 C =11024.778859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.044 3.956 3 C -0.253 4.253 4 S 0.160 5.840 5 C 0.016 3.984 6 C 0.048 3.952 7 H 0.209 0.791 8 C 0.232 3.768 9 N -0.423 5.423 10 C 0.375 3.625 11 O -0.449 6.449 12 C -0.155 4.155 13 C -0.106 4.106 14 C -0.098 4.098 15 C 0.017 3.983 16 C -0.539 4.539 17 H 0.065 0.935 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.966 3.034 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.281 1.281 24 N -0.461 5.461 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.208 0.792 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.064 0.936 35 H -0.013 1.013 36 H -0.016 1.016 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.065 6.820 17.488 27.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.392 4.392 4 S 0.415 5.585 5 C -0.261 4.261 6 C 0.023 3.977 7 H 0.226 0.774 8 C -0.087 4.087 9 N -0.099 5.099 10 C 0.246 3.754 11 O -0.320 6.320 12 C -0.191 4.191 13 C -0.144 4.144 14 C -0.135 4.135 15 C -0.020 4.020 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.790 3.210 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.207 1.207 24 N -0.177 5.177 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.225 0.775 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.005 0.995 36 H 0.002 0.998 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.112 7.605 18.502 26.986 hybrid contribution -0.350 -0.290 -1.100 1.191 sum -18.463 7.315 17.402 26.405 Atomic orbital electron populations 1.20466 0.84557 1.04464 1.03979 1.20801 0.99801 0.85987 1.02240 1.27449 0.94704 1.05586 1.11482 1.84561 1.07554 1.01620 1.64732 1.25842 0.93956 0.97835 1.08493 1.17860 0.91204 1.01479 0.87158 0.77400 1.27945 0.93486 0.93598 0.93680 1.81304 1.09283 1.07983 1.11351 1.24663 0.76312 0.91880 0.82511 1.90486 1.49485 1.32822 1.59173 1.22196 1.02846 0.95592 0.98484 1.21367 0.98785 0.97747 0.96513 1.21453 0.98892 0.96519 0.96680 1.19073 0.93981 0.95314 0.93610 1.21807 1.30202 0.94409 1.11276 0.91632 1.26057 0.96925 0.99579 0.97815 1.70131 1.39085 1.26058 1.22592 0.85383 0.77869 0.79476 0.78227 1.18111 1.20509 1.20668 1.66050 1.03706 1.33108 1.14859 0.89504 0.88715 0.90550 0.77544 0.85403 0.83847 0.92952 0.93611 0.92250 0.91699 0.99467 0.99782 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.31 71.24 0.73 -0.02 16 2 C 0.04 0.74 6.74 41.52 0.28 1.02 16 3 C -0.25 -3.90 11.13 66.78 0.74 -3.16 16 4 S 0.16 3.21 21.51 -56.49 -1.22 2.00 16 5 C 0.02 0.33 5.85 88.52 0.52 0.84 16 6 C 0.05 0.77 2.94 -14.09 -0.04 0.73 16 7 H 0.21 1.57 8.12 -2.39 -0.02 1.56 16 8 C 0.23 4.61 14.45 89.44 1.29 5.91 16 9 N -0.42 -10.49 18.54 20.01 0.37 -10.11 16 10 C 0.37 7.61 6.16 29.10 0.18 7.79 16 11 O -0.45 -12.44 14.71 -1.42 -0.02 -12.46 16 12 C -0.15 -2.90 5.62 29.85 0.17 -2.73 16 13 C -0.11 -3.30 4.51 30.60 0.14 -3.16 16 14 C -0.10 -3.69 5.15 30.59 0.16 -3.53 16 15 C 0.02 0.91 4.97 29.85 0.15 1.06 16 16 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 19 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 20 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 N -0.46 -9.16 10.53 -179.40 -1.89 -11.05 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.57 8.12 -2.39 -0.02 0.55 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.21 1.82 8.06 -2.91 -0.02 1.79 16 29 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.75 8.10 -2.38 -0.02 1.73 16 32 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -75.66 343.53 5.64 -70.02 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: 1.07 Total: -1.32 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 5.01 Total: -25.49 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -1.23 Total: -79.07 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.02 Total: -12.46 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.22 Total: 2.00 kcal Total: -75.66 5.64 -70.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805844762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.399 kcal (2) G-P(sol) polarization free energy of solvation -75.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds