Wall clock time and date at job start Tue Mar 31 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33641 * 122.74895 * 2 1 4 4 S 1.76199 * 107.92544 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28389 * 0.02562 * 4 3 2 6 6 C 1.50693 * 124.91997 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47579 * 180.02562 * 6 5 4 8 8 C 1.47201 * 109.47156 * 300.02693 * 6 5 4 9 9 N 5.34045 * 146.93824 * 226.98439 * 2 1 3 10 10 C 1.50699 * 109.46895 * 60.02652 * 6 5 4 11 11 O 1.20759 * 120.00277 * 334.99541 * 10 6 5 12 12 C 1.50698 * 119.99996 * 155.00479 * 10 6 5 13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 6 14 14 C 1.52997 * 109.47127 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47188 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99966 * 180.02562 * 16 15 14 19 19 N 1.31505 * 119.99945 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47178 * 119.99393 * 20 18 16 23 23 H 1.48498 * 109.47163 * 239.99655 * 20 18 16 24 24 N 1.29034 * 110.16283 * 0.24225 * 5 4 3 25 25 H 1.08997 * 109.46805 * 89.97307 * 1 2 3 26 26 H 1.09001 * 109.46806 * 209.96945 * 1 2 3 27 27 H 1.08999 * 109.46716 * 329.97100 * 1 2 3 28 28 H 1.07997 * 126.03625 * 0.04487 * 3 2 1 29 29 H 1.09001 * 109.47612 * 60.00091 * 12 10 6 30 30 H 1.09001 * 109.47122 * 299.99922 * 12 10 6 31 31 H 1.09001 * 109.47002 * 299.99404 * 13 12 10 32 32 H 1.08993 * 109.46955 * 59.99842 * 13 12 10 33 33 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 34 34 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 35 35 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 36 36 H 1.08992 * 109.47534 * 59.99520 * 15 14 13 37 37 H 0.97007 * 119.99787 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5041 -0.9819 -0.0018 6 6 4.4835 -2.1271 -0.0033 7 1 3.9388 -3.0712 -0.0042 8 6 5.3294 -2.0476 -1.2054 9 7 5.9828 -1.9875 -2.1302 10 6 5.3503 -2.0483 1.2269 11 8 5.5278 -0.9863 1.7736 12 6 5.9958 -3.2950 1.7749 13 6 6.8151 -2.9410 3.0177 14 6 7.4699 -4.2068 3.5744 15 6 8.2886 -3.8529 4.8175 16 6 8.9341 -5.0996 5.3655 17 1 8.7759 -6.0493 4.8763 18 6 9.7259 -5.0278 6.4920 19 7 9.9181 -3.8714 7.0880 20 14 10.5254 -6.5732 7.1716 21 1 10.1544 -7.7357 6.3253 22 1 12.0013 -6.4092 7.1687 23 1 10.0557 -6.8033 8.5614 24 7 2.2199 -1.1083 -0.0066 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 1.8392 2.1308 0.0007 29 1 6.6508 -3.7275 1.0186 30 1 5.2237 -4.0164 2.0425 31 1 7.5872 -2.2195 2.7505 32 1 6.1598 -2.5087 3.7738 33 1 6.6976 -4.9280 3.8416 34 1 8.1251 -4.6395 2.8183 35 1 9.0610 -3.1316 4.5507 36 1 7.6331 -3.4205 5.5733 37 1 10.4755 -3.8209 7.8804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805844763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:20 Heat of formation + Delta-G solvation = 16.991748 kcal Electronic energy + Delta-G solvation = -19426.094378 eV Core-core repulsion = 16295.169100 eV Total energy + Delta-G solvation = -3130.925278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71528 -39.75521 -37.13488 -35.07573 -33.72132 -32.71636 -31.05906 -29.66458 -27.96081 -25.97394 -24.00907 -22.54214 -20.53471 -20.18128 -20.06271 -18.85282 -17.57998 -16.43557 -16.36817 -16.11804 -15.47924 -15.04211 -14.85891 -14.40675 -14.21756 -14.02503 -13.61592 -13.33033 -13.25166 -12.85452 -12.75860 -12.59612 -12.42132 -12.31273 -11.77309 -11.71615 -11.56765 -11.04090 -10.63766 -10.56270 -10.49294 -10.27190 -10.06722 -9.67413 -9.62346 -9.25600 -9.08262 -8.98923 -8.33375 -5.98028 -4.00436 0.24158 0.98126 1.39831 1.43194 2.07857 2.17865 2.43343 3.06730 3.31906 3.39385 3.43150 3.59989 3.78333 4.34365 4.47344 4.65789 4.77713 4.82841 4.90400 5.18684 5.20304 5.23772 5.31903 5.37797 5.48519 5.73859 5.86313 6.01616 6.17263 6.41920 6.74054 6.90153 6.91997 7.04649 7.14729 7.30049 7.70844 7.85303 8.02819 8.44788 9.07456 9.63625 11.13335 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.002606 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.528078 B =10739.852977 C =11064.773855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.063 3.937 3 C -0.266 4.266 4 S 0.199 5.801 5 C 0.028 3.972 6 C 0.038 3.962 7 H 0.170 0.830 8 C 0.211 3.789 9 N -0.384 5.384 10 C 0.367 3.633 11 O -0.413 6.413 12 C -0.162 4.162 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.453 5.453 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.180 0.820 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 8.425 -16.430 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.405 4.405 4 S 0.456 5.544 5 C -0.249 4.249 6 C 0.013 3.987 7 H 0.187 0.813 8 C -0.109 4.109 9 N -0.059 5.059 10 C 0.237 3.763 11 O -0.282 6.282 12 C -0.199 4.199 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 N -0.169 5.169 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.197 0.803 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.752 9.215 -17.384 25.841 hybrid contribution -0.780 -0.880 0.772 1.407 sum -17.532 8.336 -16.612 25.550 Atomic orbital electron populations 1.20363 0.86729 1.03610 1.03005 1.20239 0.98338 0.86185 1.02277 1.27126 0.96229 1.04333 1.12856 1.84365 1.05493 1.00568 1.64009 1.25681 0.93701 0.97836 1.07722 1.17793 0.91861 0.99962 0.89127 0.81333 1.27695 0.94301 0.94937 0.93980 1.81197 1.08114 1.06511 1.10094 1.24508 0.77461 0.92046 0.82320 1.90478 1.50803 1.31578 1.55345 1.22230 1.01464 0.95346 1.00894 1.21559 0.98834 1.00035 0.94502 1.21645 0.98821 0.94779 0.99571 1.19102 0.94547 0.96778 0.91361 1.21312 1.29220 0.94486 1.10816 0.92660 1.25041 0.96660 0.95942 0.96935 1.69977 1.39078 1.23990 1.20434 0.86559 0.79154 0.83542 0.78879 1.19747 1.21051 1.21037 1.66018 1.03682 1.32290 1.14866 0.90611 0.90345 0.90588 0.80268 0.87856 0.87339 0.91718 0.91552 0.93200 0.93304 0.96620 0.96567 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.31 36.01 0.37 -0.11 16 2 C 0.06 0.59 6.74 -84.22 -0.57 0.02 16 3 C -0.27 -2.26 11.13 29.12 0.32 -1.94 16 4 S 0.20 2.04 21.52 -107.50 -2.31 -0.27 16 5 C 0.03 0.30 5.81 -13.46 -0.08 0.22 16 6 C 0.04 0.35 2.93 -95.71 -0.28 0.07 16 7 H 0.17 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.21 2.23 14.45 -20.83 -0.30 1.93 16 9 N -0.38 -4.86 18.52 42.07 0.78 -4.08 16 10 C 0.37 4.03 6.22 -29.04 -0.18 3.84 16 11 O -0.41 -5.74 14.62 6.00 0.09 -5.65 16 12 C -0.16 -1.75 5.64 -27.88 -0.16 -1.91 16 13 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 14 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 15 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 16 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 20 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 N -0.45 -4.92 10.53 -8.06 -0.08 -5.01 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 28 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -33.75 343.47 -7.35 -41.10 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -5.03 Total: -6.32 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.68 Total: -15.17 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 1.43 Total: -35.49 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: 0.09 Total: -5.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.31 Total: -0.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.75 -7.35 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805844763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.092 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds