Wall clock time and date at job start Tue Mar 31 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33641 * 122.74895 * 2 1 4 4 S 1.76199 * 107.92544 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28389 * 0.02562 * 4 3 2 6 6 C 1.50693 * 124.91997 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47579 * 180.02562 * 6 5 4 8 8 C 1.47201 * 109.47156 * 300.02693 * 6 5 4 9 9 N 5.34045 * 146.93824 * 226.98439 * 2 1 3 10 10 C 1.50699 * 109.46895 * 60.02652 * 6 5 4 11 11 O 1.20759 * 120.00277 * 334.99541 * 10 6 5 12 12 C 1.50698 * 119.99996 * 155.00479 * 10 6 5 13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 6 14 14 C 1.52997 * 109.47127 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47188 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99966 * 180.02562 * 16 15 14 19 19 N 1.31505 * 119.99945 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47309 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47178 * 119.99393 * 20 18 16 23 23 H 1.48498 * 109.47163 * 239.99655 * 20 18 16 24 24 N 1.29034 * 110.16283 * 0.24225 * 5 4 3 25 25 H 1.08997 * 109.46805 * 89.97307 * 1 2 3 26 26 H 1.09001 * 109.46806 * 209.96945 * 1 2 3 27 27 H 1.08999 * 109.46716 * 329.97100 * 1 2 3 28 28 H 1.07997 * 126.03625 * 0.04487 * 3 2 1 29 29 H 1.09001 * 109.47612 * 60.00091 * 12 10 6 30 30 H 1.09001 * 109.47122 * 299.99922 * 12 10 6 31 31 H 1.09001 * 109.47002 * 299.99404 * 13 12 10 32 32 H 1.08993 * 109.46955 * 59.99842 * 13 12 10 33 33 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 34 34 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 35 35 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 36 36 H 1.08992 * 109.47534 * 59.99520 * 15 14 13 37 37 H 0.97007 * 119.99787 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 -0.0007 5 6 3.5041 -0.9819 -0.0018 6 6 4.4835 -2.1271 -0.0033 7 1 3.9388 -3.0712 -0.0042 8 6 5.3294 -2.0476 -1.2054 9 7 5.9828 -1.9875 -2.1302 10 6 5.3503 -2.0483 1.2269 11 8 5.5278 -0.9863 1.7736 12 6 5.9958 -3.2950 1.7749 13 6 6.8151 -2.9410 3.0177 14 6 7.4699 -4.2068 3.5744 15 6 8.2886 -3.8529 4.8175 16 6 8.9341 -5.0996 5.3655 17 1 8.7759 -6.0493 4.8763 18 6 9.7259 -5.0278 6.4920 19 7 9.9181 -3.8714 7.0880 20 14 10.5254 -6.5732 7.1716 21 1 10.1544 -7.7357 6.3253 22 1 12.0013 -6.4092 7.1687 23 1 10.0557 -6.8033 8.5614 24 7 2.2199 -1.1083 -0.0066 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 1.8392 2.1308 0.0007 29 1 6.6508 -3.7275 1.0186 30 1 5.2237 -4.0164 2.0425 31 1 7.5872 -2.2195 2.7505 32 1 6.1598 -2.5087 3.7738 33 1 6.6976 -4.9280 3.8416 34 1 8.1251 -4.6395 2.8183 35 1 9.0610 -3.1316 4.5507 36 1 7.6331 -3.4205 5.5733 37 1 10.4755 -3.8209 7.8804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805844763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:19 Heat of formation + Delta-G solvation = -3.277676 kcal Electronic energy + Delta-G solvation = -19426.973326 eV Core-core repulsion = 16295.169100 eV Total energy + Delta-G solvation = -3131.804226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53612 -40.56526 -38.02694 -36.65325 -34.64573 -34.44928 -32.05668 -31.01158 -28.56985 -27.61126 -25.08536 -23.94164 -21.88317 -21.33577 -20.88901 -19.62225 -18.48416 -18.29887 -17.27877 -17.08077 -16.57279 -16.46225 -15.78149 -15.68465 -15.24361 -14.94966 -14.55188 -14.35787 -14.25371 -14.05507 -13.67964 -13.63292 -13.37338 -13.29132 -13.16977 -13.11524 -12.84331 -12.32624 -12.24115 -12.13024 -12.11260 -11.40308 -11.32985 -11.19396 -10.91389 -10.80484 -10.53871 -10.32613 -9.78445 -8.17756 -6.28965 -0.48590 0.26079 0.54553 0.72465 1.27145 1.36203 1.41673 1.41820 1.55277 1.69571 2.27958 2.42923 2.80931 3.00511 3.15549 3.64865 3.90993 4.06380 4.16447 4.19459 4.24457 4.31770 4.68788 4.72531 4.81050 4.84054 4.90951 4.92424 4.93722 5.22344 5.35234 5.36372 5.41601 5.60161 5.82356 5.91433 6.08977 6.19351 6.28360 6.57258 6.90399 7.40710 8.94507 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.002606 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.528078 B =10739.852977 C =11064.773855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.044 3.956 3 C -0.253 4.253 4 S 0.160 5.840 5 C 0.017 3.983 6 C 0.048 3.952 7 H 0.210 0.790 8 C 0.233 3.767 9 N -0.422 5.422 10 C 0.375 3.625 11 O -0.448 6.448 12 C -0.155 4.155 13 C -0.106 4.106 14 C -0.098 4.098 15 C 0.017 3.983 16 C -0.539 4.539 17 H 0.065 0.935 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.966 3.034 21 H -0.258 1.258 22 H -0.281 1.281 23 H -0.279 1.279 24 N -0.462 5.462 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.208 0.792 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.058 0.942 35 H -0.016 1.016 36 H -0.013 1.013 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 6.811 -17.327 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.392 4.392 4 S 0.416 5.584 5 C -0.261 4.261 6 C 0.023 3.977 7 H 0.226 0.774 8 C -0.086 4.086 9 N -0.098 5.098 10 C 0.246 3.754 11 O -0.319 6.319 12 C -0.192 4.192 13 C -0.144 4.144 14 C -0.136 4.136 15 C -0.020 4.020 16 C -0.577 4.577 17 H 0.083 0.917 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.181 1.181 22 H -0.207 1.207 23 H -0.205 1.205 24 N -0.178 5.178 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.224 0.776 29 H 0.144 0.856 30 H 0.162 0.838 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.002 0.998 36 H 0.006 0.994 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.343 7.588 -18.304 27.001 hybrid contribution -0.335 -0.296 1.082 1.170 sum -18.678 7.292 -17.222 26.432 Atomic orbital electron populations 1.20464 0.84569 1.04450 1.03974 1.20798 0.99797 0.85998 1.02244 1.27439 0.94668 1.05573 1.11550 1.84521 1.07636 1.01611 1.64676 1.25848 0.93960 0.97880 1.08376 1.17854 0.91203 1.01462 0.87224 0.77379 1.27833 0.93491 0.93652 0.93674 1.81220 1.09274 1.07929 1.11395 1.24640 0.76852 0.91397 0.82469 1.90491 1.51999 1.32770 1.56636 1.22190 1.02095 0.96008 0.98869 1.21363 0.98651 0.97789 0.96578 1.21453 0.98596 0.96660 0.96845 1.19071 0.94016 0.95283 0.93601 1.21806 1.29259 0.95552 1.11100 0.91655 1.26053 0.97393 0.99480 0.97434 1.70125 1.40049 1.26590 1.21075 0.85385 0.77903 0.79438 0.78240 1.18131 1.20662 1.20494 1.66051 1.03732 1.33118 1.14930 0.89507 0.90572 0.88711 0.77550 0.85624 0.83820 0.93602 0.92880 0.91692 0.92316 0.99777 0.99433 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.31 71.24 0.73 -0.02 16 2 C 0.04 0.74 6.74 41.52 0.28 1.02 16 3 C -0.25 -3.92 11.13 66.78 0.74 -3.18 16 4 S 0.16 3.22 21.52 -56.49 -1.22 2.00 16 5 C 0.02 0.34 5.81 88.52 0.51 0.85 16 6 C 0.05 0.76 2.93 -14.09 -0.04 0.72 16 7 H 0.21 1.60 8.14 -2.39 -0.02 1.58 16 8 C 0.23 4.58 14.45 89.47 1.29 5.87 16 9 N -0.42 -10.36 18.52 19.98 0.37 -9.99 16 10 C 0.38 7.62 6.22 29.10 0.18 7.80 16 11 O -0.45 -12.39 14.62 -1.45 -0.02 -12.42 16 12 C -0.15 -2.93 5.64 29.85 0.17 -2.77 16 13 C -0.11 -3.30 4.50 30.60 0.14 -3.16 16 14 C -0.10 -3.70 5.15 30.59 0.16 -3.55 16 15 C 0.02 0.92 4.97 29.85 0.15 1.07 16 16 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 19 N -0.94 -58.17 13.29 21.45 0.28 -57.89 16 20 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 N -0.46 -9.25 10.53 -179.40 -1.89 -11.14 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 0.58 8.12 -2.39 -0.02 0.56 16 28 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 32 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 35 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -75.54 343.47 5.64 -69.90 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: 1.07 Total: -1.21 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 5.01 Total: -25.60 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.23 Total: -79.01 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.02 Total: -12.42 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.22 Total: 2.00 kcal Total: -75.54 5.64 -69.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805844763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.619 kcal (2) G-P(sol) polarization free energy of solvation -75.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds