Wall clock time and date at job start Tue Mar 31 2020 06:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47056 * 207.58263 * 3 2 1 5 5 C 1.52990 * 109.47368 * 327.58718 * 3 2 1 6 6 N 1.46506 * 109.47169 * 87.58880 * 3 2 1 7 7 C 1.34773 * 120.00059 * 155.27262 * 6 3 2 8 8 O 1.21592 * 120.00110 * 359.72353 * 7 6 3 9 9 N 1.34780 * 119.99938 * 179.72848 * 7 6 3 10 10 C 1.40136 * 119.99937 * 174.33307 * 9 7 6 11 11 C 1.38698 * 120.07529 * 335.22623 * 10 9 7 12 12 C 1.38203 * 120.02128 * 179.77008 * 11 10 9 13 13 C 1.38546 * 120.17038 * 0.50515 * 12 11 10 14 14 F 1.35102 * 119.92077 * 179.76820 * 13 12 11 15 15 C 1.38335 * 120.15334 * 359.74748 * 13 12 11 16 16 C 1.38740 * 119.98166 * 0.02562 * 15 13 12 17 17 O 1.35778 * 120.09218 * 179.97438 * 16 15 13 18 18 C 1.34812 * 116.99732 * 5.19300 * 17 16 15 19 19 H 1.07998 * 119.99674 * 354.97647 * 18 17 16 20 20 C 1.38636 * 119.99653 * 174.98078 * 18 17 16 21 21 N 1.31563 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99556 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47360 * 60.00003 * 22 20 18 24 24 H 1.48497 * 109.46643 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47122 * 299.99549 * 22 20 18 26 26 H 4.18742 * 15.03915 * 359.97438 * 4 2 1 27 27 H 1.08998 * 109.47445 * 300.00398 * 5 3 2 28 28 H 1.09003 * 109.46892 * 60.00324 * 5 3 2 29 29 H 1.08996 * 109.47400 * 179.97438 * 5 3 2 30 30 H 0.97004 * 120.00082 * 335.00447 * 6 3 2 31 31 H 0.96991 * 119.99732 * 354.32696 * 9 7 6 32 32 H 1.08000 * 119.98699 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.90947 * 180.23197 * 12 11 10 34 34 H 1.08003 * 120.01109 * 180.02562 * 15 13 12 35 35 H 0.97004 * 120.00172 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9117 0.4759 5 6 3.1566 -1.2168 0.7731 6 7 3.1344 -0.0572 -1.3800 7 6 4.3583 0.4192 -1.6823 8 8 5.0552 0.9018 -0.8105 9 7 4.8098 0.3610 -2.9509 10 6 6.0299 0.9617 -3.2886 11 6 6.5211 2.0129 -2.5287 12 6 7.7268 2.6014 -2.8599 13 6 8.4433 2.1512 -3.9570 14 9 9.6192 2.7333 -4.2790 15 6 7.9576 1.1067 -4.7231 16 6 6.7501 0.5082 -4.3934 17 8 6.2710 -0.5168 -5.1441 18 6 7.0664 -0.9766 -6.1308 19 1 8.0004 -0.4796 -6.3472 20 6 6.6851 -2.0874 -6.8675 21 7 5.5474 -2.6930 -6.6035 22 14 7.7874 -2.7249 -8.2342 23 1 9.1071 -3.1049 -7.6691 24 1 7.1582 -3.9136 -8.8636 25 1 7.9735 -1.6634 -9.2559 26 1 -1.0500 -0.0006 -0.0009 27 1 2.7932 -1.1738 1.7999 28 1 2.7937 -2.1278 0.2972 29 1 4.2465 -1.2165 0.7728 30 1 2.5784 -0.4421 -2.0756 31 1 4.2902 -0.0968 -3.6300 32 1 5.9630 2.3689 -1.6753 33 1 8.1094 3.4173 -2.2647 34 1 8.5182 0.7573 -5.5775 35 1 5.2804 -3.4700 -7.1192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806349275.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:41 Heat of formation + Delta-G solvation = -13.471244 kcal Electronic energy + Delta-G solvation = -22381.417789 eV Core-core repulsion = 18682.958360 eV Total energy + Delta-G solvation = -3698.459428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.21808 -40.37462 -38.88881 -36.76276 -35.83874 -34.09103 -32.58588 -32.39783 -30.22041 -29.34208 -27.96561 -25.50622 -24.17143 -22.46219 -21.61700 -20.51302 -19.05426 -18.32041 -18.14660 -17.40356 -16.74288 -15.68937 -15.45772 -15.20806 -15.00871 -14.81832 -14.54473 -14.27535 -13.85928 -13.72213 -13.51532 -13.37218 -13.10906 -12.30388 -12.27037 -12.14846 -11.75262 -11.67209 -11.39894 -10.99130 -10.87940 -10.73076 -10.57419 -10.52839 -9.88972 -9.80405 -9.49737 -9.09743 -8.95021 -7.85412 -7.03229 -6.59730 -4.17321 1.86389 2.13898 2.22057 2.60301 3.07498 3.08969 3.10969 3.19065 3.40058 3.85402 4.05370 4.39036 4.44846 4.85717 4.98575 5.12271 5.14390 5.17738 5.46539 5.59052 5.70784 5.75710 5.81481 6.03256 6.13039 6.20603 6.44728 6.62374 6.66827 6.92636 6.96149 7.07231 7.14116 7.29078 7.33805 7.67834 7.84345 8.21465 8.77252 8.86561 9.47292 10.57497 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.004800 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.448285 B = 5831.520808 C = 7746.379465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.197 4.197 3 C 0.273 3.727 4 H 0.110 0.890 5 C -0.160 4.160 6 N -0.741 5.741 7 C 0.707 3.293 8 O -0.582 6.582 9 N -0.661 5.661 10 C 0.084 3.916 11 C -0.063 4.063 12 C -0.224 4.224 13 C 0.123 3.877 14 F -0.152 7.152 15 C -0.256 4.256 16 C 0.154 3.846 17 O -0.172 6.172 18 C -0.392 4.392 19 H 0.094 0.906 20 C 0.043 3.957 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 H 0.220 0.780 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.401 0.599 31 H 0.414 0.586 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 3.731 8.538 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.169 3.831 4 H 0.128 0.872 5 C -0.218 4.218 6 N -0.397 5.397 7 C 0.408 3.592 8 O -0.461 6.461 9 N -0.307 5.307 10 C -0.011 4.011 11 C -0.084 4.084 12 C -0.244 4.244 13 C 0.104 3.896 14 F -0.131 7.131 15 C -0.277 4.277 16 C 0.098 3.902 17 O -0.075 6.075 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.162 4.162 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 H 0.237 0.763 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.235 0.765 31 H 0.250 0.750 32 H 0.167 0.833 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.467 3.834 9.233 11.907 hybrid contribution 0.086 -0.744 -1.503 1.680 sum -6.381 3.090 7.730 10.489 Atomic orbital electron populations 1.24973 0.95852 1.01016 0.97892 1.23058 0.94180 1.00421 1.02081 1.17500 0.82423 1.00847 0.82367 0.87244 1.22177 1.02782 0.97067 0.99792 1.45141 1.17146 1.67123 1.10278 1.15782 0.81459 0.79132 0.82799 1.90852 1.56530 1.51634 1.47044 1.42232 1.21771 1.57635 1.09099 1.16696 0.88759 0.98134 0.97539 1.20811 0.95531 0.92718 0.99300 1.20496 0.98024 1.05747 1.00136 1.17457 0.82186 0.94137 0.95868 1.91407 1.45666 1.83430 1.92601 1.20819 0.99990 1.01461 1.05400 1.18679 0.90871 0.89815 0.90852 1.83897 1.41770 1.41218 1.40606 1.21288 1.03331 1.12337 1.09816 0.88877 1.25264 0.97056 0.95172 0.98667 1.69994 1.20424 1.19790 1.39363 0.85755 0.79307 0.78618 0.79694 1.19371 1.20220 1.19362 0.76287 0.91368 0.92047 0.90644 0.76532 0.75007 0.83304 0.85960 0.83976 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 19.25 29.55 0.57 -1.03 16 2 C -0.20 -2.12 12.75 -37.12 -0.47 -2.60 16 3 C 0.27 3.25 3.01 -70.72 -0.21 3.03 16 4 H 0.11 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.16 -1.76 9.44 37.15 0.35 -1.41 16 6 N -0.74 -9.89 5.06 -61.44 -0.31 -10.21 16 7 C 0.71 12.06 8.33 -86.92 -0.72 11.33 16 8 O -0.58 -11.20 13.18 5.28 0.07 -11.13 16 9 N -0.66 -12.17 5.30 -14.07 -0.07 -12.25 16 10 C 0.08 1.74 6.45 -83.43 -0.54 1.20 16 11 C -0.06 -1.22 8.72 -39.42 -0.34 -1.56 16 12 C -0.22 -4.18 10.02 -39.48 -0.40 -4.58 16 13 C 0.12 2.48 7.29 -39.43 -0.29 2.19 16 14 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 15 C -0.26 -5.59 9.14 -39.36 -0.36 -5.95 16 16 C 0.15 3.54 6.66 -38.94 -0.26 3.28 16 17 O -0.17 -4.46 9.17 0.01 0.00 -4.46 16 18 C -0.39 -10.31 9.49 30.88 0.29 -10.02 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 20 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 21 N -0.86 -23.45 13.67 55.48 0.76 -22.69 16 22 Si 0.94 19.68 29.55 -169.99 -5.02 14.65 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H 0.22 1.15 7.80 -54.09 -0.42 0.73 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.40 4.69 8.60 -40.82 -0.35 4.34 16 31 H 0.41 7.35 8.36 -40.82 -0.34 7.01 16 32 H 0.15 2.81 5.78 -52.49 -0.30 2.50 16 33 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.14 3.10 5.63 -52.48 -0.30 2.80 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -29.83 320.31 -5.40 -35.23 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -3.21 Total: 13.99 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.48 Total: -5.09 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.37 Total: -45.14 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.07 Total: -15.58 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.83 -5.40 -35.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806349275.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.762 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds