Wall clock time and date at job start Tue Mar 31 2020 06:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47056 * 207.58263 * 3 2 1 5 5 C 1.52990 * 109.47368 * 327.58718 * 3 2 1 6 6 N 1.46506 * 109.47169 * 87.58880 * 3 2 1 7 7 C 1.34773 * 120.00059 * 155.27262 * 6 3 2 8 8 O 1.21592 * 120.00110 * 359.72353 * 7 6 3 9 9 N 1.34780 * 119.99938 * 179.72848 * 7 6 3 10 10 C 1.40136 * 119.99937 * 174.33307 * 9 7 6 11 11 C 1.38698 * 120.07529 * 335.22623 * 10 9 7 12 12 C 1.38203 * 120.02128 * 179.77008 * 11 10 9 13 13 C 1.38546 * 120.17038 * 0.50515 * 12 11 10 14 14 F 1.35102 * 119.92077 * 179.76820 * 13 12 11 15 15 C 1.38335 * 120.15334 * 359.74748 * 13 12 11 16 16 C 1.38740 * 119.98166 * 0.02562 * 15 13 12 17 17 O 1.35778 * 120.09218 * 179.97438 * 16 15 13 18 18 C 1.34812 * 116.99732 * 5.19300 * 17 16 15 19 19 H 1.07998 * 119.99674 * 354.97647 * 18 17 16 20 20 C 1.38636 * 119.99653 * 174.98078 * 18 17 16 21 21 N 1.31563 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99556 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47360 * 60.00003 * 22 20 18 24 24 H 1.48497 * 109.46643 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47122 * 299.99549 * 22 20 18 26 26 H 4.18742 * 15.03915 * 359.97438 * 4 2 1 27 27 H 1.08998 * 109.47445 * 300.00398 * 5 3 2 28 28 H 1.09003 * 109.46892 * 60.00324 * 5 3 2 29 29 H 1.08996 * 109.47400 * 179.97438 * 5 3 2 30 30 H 0.97004 * 120.00082 * 335.00447 * 6 3 2 31 31 H 0.96991 * 119.99732 * 354.32696 * 9 7 6 32 32 H 1.08000 * 119.98699 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.90947 * 180.23197 * 12 11 10 34 34 H 1.08003 * 120.01109 * 180.02562 * 15 13 12 35 35 H 0.97004 * 120.00172 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9117 0.4759 5 6 3.1566 -1.2168 0.7731 6 7 3.1344 -0.0572 -1.3800 7 6 4.3583 0.4192 -1.6823 8 8 5.0552 0.9018 -0.8105 9 7 4.8098 0.3610 -2.9509 10 6 6.0299 0.9617 -3.2886 11 6 6.5211 2.0129 -2.5287 12 6 7.7268 2.6014 -2.8599 13 6 8.4433 2.1512 -3.9570 14 9 9.6192 2.7333 -4.2790 15 6 7.9576 1.1067 -4.7231 16 6 6.7501 0.5082 -4.3934 17 8 6.2710 -0.5168 -5.1441 18 6 7.0664 -0.9766 -6.1308 19 1 8.0004 -0.4796 -6.3472 20 6 6.6851 -2.0874 -6.8675 21 7 5.5474 -2.6930 -6.6035 22 14 7.7874 -2.7249 -8.2342 23 1 9.1071 -3.1049 -7.6691 24 1 7.1582 -3.9136 -8.8636 25 1 7.9735 -1.6634 -9.2559 26 1 -1.0500 -0.0006 -0.0009 27 1 2.7932 -1.1738 1.7999 28 1 2.7937 -2.1278 0.2972 29 1 4.2465 -1.2165 0.7728 30 1 2.5784 -0.4421 -2.0756 31 1 4.2902 -0.0968 -3.6300 32 1 5.9630 2.3689 -1.6753 33 1 8.1094 3.4173 -2.2647 34 1 8.5182 0.7573 -5.5775 35 1 5.2804 -3.4700 -7.1192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806349275.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:40 Heat of formation + Delta-G solvation = -32.382444 kcal Electronic energy + Delta-G solvation = -22382.237840 eV Core-core repulsion = 18682.958360 eV Total energy + Delta-G solvation = -3699.279479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.79944 -41.83908 -40.49532 -38.28405 -37.12409 -35.59462 -34.29978 -33.55499 -31.31483 -30.95437 -29.49071 -27.38408 -25.23277 -24.03939 -23.18785 -21.89310 -20.26852 -20.02961 -19.63946 -18.79060 -18.10788 -17.15646 -16.97678 -16.69168 -16.57684 -16.23169 -15.97144 -15.72238 -15.43375 -15.23884 -15.01666 -14.85520 -14.33429 -13.98013 -13.75113 -13.44112 -13.21250 -13.02974 -12.65858 -12.57255 -12.35304 -12.16171 -11.71721 -11.64962 -11.41658 -11.31307 -11.02777 -10.80769 -10.25482 -9.53421 -8.67656 -8.50316 -6.15835 0.22906 0.47745 1.20389 1.37774 1.46208 1.51439 1.82657 1.98012 2.12246 2.16357 2.71737 3.03386 3.16360 3.23572 3.30062 3.47820 3.95086 4.15602 4.20169 4.25618 4.37184 4.59279 4.63538 4.82526 4.96627 4.98368 5.03988 5.22015 5.24046 5.29559 5.33000 5.43565 5.55360 5.88701 5.94669 6.08253 6.59830 6.87126 6.94582 7.38532 7.63560 8.70257 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.004800 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.448285 B = 5831.520808 C = 7746.379465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.243 4.243 3 C 0.273 3.727 4 H 0.101 0.899 5 C -0.154 4.154 6 N -0.727 5.727 7 C 0.708 3.292 8 O -0.604 6.604 9 N -0.665 5.665 10 C 0.085 3.915 11 C -0.064 4.064 12 C -0.199 4.199 13 C 0.117 3.883 14 F -0.145 7.145 15 C -0.261 4.261 16 C 0.127 3.873 17 O -0.205 6.205 18 C -0.416 4.416 19 H 0.099 0.901 20 C -0.009 4.009 21 N -0.906 5.906 22 Si 1.011 2.989 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.259 1.259 26 H 0.256 0.744 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.409 0.591 31 H 0.415 0.585 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 4.490 9.333 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.243 4.243 3 C 0.169 3.831 4 H 0.119 0.881 5 C -0.212 4.212 6 N -0.382 5.382 7 C 0.409 3.591 8 O -0.484 6.484 9 N -0.311 5.311 10 C -0.011 4.011 11 C -0.084 4.084 12 C -0.218 4.218 13 C 0.097 3.903 14 F -0.124 7.124 15 C -0.281 4.281 16 C 0.073 3.927 17 O -0.110 6.110 18 C -0.492 4.492 19 H 0.117 0.883 20 C -0.208 4.208 21 N -0.543 5.543 22 Si 0.830 3.170 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.183 1.183 26 H 0.272 0.728 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.245 0.755 31 H 0.251 0.749 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.154 0.846 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.976 4.617 10.064 13.087 hybrid contribution 0.165 -0.804 -1.539 1.744 sum -6.810 3.813 8.525 11.558 Atomic orbital electron populations 1.25839 0.96561 0.98548 0.95234 1.22944 0.94192 1.02712 1.04470 1.17508 0.83706 1.00789 0.81091 0.88137 1.22120 1.01309 0.96803 1.01014 1.45127 1.15814 1.65814 1.11479 1.15853 0.82253 0.79055 0.81970 1.90820 1.57468 1.52745 1.47378 1.42267 1.21243 1.57749 1.09794 1.16953 0.89212 0.98113 0.96799 1.21010 0.95934 0.92257 0.99241 1.20890 0.96817 1.05223 0.98919 1.17450 0.82690 0.93990 0.96196 1.91425 1.45204 1.83166 1.92603 1.20904 0.99704 1.01993 1.05549 1.19018 0.91908 0.89925 0.91823 1.83877 1.42615 1.42871 1.41652 1.21703 1.03915 1.13078 1.10481 0.88343 1.26362 0.98470 0.95054 1.00924 1.70107 1.22374 1.20702 1.41116 0.84750 0.77378 0.78213 0.76616 1.18716 1.19494 1.18328 0.72800 0.89299 0.91850 0.92763 0.75537 0.74914 0.82283 0.82463 0.84583 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 19.25 74.32 1.43 -0.72 16 2 C -0.24 -4.83 12.75 31.13 0.40 -4.43 16 3 C 0.27 6.32 3.01 43.18 0.13 6.45 16 4 H 0.10 2.49 7.58 -2.38 -0.02 2.47 16 5 C -0.15 -3.31 9.44 71.98 0.68 -2.63 16 6 N -0.73 -19.25 5.06 -466.56 -2.36 -21.62 16 7 C 0.71 24.14 8.33 179.05 1.49 25.63 16 8 O -0.60 -23.04 13.18 -4.00 -0.05 -23.09 16 9 N -0.66 -24.84 5.30 -316.69 -1.68 -26.52 16 10 C 0.09 3.55 6.45 38.22 0.25 3.80 16 11 C -0.06 -2.38 8.72 22.37 0.19 -2.19 16 12 C -0.20 -6.95 10.02 22.33 0.22 -6.72 16 13 C 0.12 4.53 7.29 22.37 0.16 4.70 16 14 F -0.15 -5.32 17.26 44.97 0.78 -4.54 16 15 C -0.26 -11.48 9.14 22.41 0.20 -11.27 16 16 C 0.13 5.97 6.66 22.69 0.15 6.12 16 17 O -0.20 -11.06 9.17 -22.87 -0.21 -11.27 16 18 C -0.42 -22.60 9.49 67.92 0.64 -21.96 16 19 H 0.10 5.02 5.20 -2.91 -0.02 5.00 16 20 C -0.01 -0.45 5.49 84.83 0.47 0.01 16 21 N -0.91 -50.89 13.67 21.61 0.30 -50.60 16 22 Si 1.01 40.71 29.55 68.60 2.03 42.73 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 H 0.26 1.57 7.80 -4.42 -0.03 1.53 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.41 9.47 8.60 -92.71 -0.80 8.67 16 31 H 0.41 15.26 8.36 -92.72 -0.77 14.48 16 32 H 0.16 5.73 5.78 -2.91 -0.02 5.71 16 33 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.14 6.06 5.63 -2.91 -0.02 6.04 16 35 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -65.40 320.31 4.82 -60.58 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.40 Total: 37.53 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 6.42 Total: -3.21 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -3.74 Total: -98.73 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.26 Total: -34.36 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -65.40 4.82 -60.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806349275.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.202 kcal (2) G-P(sol) polarization free energy of solvation -65.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds