Wall clock time and date at job start Tue Mar 31 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47064 * 49.73038 * 3 2 1 5 5 C 1.53005 * 109.47073 * 289.72832 * 3 2 1 6 6 N 1.46499 * 109.46947 * 169.73054 * 3 2 1 7 7 C 1.34779 * 120.00118 * 204.99627 * 6 3 2 8 8 O 1.21593 * 119.99670 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00388 * 179.97438 * 7 6 3 10 10 C 1.40134 * 120.00138 * 174.33369 * 9 7 6 11 11 C 1.38694 * 120.07647 * 335.22804 * 10 9 7 12 12 C 1.38200 * 120.02102 * 179.76852 * 11 10 9 13 13 C 1.38544 * 120.17533 * 0.51058 * 12 11 10 14 14 F 1.35098 * 119.92478 * 179.76684 * 13 12 11 15 15 C 1.38348 * 120.14733 * 359.74811 * 13 12 11 16 16 C 1.38733 * 119.97999 * 359.97438 * 15 13 12 17 17 O 1.35783 * 120.08930 * 179.97438 * 16 15 13 18 18 C 1.34812 * 116.99459 * 5.18912 * 17 16 15 19 19 H 1.07997 * 120.00302 * 354.98198 * 18 17 16 20 20 C 1.38635 * 119.99333 * 174.98473 * 18 17 16 21 21 N 1.31579 * 119.99338 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00465 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47500 * 89.99761 * 22 20 18 24 24 H 1.48508 * 109.47177 * 210.00272 * 22 20 18 25 25 H 1.48504 * 109.46952 * 329.99607 * 22 20 18 26 26 H 4.18729 * 15.03984 * 0.02562 * 4 2 1 27 27 H 1.09003 * 109.46644 * 60.00568 * 5 3 2 28 28 H 1.08999 * 109.47120 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.47343 * 300.00035 * 5 3 2 30 30 H 0.96995 * 120.00471 * 25.00278 * 6 3 2 31 31 H 0.97003 * 119.99791 * 354.33708 * 9 7 6 32 32 H 1.08000 * 119.98853 * 0.02577 * 11 10 9 33 33 H 1.08000 * 119.90903 * 180.23791 * 12 11 10 34 34 H 1.08004 * 120.00810 * 180.02562 * 15 13 12 35 35 H 0.97001 * 119.99618 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.6634 -0.7841 5 6 3.1562 -0.4861 1.3579 6 7 3.1337 1.3600 -0.2462 7 6 4.3556 1.5508 -0.7820 8 8 5.0530 0.5948 -1.0613 9 7 4.8041 2.8013 -1.0090 10 6 6.1173 3.0047 -1.4540 11 6 7.0963 2.0597 -1.1857 12 6 8.3899 2.2593 -1.6293 13 6 8.7155 3.4072 -2.3333 14 9 9.9827 3.5993 -2.7604 15 6 7.7456 4.3571 -2.6003 16 6 6.4438 4.1605 -2.1630 17 8 5.4903 5.0915 -2.4233 18 6 5.8476 6.1319 -3.2026 19 1 6.8735 6.2400 -3.5222 20 6 4.8979 7.0632 -3.5936 21 7 5.2465 8.0783 -4.3546 22 14 3.1233 6.8760 -3.0413 23 1 2.9284 7.5869 -1.7523 24 1 2.2213 7.4567 -4.0683 25 1 2.8093 5.4353 -2.8644 26 1 -1.0499 -0.0001 -0.0009 27 1 2.7934 -1.4975 1.5410 28 1 4.2462 -0.4860 1.3577 29 1 2.7926 0.1780 2.1420 30 1 2.5773 2.1227 -0.0237 31 1 4.2179 3.5605 -0.8643 32 1 6.8468 1.1657 -0.6336 33 1 9.1500 1.5204 -1.4227 34 1 8.0018 5.2510 -3.1497 35 1 4.5821 8.7301 -4.6279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806349278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:43 Heat of formation + Delta-G solvation = -10.687361 kcal Electronic energy + Delta-G solvation = -22472.498932 eV Core-core repulsion = 18774.160222 eV Total energy + Delta-G solvation = -3698.338710 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.26508 -40.53470 -39.07050 -36.93397 -35.97700 -34.25590 -32.69367 -32.50343 -30.34701 -29.54979 -28.15297 -25.44648 -24.30440 -22.51170 -21.63874 -20.67815 -19.17382 -18.45828 -18.12140 -17.59579 -16.86913 -15.80534 -15.54622 -15.37190 -15.14716 -14.97173 -14.62435 -14.14316 -14.05418 -13.82171 -13.61378 -13.40934 -13.22385 -12.46910 -12.38475 -12.31822 -11.90323 -11.83243 -11.53808 -11.03871 -10.92543 -10.81350 -10.65230 -10.47929 -10.01384 -9.79082 -9.56708 -9.25586 -9.01178 -7.96308 -7.19013 -6.54666 -4.21898 1.75732 2.01937 2.10516 2.52362 3.05996 3.09594 3.13013 3.21898 3.24946 3.96109 4.07900 4.26798 4.27373 4.53463 4.94608 4.99914 5.00768 5.06079 5.34881 5.48197 5.61892 5.67448 5.70482 5.89693 5.97975 6.04839 6.30720 6.45012 6.60491 6.81574 6.88031 6.96559 7.09205 7.25867 7.45919 7.64744 7.87129 8.03844 8.61807 8.78358 9.33167 10.52623 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.005697 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.435701 B = 4913.451054 C = 7257.015128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.200 4.200 3 C 0.273 3.727 4 H 0.111 0.889 5 C -0.158 4.158 6 N -0.742 5.742 7 C 0.707 3.293 8 O -0.578 6.578 9 N -0.665 5.665 10 C 0.083 3.917 11 C -0.063 4.063 12 C -0.216 4.216 13 C 0.124 3.876 14 F -0.149 7.149 15 C -0.243 4.243 16 C 0.161 3.839 17 O -0.212 6.212 18 C -0.390 4.390 19 H 0.109 0.891 20 C 0.066 3.934 21 N -0.872 5.872 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.261 1.261 26 H 0.221 0.779 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.399 0.601 31 H 0.410 0.590 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 -12.486 10.020 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.201 4.201 3 C 0.168 3.832 4 H 0.129 0.871 5 C -0.216 4.216 6 N -0.397 5.397 7 C 0.408 3.592 8 O -0.456 6.456 9 N -0.311 5.311 10 C -0.011 4.011 11 C -0.083 4.083 12 C -0.237 4.237 13 C 0.104 3.896 14 F -0.128 7.128 15 C -0.263 4.263 16 C 0.106 3.894 17 O -0.117 6.117 18 C -0.465 4.465 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.509 5.509 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.185 1.185 26 H 0.238 0.762 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.233 0.767 31 H 0.245 0.755 32 H 0.169 0.831 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.133 -13.120 9.709 17.436 hybrid contribution -1.265 1.053 0.039 1.646 sum -7.398 -12.067 9.748 17.186 Atomic orbital electron populations 1.25000 0.95884 0.97769 1.00758 1.23040 0.94185 1.02270 1.00576 1.17518 0.82510 0.83897 0.99262 0.87149 1.22163 1.02645 1.01388 0.95421 1.45157 1.17529 1.08479 1.68557 1.15778 0.81504 0.83522 0.78385 1.90867 1.56569 1.40126 1.57994 1.42231 1.13088 1.07052 1.68715 1.16702 0.83575 0.95728 1.05136 1.20806 0.90035 0.98785 0.98715 1.20563 0.97553 0.98482 1.07074 1.17469 0.78599 0.95466 0.98070 1.91424 1.37660 1.95447 1.88271 1.20952 0.92090 1.02791 1.10491 1.18387 0.88473 0.88639 0.93876 1.83489 1.35211 1.30987 1.61993 1.20753 0.98450 0.99736 1.27592 0.87353 1.24465 0.99756 0.94419 0.95220 1.69648 1.35890 1.12250 1.33152 0.86199 0.82598 0.79460 0.78694 1.19749 1.20639 1.18488 0.76246 0.91271 0.90691 0.92134 0.76665 0.75523 0.83140 0.85725 0.83331 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 19.25 29.55 0.57 -0.92 16 2 C -0.20 -2.03 12.75 -37.12 -0.47 -2.50 16 3 C 0.27 2.96 3.02 -70.72 -0.21 2.75 16 4 H 0.11 1.32 7.58 -51.93 -0.39 0.93 16 5 C -0.16 -1.45 9.44 37.16 0.35 -1.10 16 6 N -0.74 -8.96 5.06 -61.44 -0.31 -9.27 16 7 C 0.71 11.11 8.33 -86.92 -0.72 10.39 16 8 O -0.58 -10.43 13.18 5.28 0.07 -10.36 16 9 N -0.66 -11.19 5.30 -14.07 -0.07 -11.27 16 10 C 0.08 1.62 6.45 -83.44 -0.54 1.08 16 11 C -0.06 -1.14 8.71 -39.43 -0.34 -1.49 16 12 C -0.22 -3.86 10.02 -39.48 -0.40 -4.25 16 13 C 0.12 2.43 7.29 -39.43 -0.29 2.14 16 14 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 15 C -0.24 -5.22 9.14 -39.36 -0.36 -5.58 16 16 C 0.16 3.52 6.66 -38.94 -0.26 3.26 16 17 O -0.21 -5.09 8.00 0.00 0.00 -5.09 16 18 C -0.39 -10.37 9.95 30.88 0.31 -10.07 16 19 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 20 C 0.07 1.74 5.49 -17.51 -0.10 1.65 16 21 N -0.87 -24.22 13.96 55.48 0.77 -23.44 16 22 Si 0.91 20.06 28.62 -169.99 -4.86 15.20 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 26 H 0.22 1.07 7.80 -54.09 -0.42 0.65 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 31 H 0.41 6.36 8.36 -40.82 -0.34 6.02 16 32 H 0.15 2.64 5.78 -52.49 -0.30 2.34 16 33 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.15 3.36 5.63 -52.48 -0.30 3.06 16 35 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -29.72 319.19 -5.24 -34.96 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -3.22 Total: 11.93 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.46 Total: -4.65 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.39 Total: -43.98 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.07 Total: -15.45 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.86 Total: 15.20 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.72 -5.24 -34.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806349278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.275 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds