Wall clock time and date at job start Tue Mar 31 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47064 * 49.73038 * 3 2 1 5 5 C 1.53005 * 109.47073 * 289.72832 * 3 2 1 6 6 N 1.46499 * 109.46947 * 169.73054 * 3 2 1 7 7 C 1.34779 * 120.00118 * 204.99627 * 6 3 2 8 8 O 1.21593 * 119.99670 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00388 * 179.97438 * 7 6 3 10 10 C 1.40134 * 120.00138 * 174.33369 * 9 7 6 11 11 C 1.38694 * 120.07647 * 335.22804 * 10 9 7 12 12 C 1.38200 * 120.02102 * 179.76852 * 11 10 9 13 13 C 1.38544 * 120.17533 * 0.51058 * 12 11 10 14 14 F 1.35098 * 119.92478 * 179.76684 * 13 12 11 15 15 C 1.38348 * 120.14733 * 359.74811 * 13 12 11 16 16 C 1.38733 * 119.97999 * 359.97438 * 15 13 12 17 17 O 1.35783 * 120.08930 * 179.97438 * 16 15 13 18 18 C 1.34812 * 116.99459 * 5.18912 * 17 16 15 19 19 H 1.07997 * 120.00302 * 354.98198 * 18 17 16 20 20 C 1.38635 * 119.99333 * 174.98473 * 18 17 16 21 21 N 1.31579 * 119.99338 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00465 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47500 * 89.99761 * 22 20 18 24 24 H 1.48508 * 109.47177 * 210.00272 * 22 20 18 25 25 H 1.48504 * 109.46952 * 329.99607 * 22 20 18 26 26 H 4.18729 * 15.03984 * 0.02562 * 4 2 1 27 27 H 1.09003 * 109.46644 * 60.00568 * 5 3 2 28 28 H 1.08999 * 109.47120 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.47343 * 300.00035 * 5 3 2 30 30 H 0.96995 * 120.00471 * 25.00278 * 6 3 2 31 31 H 0.97003 * 119.99791 * 354.33708 * 9 7 6 32 32 H 1.08000 * 119.98853 * 0.02577 * 11 10 9 33 33 H 1.08000 * 119.90903 * 180.23791 * 12 11 10 34 34 H 1.08004 * 120.00810 * 180.02562 * 15 13 12 35 35 H 0.97001 * 119.99618 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.6634 -0.7841 5 6 3.1562 -0.4861 1.3579 6 7 3.1337 1.3600 -0.2462 7 6 4.3556 1.5508 -0.7820 8 8 5.0530 0.5948 -1.0613 9 7 4.8041 2.8013 -1.0090 10 6 6.1173 3.0047 -1.4540 11 6 7.0963 2.0597 -1.1857 12 6 8.3899 2.2593 -1.6293 13 6 8.7155 3.4072 -2.3333 14 9 9.9827 3.5993 -2.7604 15 6 7.7456 4.3571 -2.6003 16 6 6.4438 4.1605 -2.1630 17 8 5.4903 5.0915 -2.4233 18 6 5.8476 6.1319 -3.2026 19 1 6.8735 6.2400 -3.5222 20 6 4.8979 7.0632 -3.5936 21 7 5.2465 8.0783 -4.3546 22 14 3.1233 6.8760 -3.0413 23 1 2.9284 7.5869 -1.7523 24 1 2.2213 7.4567 -4.0683 25 1 2.8093 5.4353 -2.8644 26 1 -1.0499 -0.0001 -0.0009 27 1 2.7934 -1.4975 1.5410 28 1 4.2462 -0.4860 1.3577 29 1 2.7926 0.1780 2.1420 30 1 2.5773 2.1227 -0.0237 31 1 4.2179 3.5605 -0.8643 32 1 6.8468 1.1657 -0.6336 33 1 9.1500 1.5204 -1.4227 34 1 8.0018 5.2510 -3.1497 35 1 4.5821 8.7301 -4.6279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806349278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:42 Heat of formation + Delta-G solvation = -29.746401 kcal Electronic energy + Delta-G solvation = -22473.325394 eV Core-core repulsion = 18774.160222 eV Total energy + Delta-G solvation = -3699.165172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.83264 -41.90819 -40.61219 -38.39729 -37.15291 -35.65783 -34.47183 -33.57317 -31.35487 -31.09787 -29.59442 -27.32786 -25.25557 -23.99365 -23.19880 -21.95214 -20.27319 -20.11062 -19.72097 -18.89661 -18.14495 -17.28753 -16.97831 -16.74948 -16.60414 -16.30566 -15.88219 -15.80440 -15.55559 -15.25918 -15.04248 -14.87319 -14.35516 -14.26484 -13.81913 -13.60231 -13.15976 -13.11684 -12.65659 -12.60058 -12.40987 -12.17957 -11.73097 -11.64422 -11.40770 -11.39748 -11.03027 -10.92336 -10.28124 -9.60503 -8.75990 -8.51690 -6.25670 0.17545 0.40890 1.16588 1.32863 1.37866 1.50613 1.82010 1.97294 2.08642 2.25805 2.65464 2.76225 3.02977 3.16460 3.29875 3.39450 3.89948 4.14189 4.20275 4.27433 4.28508 4.51723 4.65738 4.85805 4.88656 5.01488 5.09548 5.18139 5.24924 5.28529 5.40754 5.45310 5.59418 5.81370 5.88012 6.09082 6.59030 6.80015 6.85151 7.34407 7.45216 8.59347 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.005697 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.435701 B = 4913.451054 C = 7257.015128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.243 4.243 3 C 0.271 3.729 4 H 0.095 0.905 5 C -0.151 4.151 6 N -0.726 5.726 7 C 0.708 3.292 8 O -0.601 6.601 9 N -0.666 5.666 10 C 0.096 3.904 11 C -0.062 4.062 12 C -0.188 4.188 13 C 0.113 3.887 14 F -0.147 7.147 15 C -0.253 4.253 16 C 0.135 3.865 17 O -0.223 6.223 18 C -0.401 4.401 19 H 0.080 0.920 20 C 0.012 3.988 21 N -0.920 5.920 22 Si 0.972 3.028 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.251 1.251 26 H 0.254 0.746 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.410 0.590 31 H 0.416 0.584 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.127 0.873 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 -14.744 11.836 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.243 4.243 3 C 0.168 3.832 4 H 0.113 0.887 5 C -0.209 4.209 6 N -0.382 5.382 7 C 0.409 3.591 8 O -0.481 6.481 9 N -0.313 5.313 10 C 0.000 4.000 11 C -0.082 4.082 12 C -0.207 4.207 13 C 0.093 3.907 14 F -0.126 7.126 15 C -0.274 4.274 16 C 0.083 3.917 17 O -0.130 6.130 18 C -0.477 4.477 19 H 0.097 0.903 20 C -0.187 4.187 21 N -0.560 5.560 22 Si 0.793 3.207 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.175 1.175 26 H 0.270 0.730 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.246 0.754 31 H 0.252 0.748 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.144 0.856 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.050 -15.413 11.563 20.882 hybrid contribution -0.569 1.525 -0.452 1.689 sum -8.619 -13.888 11.111 19.764 Atomic orbital electron populations 1.25839 0.96631 0.95418 0.98623 1.23022 0.94332 1.04385 1.02584 1.17542 0.83486 0.82599 0.99613 0.88673 1.22098 1.01674 1.02468 0.94659 1.45110 1.16240 1.09760 1.67052 1.15833 0.82330 0.82638 0.78268 1.90841 1.57581 1.40603 1.59043 1.42241 1.12346 1.07946 1.68733 1.16849 0.85130 0.94596 1.03426 1.21060 0.89826 0.98770 0.98569 1.20964 0.98154 0.97659 1.03961 1.17511 0.78399 0.95838 0.98974 1.91429 1.37287 1.95498 1.88341 1.20953 0.93009 1.02780 1.10644 1.18693 0.88402 0.89529 0.95118 1.83439 1.35558 1.31106 1.62857 1.20644 0.97589 1.01031 1.28411 0.90280 1.25330 1.04260 0.93882 0.95230 1.69747 1.37528 1.13541 1.35173 0.85206 0.76884 0.79926 0.78708 1.18402 1.20051 1.17507 0.73018 0.89721 0.92023 0.91362 0.75388 0.74794 0.81646 0.82141 0.85562 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 19.25 74.32 1.43 -0.55 16 2 C -0.24 -4.31 12.75 31.13 0.40 -3.91 16 3 C 0.27 5.41 3.02 43.19 0.13 5.54 16 4 H 0.10 2.18 7.58 -2.39 -0.02 2.16 16 5 C -0.15 -2.48 9.44 71.98 0.68 -1.80 16 6 N -0.73 -16.14 5.06 -466.56 -2.36 -18.50 16 7 C 0.71 21.03 8.33 179.06 1.49 22.53 16 8 O -0.60 -20.64 13.18 -4.01 -0.05 -20.70 16 9 N -0.67 -21.46 5.30 -316.70 -1.68 -23.13 16 10 C 0.10 3.62 6.45 38.22 0.25 3.87 16 11 C -0.06 -2.11 8.71 22.37 0.19 -1.91 16 12 C -0.19 -6.19 10.02 22.33 0.22 -5.97 16 13 C 0.11 4.35 7.29 22.37 0.16 4.51 16 14 F -0.15 -5.51 17.26 44.97 0.78 -4.74 16 15 C -0.25 -11.23 9.14 22.41 0.20 -11.02 16 16 C 0.13 5.98 6.66 22.68 0.15 6.13 16 17 O -0.22 -10.93 8.00 -22.93 -0.18 -11.12 16 18 C -0.40 -22.28 9.95 67.91 0.68 -21.60 16 19 H 0.08 4.72 5.44 -2.91 -0.02 4.70 16 20 C 0.01 0.66 5.49 84.83 0.47 1.13 16 21 N -0.92 -53.07 13.96 21.61 0.30 -52.77 16 22 Si 0.97 41.46 28.62 68.60 1.96 43.42 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 26 H 0.25 1.30 7.80 -4.42 -0.03 1.27 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.41 7.42 8.60 -92.71 -0.80 6.63 16 31 H 0.42 12.31 8.36 -92.71 -0.78 11.54 16 32 H 0.17 5.31 5.78 -2.91 -0.02 5.30 16 33 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.13 6.14 5.63 -2.91 -0.02 6.13 16 35 H 0.29 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -65.80 319.19 4.82 -60.98 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.41 Total: 29.61 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 6.46 Total: -3.07 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -3.74 Total: -94.40 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.24 Total: -31.81 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.78 Total: -4.74 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.96 Total: 43.42 kcal Total: -65.80 4.82 -60.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806349278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.238 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds