Wall clock time and date at job start Tue Mar 31 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86805 * 119.99780 * 2 1 4 4 H 1.48497 * 109.46893 * 90.00002 * 3 2 1 5 5 H 1.48500 * 109.47176 * 210.00040 * 3 2 1 6 6 H 1.48503 * 109.46966 * 330.00186 * 3 2 1 7 7 C 1.38619 * 120.00504 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00427 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.35667 * 116.99958 * 174.94864 * 9 7 2 11 11 C 1.39067 * 119.91522 * 185.28163 * 10 9 7 12 12 C 1.37731 * 120.08819 * 179.72324 * 11 10 9 13 13 C 1.39794 * 119.91018 * 0.56692 * 12 11 10 14 14 C 1.47397 * 120.08734 * 179.68303 * 13 12 11 15 15 N 1.29807 * 119.99483 * 0.02562 * 14 13 12 16 16 N 1.40100 * 119.99483 * 180.02562 * 15 14 13 17 17 C 1.46505 * 119.99945 * 180.02562 * 16 15 14 18 18 H 1.09000 * 108.85038 * 29.30020 * 17 16 15 19 19 C 1.52944 * 108.88881 * 147.87175 * 17 16 15 20 20 C 1.54832 * 109.12747 * 90.65345 * 19 17 16 21 21 S 1.83987 * 100.88002 * 41.43101 * 20 19 17 22 22 C 1.53704 * 108.88717 * 270.72076 * 17 16 15 23 23 C 1.39797 * 119.82834 * 359.70675 * 13 12 11 24 24 C 1.37735 * 119.91063 * 359.97438 * 23 13 12 25 25 H 0.97002 * 119.99906 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.95421 * 359.97438 * 11 10 9 27 27 H 1.08005 * 120.04361 * 180.29445 * 12 11 10 28 28 H 1.07999 * 119.99866 * 180.02562 * 14 13 12 29 29 H 0.96998 * 120.00174 * 359.97438 * 16 15 14 30 30 H 1.08998 * 109.60419 * 210.62143 * 19 17 16 31 31 H 1.08998 * 109.60545 * 330.76681 * 19 17 16 32 32 H 1.09000 * 111.11791 * 283.54142 * 20 19 17 33 33 H 1.08994 * 111.20705 * 159.36063 * 20 19 17 34 34 H 1.08992 * 110.34232 * 0.90427 * 22 17 16 35 35 H 1.08997 * 110.34224 * 123.04996 * 22 17 16 36 36 H 1.08005 * 120.04178 * 180.02562 * 23 13 12 37 37 H 1.08001 * 119.95292 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 1.4001 5 1 3.5473 1.4403 -0.7000 6 1 1.4471 2.6527 -0.7000 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2004 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0697 -3.5034 -0.1075 11 6 1.4321 -4.7337 -0.2245 12 6 2.1746 -5.8881 -0.3390 13 6 3.5709 -5.8230 -0.3257 14 6 4.3693 -7.0566 -0.4410 15 7 3.7758 -8.2053 -0.5556 16 7 4.5347 -9.3780 -0.6646 17 6 3.8650 -10.6745 -0.7946 18 1 2.9071 -10.5276 -1.2935 19 6 4.7333 -11.5966 -1.6519 20 6 5.6942 -12.3886 -0.7317 21 16 4.5711 -12.8093 0.6635 22 6 3.6123 -11.2469 0.6093 23 6 4.2082 -4.5848 -0.2021 24 6 3.4586 -3.4343 -0.0947 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3533 -4.7836 -0.2296 27 1 1.6786 -6.8427 -0.4346 28 1 5.4480 -7.0047 -0.4300 29 1 5.5035 -9.3314 -0.6548 30 1 4.0977 -12.2918 -2.2003 31 1 5.3134 -11.0013 -2.3571 32 1 6.5210 -11.7628 -0.3957 33 1 6.0611 -13.2882 -1.2258 34 1 3.9718 -10.5551 1.3709 35 1 2.5503 -11.4470 0.7514 36 1 5.2868 -4.5305 -0.1918 37 1 3.9502 -2.4774 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808003736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:46 Heat of formation + Delta-G solvation = 34.506674 kcal Electronic energy + Delta-G solvation = -19438.288490 eV Core-core repulsion = 16308.122717 eV Total energy + Delta-G solvation = -3130.165773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.16460 -38.01841 -36.87714 -35.02769 -32.42400 -31.15947 -30.34383 -29.48015 -27.63511 -25.21864 -24.86372 -22.63815 -21.91057 -20.76057 -20.12199 -18.46611 -17.34500 -16.95418 -16.68825 -15.83456 -15.33999 -14.91712 -14.76014 -14.47925 -14.04683 -13.83777 -13.65799 -13.36313 -13.09226 -12.89669 -12.53450 -12.32080 -12.16614 -11.96865 -11.61898 -11.30577 -11.19649 -11.04741 -10.81860 -10.42720 -10.35562 -10.31421 -9.88574 -9.46632 -8.93426 -8.32038 -8.30832 -8.05087 -6.98447 -6.86029 -4.13736 1.49589 1.57243 1.97592 2.15759 2.85122 3.01357 3.19718 3.27880 3.39119 4.04801 4.09993 4.30086 4.56939 4.59823 4.68764 4.86384 4.99801 5.07401 5.09539 5.12373 5.21367 5.27900 5.39521 5.52802 5.63003 5.70414 5.77356 6.05492 6.16845 6.44261 6.56233 6.77480 6.98532 7.10295 7.18934 7.24915 7.49341 7.64084 8.30561 8.54376 8.81516 9.49804 10.57382 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.052422 B = 0.002269 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.998307 B =12335.180732 C =12591.841325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.011 3.989 3 Si 1.099 2.901 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.471 4.471 8 H 0.087 0.913 9 O -0.195 6.195 10 C 0.166 3.834 11 C -0.202 4.202 12 C -0.035 4.035 13 C -0.152 4.152 14 C 0.106 3.894 15 N -0.257 5.257 16 N -0.669 5.669 17 C 0.185 3.815 18 H 0.097 0.903 19 C -0.134 4.134 20 C -0.068 4.068 21 S -0.305 6.305 22 C -0.080 4.080 23 C -0.044 4.044 24 C -0.235 4.235 25 H 0.284 0.716 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.369 0.631 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.058 -19.342 -2.582 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.196 4.196 3 Si 0.923 3.077 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.105 0.895 9 O -0.098 6.098 10 C 0.111 3.889 11 C -0.221 4.221 12 C -0.055 4.055 13 C -0.156 4.156 14 C -0.104 4.104 15 N -0.063 5.063 16 N -0.407 5.407 17 C 0.076 3.924 18 H 0.115 0.885 19 C -0.174 4.174 20 C -0.216 4.216 21 S -0.080 6.080 22 C -0.230 4.230 23 C -0.065 4.065 24 C -0.254 4.254 25 H 0.094 0.906 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.116 0.884 29 H 0.207 0.793 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.510 -19.227 -1.920 21.536 hybrid contribution 1.732 -0.488 -0.537 1.878 sum 11.242 -19.715 -2.458 22.827 Atomic orbital electron populations 1.70552 1.06609 1.31838 1.41714 1.26602 0.96824 1.01262 0.94870 0.83047 0.74207 0.72961 0.77490 1.20605 1.20714 1.19982 1.22303 0.93290 0.82083 1.56987 0.89526 1.83638 1.35893 1.12435 1.77827 1.19402 0.90328 0.87293 0.91889 1.20163 0.99626 0.90240 1.12103 1.20797 0.92595 0.96947 0.95204 1.17841 0.92565 0.90157 1.15027 1.23915 0.96485 0.90544 0.99428 1.74286 1.25129 0.93343 1.13592 1.48071 1.04896 1.01369 1.86358 1.21028 0.97440 0.81540 0.92353 0.88519 1.22639 0.97894 0.98462 0.98414 1.24301 0.98844 1.03243 0.95249 1.87921 1.42725 1.28600 1.48771 1.24763 1.02507 0.94642 1.01066 1.20791 0.98393 0.91144 0.96123 1.21061 0.93588 0.98978 1.11772 0.90623 0.86475 0.86046 0.88438 0.79318 0.88887 0.89261 0.89330 0.87401 0.88525 0.87932 0.87021 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.70 55.48 0.76 -24.82 16 2 C 0.01 0.29 5.49 -17.52 -0.10 0.19 16 3 Si 1.10 23.01 29.92 -169.99 -5.09 17.93 16 4 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.47 -12.85 9.48 30.87 0.29 -12.55 16 8 H 0.09 2.20 5.18 -52.49 -0.27 1.93 16 9 O -0.20 -5.35 9.15 0.35 0.00 -5.35 16 10 C 0.17 3.89 6.65 -38.97 -0.26 3.63 16 11 C -0.20 -4.17 9.97 -39.46 -0.39 -4.56 16 12 C -0.04 -0.63 9.57 -39.19 -0.37 -1.01 16 13 C -0.15 -2.59 5.87 -105.00 -0.62 -3.20 16 14 C 0.11 1.51 10.75 -14.68 -0.16 1.35 16 15 N -0.26 -3.57 10.61 32.15 0.34 -3.23 16 16 N -0.67 -7.13 5.82 -4.60 -0.03 -7.16 16 17 C 0.18 1.64 3.60 -67.59 -0.24 1.40 16 18 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.13 -0.86 5.87 -25.79 -0.15 -1.01 16 20 C -0.07 -0.44 7.51 38.12 0.29 -0.16 16 21 S -0.31 -2.91 23.22 -107.50 -2.50 -5.41 16 22 C -0.08 -0.75 7.14 37.52 0.27 -0.49 16 23 C -0.04 -0.76 9.78 -39.18 -0.38 -1.15 16 24 C -0.23 -4.91 9.15 -39.46 -0.36 -5.27 16 25 H 0.28 8.47 7.97 -40.82 -0.33 8.14 16 26 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 27 H 0.12 2.00 7.55 -52.48 -0.40 1.61 16 28 H 0.10 1.15 8.02 -52.49 -0.42 0.73 16 29 H 0.37 3.42 8.61 -182.60 -1.57 1.85 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.53 8.02 -51.93 -0.42 0.12 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.05 7.88 -51.93 -0.41 0.64 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.13 2.74 5.62 -52.49 -0.29 2.45 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -30.01 330.25 -9.58 -39.59 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.86 Total: 6.29 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -2.19 Total: -22.82 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 1.07 Total: -35.21 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: 0.00 Total: -5.35 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.09 Total: 17.93 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.50 Total: -5.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.01 -9.58 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808003736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.098 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds