Wall clock time and date at job start Tue Mar 31 2020 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86805 * 119.99780 * 2 1 4 4 H 1.48497 * 109.46893 * 90.00002 * 3 2 1 5 5 H 1.48500 * 109.47176 * 210.00040 * 3 2 1 6 6 H 1.48503 * 109.46966 * 330.00186 * 3 2 1 7 7 C 1.38619 * 120.00504 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00427 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.35667 * 116.99958 * 174.94864 * 9 7 2 11 11 C 1.39067 * 119.91522 * 185.28163 * 10 9 7 12 12 C 1.37731 * 120.08819 * 179.72324 * 11 10 9 13 13 C 1.39794 * 119.91018 * 0.56692 * 12 11 10 14 14 C 1.47397 * 120.08734 * 179.68303 * 13 12 11 15 15 N 1.29807 * 119.99483 * 0.02562 * 14 13 12 16 16 N 1.40100 * 119.99483 * 180.02562 * 15 14 13 17 17 C 1.46505 * 119.99945 * 180.02562 * 16 15 14 18 18 H 1.09000 * 108.85038 * 29.30020 * 17 16 15 19 19 C 1.52944 * 108.88881 * 147.87175 * 17 16 15 20 20 C 1.54832 * 109.12747 * 90.65345 * 19 17 16 21 21 S 1.83987 * 100.88002 * 41.43101 * 20 19 17 22 22 C 1.53704 * 108.88717 * 270.72076 * 17 16 15 23 23 C 1.39797 * 119.82834 * 359.70675 * 13 12 11 24 24 C 1.37735 * 119.91063 * 359.97438 * 23 13 12 25 25 H 0.97002 * 119.99906 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.95421 * 359.97438 * 11 10 9 27 27 H 1.08005 * 120.04361 * 180.29445 * 12 11 10 28 28 H 1.07999 * 119.99866 * 180.02562 * 14 13 12 29 29 H 0.96998 * 120.00174 * 359.97438 * 16 15 14 30 30 H 1.08998 * 109.60419 * 210.62143 * 19 17 16 31 31 H 1.08998 * 109.60545 * 330.76681 * 19 17 16 32 32 H 1.09000 * 111.11791 * 283.54142 * 20 19 17 33 33 H 1.08994 * 111.20705 * 159.36063 * 20 19 17 34 34 H 1.08992 * 110.34232 * 0.90427 * 22 17 16 35 35 H 1.08997 * 110.34224 * 123.04996 * 22 17 16 36 36 H 1.08005 * 120.04178 * 180.02562 * 23 13 12 37 37 H 1.08001 * 119.95292 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 1.4001 5 1 3.5473 1.4403 -0.7000 6 1 1.4471 2.6527 -0.7000 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2004 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0697 -3.5034 -0.1075 11 6 1.4321 -4.7337 -0.2245 12 6 2.1746 -5.8881 -0.3390 13 6 3.5709 -5.8230 -0.3257 14 6 4.3693 -7.0566 -0.4410 15 7 3.7758 -8.2053 -0.5556 16 7 4.5347 -9.3780 -0.6646 17 6 3.8650 -10.6745 -0.7946 18 1 2.9071 -10.5276 -1.2935 19 6 4.7333 -11.5966 -1.6519 20 6 5.6942 -12.3886 -0.7317 21 16 4.5711 -12.8093 0.6635 22 6 3.6123 -11.2469 0.6093 23 6 4.2082 -4.5848 -0.2021 24 6 3.4586 -3.4343 -0.0947 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3533 -4.7836 -0.2296 27 1 1.6786 -6.8427 -0.4346 28 1 5.4480 -7.0047 -0.4300 29 1 5.5035 -9.3314 -0.6548 30 1 4.0977 -12.2918 -2.2003 31 1 5.3134 -11.0013 -2.3571 32 1 6.5210 -11.7628 -0.3957 33 1 6.0611 -13.2882 -1.2258 34 1 3.9718 -10.5551 1.3709 35 1 2.5503 -11.4470 0.7514 36 1 5.2868 -4.5305 -0.1918 37 1 3.9502 -2.4774 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808003736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:45 Heat of formation + Delta-G solvation = 16.712110 kcal Electronic energy + Delta-G solvation = -19439.060120 eV Core-core repulsion = 16308.122717 eV Total energy + Delta-G solvation = -3130.937404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85376 -39.01892 -38.31225 -36.11512 -34.31262 -32.20521 -31.90920 -30.47734 -28.80648 -27.04506 -25.64590 -24.06661 -23.44293 -21.62968 -21.38626 -20.21611 -18.80260 -17.96604 -17.74847 -16.90436 -16.71395 -16.15219 -15.74710 -15.63547 -15.61689 -15.41618 -15.08583 -14.71579 -14.17706 -14.05479 -13.91024 -13.15918 -13.02009 -12.92517 -12.76701 -12.66249 -12.41529 -12.32760 -12.18084 -12.11506 -11.90153 -11.30194 -11.04486 -10.93676 -10.75969 -9.86859 -9.62380 -8.93539 -8.79794 -8.37307 -6.22543 0.16717 0.57677 0.83133 1.32204 1.51328 1.59194 1.75844 1.79698 1.92329 2.37093 2.92227 3.18538 3.33605 3.48370 3.71687 3.93067 3.94808 4.03002 4.12958 4.14790 4.17397 4.39411 4.53018 4.57356 4.65104 4.69516 4.80073 4.85626 4.96805 5.02450 5.08979 5.25213 5.36186 5.55561 5.69872 5.79576 6.01839 6.22056 6.28060 6.86560 7.53216 7.62344 8.51202 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.052422 B = 0.002269 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.998307 B =12335.180732 C =12591.841325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.046 4.046 3 Si 1.148 2.852 4 H -0.265 1.265 5 H -0.256 1.256 6 H -0.276 1.276 7 C -0.486 4.486 8 H 0.097 0.903 9 O -0.249 6.249 10 C 0.125 3.875 11 C -0.209 4.209 12 C -0.038 4.038 13 C -0.122 4.122 14 C 0.090 3.910 15 N -0.260 5.260 16 N -0.656 5.656 17 C 0.182 3.818 18 H 0.092 0.908 19 C -0.125 4.125 20 C -0.054 4.054 21 S -0.349 6.349 22 C -0.072 4.072 23 C -0.038 4.038 24 C -0.240 4.240 25 H 0.260 0.740 26 H 0.114 0.886 27 H 0.140 0.860 28 H 0.133 0.867 29 H 0.382 0.618 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.658 -21.945 -3.471 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.242 4.242 3 Si 0.964 3.036 4 H -0.190 1.190 5 H -0.180 1.180 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.115 0.885 9 O -0.156 6.156 10 C 0.074 3.926 11 C -0.228 4.228 12 C -0.058 4.058 13 C -0.125 4.125 14 C -0.121 4.121 15 N -0.067 5.067 16 N -0.395 5.395 17 C 0.074 3.926 18 H 0.110 0.890 19 C -0.165 4.165 20 C -0.201 4.201 21 S -0.125 6.125 22 C -0.222 4.222 23 C -0.059 4.059 24 C -0.260 4.260 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.221 0.779 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.174 0.826 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.158 -21.914 -2.809 25.715 hybrid contribution 0.810 -0.323 -0.301 0.922 sum 13.967 -22.237 -3.110 26.443 Atomic orbital electron populations 1.70692 1.07851 1.30148 1.46532 1.28414 0.96893 1.05031 0.93852 0.82539 0.73916 0.68658 0.78535 1.18969 1.17992 1.20066 1.22667 0.93910 0.82724 1.56840 0.88548 1.83627 1.37115 1.13309 1.81505 1.19950 0.91777 0.87140 0.93772 1.20364 0.99989 0.90423 1.12032 1.21038 0.93449 0.96571 0.94786 1.18243 0.92281 0.91672 1.10327 1.23737 0.97638 0.89237 1.01472 1.74141 1.27061 0.94398 1.11094 1.48138 1.05568 1.00708 1.85084 1.21227 0.97868 0.81109 0.92349 0.88997 1.22583 0.97775 0.98187 0.97961 1.24421 0.98148 1.04161 0.93385 1.88131 1.44186 1.29041 1.51108 1.24636 1.02439 0.94157 1.00927 1.21168 1.00415 0.89767 0.94512 1.21211 0.92746 1.00308 1.11705 0.93106 0.86815 0.84227 0.85008 0.77888 0.87745 0.87890 0.88457 0.85554 0.90030 0.87967 0.82586 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.10 13.70 21.61 0.30 -56.80 16 2 C -0.05 -2.59 5.49 84.82 0.47 -2.13 16 3 Si 1.15 47.24 29.92 68.60 2.05 49.29 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 6 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.49 -27.84 9.48 67.91 0.64 -27.20 16 8 H 0.10 5.07 5.18 -2.91 -0.02 5.06 16 9 O -0.25 -14.59 9.15 -21.67 -0.20 -14.79 16 10 C 0.12 6.08 6.65 22.67 0.15 6.23 16 11 C -0.21 -8.82 9.97 22.35 0.22 -8.60 16 12 C -0.04 -1.33 9.57 22.53 0.22 -1.11 16 13 C -0.12 -3.76 5.87 -20.11 -0.12 -3.88 16 14 C 0.09 2.13 10.75 87.41 0.94 3.07 16 15 N -0.26 -6.16 10.61 -52.21 -0.55 -6.72 16 16 N -0.66 -11.20 5.82 -168.47 -0.98 -12.18 16 17 C 0.18 2.62 3.60 45.21 0.16 2.78 16 18 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 19 C -0.13 -1.09 5.87 31.20 0.18 -0.91 16 20 C -0.05 -0.49 7.51 72.61 0.55 0.06 16 21 S -0.35 -5.92 23.22 -56.49 -1.31 -7.23 16 22 C -0.07 -1.20 7.14 72.22 0.52 -0.68 16 23 C -0.04 -1.22 9.78 22.53 0.22 -1.00 16 24 C -0.24 -10.00 9.15 22.35 0.20 -9.80 16 25 H 0.26 16.92 7.97 -92.71 -0.74 16.18 16 26 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 27 H 0.14 4.31 7.55 -2.91 -0.02 4.29 16 28 H 0.13 2.29 8.02 -2.91 -0.02 2.27 16 29 H 0.38 5.15 8.61 -213.32 -1.84 3.31 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.71 8.02 -2.39 -0.02 0.69 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.61 7.88 -2.39 -0.02 1.60 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.13 5.28 5.62 -2.91 -0.02 5.26 16 Total: -1.00 -70.76 330.25 2.94 -67.81 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.71 Total: 23.78 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 4.35 Total: -43.17 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.24 Total: -75.70 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.20 Total: -14.79 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.05 Total: 49.29 kcal Atomic # 16 Polarization: -5.92 SS G_CDS: -1.31 Total: -7.23 kcal Total: -70.76 2.94 -67.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808003736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.526 kcal (2) G-P(sol) polarization free energy of solvation -70.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds