Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41377 * 126.80144 * 2 1 4 4 C 1.35451 * 103.98546 * 180.09343 * 3 2 1 5 5 C 1.50700 * 126.77569 * 179.90743 * 4 3 2 6 6 N 1.46504 * 109.47060 * 89.71295 * 5 4 3 7 7 C 1.39923 * 120.00334 * 180.27242 * 6 5 4 8 8 C 1.38723 * 120.07488 * 359.45227 * 7 6 5 9 9 C 1.38217 * 120.01188 * 179.74609 * 8 7 6 10 10 C 1.38529 * 120.17410 * 0.54956 * 9 8 7 11 11 F 1.35106 * 119.91697 * 179.72582 * 10 9 8 12 12 C 1.38348 * 120.16484 * 359.70457 * 10 9 8 13 13 C 1.38727 * 119.98040 * 0.02562 * 12 10 9 14 14 O 1.35790 * 120.09112 * 179.97438 * 13 12 10 15 15 C 1.34804 * 116.99743 * 354.39797 * 14 13 12 16 16 H 1.08000 * 120.00078 * 5.06493 * 15 14 13 17 17 C 1.38627 * 119.99810 * 185.06426 * 15 14 13 18 18 N 1.31575 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99797 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47273 * 60.00156 * 19 17 15 21 21 H 1.48504 * 109.47168 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47399 * 299.99884 * 19 17 15 23 23 O 1.34037 * 106.44399 * 359.64946 * 4 3 2 24 24 N 1.20920 * 111.57228 * 0.23942 * 23 4 3 25 25 H 1.09002 * 109.47110 * 270.28557 * 1 2 3 26 26 H 1.09002 * 109.47251 * 30.29017 * 1 2 3 27 27 H 1.09007 * 109.47179 * 150.28865 * 1 2 3 28 28 H 1.08003 * 128.00344 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47153 * 329.71379 * 5 4 3 30 30 H 1.08996 * 109.47188 * 209.71259 * 5 4 3 31 31 H 0.97001 * 119.99676 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.99329 * 359.97438 * 8 7 6 33 33 H 1.08001 * 119.90637 * 180.27963 * 9 8 7 34 34 H 1.07993 * 120.01179 * 180.02562 * 12 10 9 35 35 H 0.97004 * 119.99727 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0021 5 6 4.9021 1.3696 -0.0050 6 7 5.3225 1.6234 1.3753 7 6 6.5058 2.3259 1.6284 8 6 7.2881 2.7729 0.5735 9 6 8.4540 3.4713 0.8250 10 6 8.8509 3.7171 2.1292 11 9 9.9945 4.3955 2.3691 12 6 8.0790 3.2701 3.1868 13 6 6.9047 2.5734 2.9420 14 8 6.1456 2.1332 3.9783 15 6 6.6455 2.3032 5.2186 16 1 7.5698 2.8440 5.3588 17 6 5.9733 1.7838 6.3140 18 7 4.8470 1.1254 6.1433 19 14 6.6657 2.0201 8.0328 20 1 6.7684 3.4714 8.3300 21 1 5.7653 1.3753 9.0222 22 1 8.0135 1.4019 8.1129 23 8 3.4537 -0.7253 0.0046 24 7 2.2868 -1.0423 0.0057 25 1 -0.3633 0.0051 1.0277 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3634 -0.8926 -0.5094 28 1 2.0708 2.1743 0.0004 29 1 4.7653 2.3185 -0.5235 30 1 5.6663 0.7835 -0.5156 31 1 4.7785 1.3076 2.1137 32 1 6.9841 2.5784 -0.4443 33 1 9.0594 3.8224 0.0024 34 1 8.3905 3.4635 4.2025 35 1 4.3765 0.7623 6.9099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811749995.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = 18.416750 kcal Electronic energy + Delta-G solvation = -22274.568071 eV Core-core repulsion = 18577.491410 eV Total energy + Delta-G solvation = -3697.076661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.09950 -44.91281 -39.26952 -36.80001 -35.26810 -34.75018 -32.37807 -31.99089 -29.32960 -28.74878 -28.35052 -25.53193 -25.43771 -23.09464 -21.96756 -21.16869 -20.10179 -18.23587 -17.89331 -17.55478 -17.15275 -16.17766 -15.80671 -15.18861 -14.92048 -14.61382 -14.44373 -14.22795 -14.09034 -13.66949 -13.46343 -13.37985 -13.17677 -13.12800 -13.00187 -12.30643 -12.09188 -11.95767 -11.49925 -11.42895 -11.14117 -10.85155 -10.62693 -10.46634 -10.02845 -9.67470 -9.47909 -9.38489 -8.89026 -7.80859 -6.57193 -6.51246 -4.07597 1.36766 2.04819 2.17261 2.18598 3.03744 3.11389 3.12558 3.15002 3.89639 4.02053 4.14951 4.35931 4.41361 4.91051 4.96375 5.04203 5.09443 5.22623 5.22746 5.35683 5.41718 5.51080 5.53039 5.69462 5.76985 5.77929 6.02586 6.05089 6.32565 6.50496 6.73620 6.95769 7.04245 7.19724 7.52086 7.83043 7.93932 8.23125 8.25469 8.94385 9.58782 10.65750 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.005067 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.864705 B = 5524.233223 C = 7766.916879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 C -0.211 4.211 4 C -0.037 4.037 5 C 0.215 3.785 6 N -0.744 5.744 7 C 0.150 3.850 8 C -0.143 4.143 9 C -0.197 4.197 10 C 0.091 3.909 11 F -0.157 7.157 12 C -0.241 4.241 13 C 0.125 3.875 14 O -0.175 6.175 15 C -0.388 4.388 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 O 0.107 5.893 24 N -0.363 5.363 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.173 0.827 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.412 0.588 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 1.388 -11.881 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.234 4.234 4 C -0.101 4.101 5 C 0.090 3.910 6 N -0.381 5.381 7 C 0.050 3.950 8 C -0.166 4.166 9 C -0.217 4.217 10 C 0.070 3.930 11 F -0.136 7.136 12 C -0.263 4.263 13 C 0.070 3.930 14 O -0.079 6.079 15 C -0.464 4.464 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.194 1.194 23 O 0.039 5.961 24 N -0.067 5.067 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.191 0.809 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.249 0.751 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.480 -0.170 -11.878 12.696 hybrid contribution 0.315 1.006 1.269 1.650 sum -4.165 0.836 -10.609 11.428 Atomic orbital electron populations 1.20158 0.85957 1.03533 1.03547 1.23616 0.99098 0.88864 1.03187 1.22499 0.91101 1.01285 1.08468 1.24456 0.98248 0.83829 1.03551 1.19474 0.88211 0.96794 0.86559 1.44228 1.24785 1.63827 1.05267 1.17003 0.89037 0.98495 0.90509 1.19936 0.96023 1.04107 0.96581 1.20288 0.99715 1.07383 0.94362 1.17253 0.84001 0.98046 0.93686 1.91387 1.48390 1.78302 1.95487 1.20793 0.97996 1.08120 0.99365 1.18569 0.90973 0.95884 0.87623 1.83893 1.40494 1.70360 1.13105 1.21249 1.08976 1.36542 0.79653 0.89056 1.25255 0.95828 0.95773 0.99488 1.70014 1.14657 1.33206 1.31801 0.85781 0.78774 0.78962 0.79977 1.19448 1.20297 1.19419 1.84839 1.21477 1.22746 1.67001 1.73849 0.89384 1.24230 1.19221 0.90034 0.90056 0.90688 0.80931 0.89442 0.90434 0.75106 0.86002 0.86395 0.84362 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.47 36.01 0.38 -0.31 16 2 C 0.01 0.14 7.33 -82.10 -0.60 -0.46 16 3 C -0.21 -2.62 11.06 -39.38 -0.44 -3.05 16 4 C -0.04 -0.50 6.86 -35.30 -0.24 -0.74 16 5 C 0.22 2.71 5.48 -5.19 -0.03 2.68 16 6 N -0.74 -12.80 5.72 -59.63 -0.34 -13.14 16 7 C 0.15 2.87 6.67 -83.52 -0.56 2.31 16 8 C -0.14 -2.33 9.31 -39.41 -0.37 -2.70 16 9 C -0.20 -3.36 10.02 -39.48 -0.40 -3.76 16 10 C 0.09 1.78 7.29 -39.43 -0.29 1.49 16 11 F -0.16 -3.00 17.26 2.25 0.04 -2.96 16 12 C -0.24 -5.25 9.14 -39.36 -0.36 -5.61 16 13 C 0.13 2.85 6.67 -38.93 -0.26 2.59 16 14 O -0.17 -4.64 9.00 0.00 0.00 -4.64 16 15 C -0.39 -10.46 9.49 30.88 0.29 -10.17 16 16 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 17 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 19 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 23 O 0.11 1.65 11.20 17.18 0.19 1.84 16 24 N -0.36 -5.64 12.07 33.42 0.40 -5.23 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.09 0.91 7.96 -51.93 -0.41 0.49 16 30 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 31 H 0.41 8.12 7.83 -40.82 -0.32 7.80 16 32 H 0.12 1.55 6.73 -52.49 -0.35 1.20 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.14 3.06 5.64 -52.49 -0.30 2.77 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -30.19 315.24 -5.50 -35.68 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.32 Total: 8.84 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.96 Total: -16.72 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.82 Total: -41.99 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: 0.19 Total: -2.80 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.19 -5.50 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811749995.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.100 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds