Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41377 * 126.80144 * 2 1 4 4 C 1.35451 * 103.98546 * 180.09343 * 3 2 1 5 5 C 1.50700 * 126.77569 * 179.90743 * 4 3 2 6 6 N 1.46504 * 109.47060 * 89.71295 * 5 4 3 7 7 C 1.39923 * 120.00334 * 180.27242 * 6 5 4 8 8 C 1.38723 * 120.07488 * 359.45227 * 7 6 5 9 9 C 1.38217 * 120.01188 * 179.74609 * 8 7 6 10 10 C 1.38529 * 120.17410 * 0.54956 * 9 8 7 11 11 F 1.35106 * 119.91697 * 179.72582 * 10 9 8 12 12 C 1.38348 * 120.16484 * 359.70457 * 10 9 8 13 13 C 1.38727 * 119.98040 * 0.02562 * 12 10 9 14 14 O 1.35790 * 120.09112 * 179.97438 * 13 12 10 15 15 C 1.34804 * 116.99743 * 354.39797 * 14 13 12 16 16 H 1.08000 * 120.00078 * 5.06493 * 15 14 13 17 17 C 1.38627 * 119.99810 * 185.06426 * 15 14 13 18 18 N 1.31575 * 120.00208 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99797 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47273 * 60.00156 * 19 17 15 21 21 H 1.48504 * 109.47168 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47399 * 299.99884 * 19 17 15 23 23 O 1.34037 * 106.44399 * 359.64946 * 4 3 2 24 24 N 1.20920 * 111.57228 * 0.23942 * 23 4 3 25 25 H 1.09002 * 109.47110 * 270.28557 * 1 2 3 26 26 H 1.09002 * 109.47251 * 30.29017 * 1 2 3 27 27 H 1.09007 * 109.47179 * 150.28865 * 1 2 3 28 28 H 1.08003 * 128.00344 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47153 * 329.71379 * 5 4 3 30 30 H 1.08996 * 109.47188 * 209.71259 * 5 4 3 31 31 H 0.97001 * 119.99676 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.99329 * 359.97438 * 8 7 6 33 33 H 1.08001 * 119.90637 * 180.27963 * 9 8 7 34 34 H 1.07993 * 120.01179 * 180.02562 * 12 10 9 35 35 H 0.97004 * 119.99727 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0021 5 6 4.9021 1.3696 -0.0050 6 7 5.3225 1.6234 1.3753 7 6 6.5058 2.3259 1.6284 8 6 7.2881 2.7729 0.5735 9 6 8.4540 3.4713 0.8250 10 6 8.8509 3.7171 2.1292 11 9 9.9945 4.3955 2.3691 12 6 8.0790 3.2701 3.1868 13 6 6.9047 2.5734 2.9420 14 8 6.1456 2.1332 3.9783 15 6 6.6455 2.3032 5.2186 16 1 7.5698 2.8440 5.3588 17 6 5.9733 1.7838 6.3140 18 7 4.8470 1.1254 6.1433 19 14 6.6657 2.0201 8.0328 20 1 6.7684 3.4714 8.3300 21 1 5.7653 1.3753 9.0222 22 1 8.0135 1.4019 8.1129 23 8 3.4537 -0.7253 0.0046 24 7 2.2868 -1.0423 0.0057 25 1 -0.3633 0.0051 1.0277 26 1 -0.3634 0.8874 -0.5183 27 1 -0.3634 -0.8926 -0.5094 28 1 2.0708 2.1743 0.0004 29 1 4.7653 2.3185 -0.5235 30 1 5.6663 0.7835 -0.5156 31 1 4.7785 1.3076 2.1137 32 1 6.9841 2.5784 -0.4443 33 1 9.0594 3.8224 0.0024 34 1 8.3905 3.4635 4.2025 35 1 4.3765 0.7623 6.9099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811749995.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = -0.637310 kcal Electronic energy + Delta-G solvation = -22275.394317 eV Core-core repulsion = 18577.491410 eV Total energy + Delta-G solvation = -3697.902907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.61544 -45.95573 -40.87598 -38.39513 -36.58786 -35.74138 -34.27420 -33.19758 -30.90617 -29.74038 -29.57529 -27.33119 -26.75786 -24.14084 -23.52171 -22.66420 -21.14614 -19.99860 -19.38037 -18.68964 -18.42683 -17.55812 -17.21636 -16.91650 -16.45151 -16.00504 -15.76657 -15.65281 -15.35095 -15.18245 -15.02506 -14.61140 -14.21951 -14.11469 -13.89556 -13.77574 -13.57085 -13.20030 -13.12624 -12.94175 -12.50160 -12.22380 -12.10848 -12.03170 -11.51951 -10.99672 -10.79832 -10.75239 -10.57099 -9.41337 -8.46903 -8.06436 -6.09503 0.31472 0.50876 0.63862 1.20341 1.34936 1.43859 1.49160 2.04397 2.16223 2.69466 2.79120 3.11532 3.25523 3.36352 3.40501 3.67521 3.99788 4.04168 4.14571 4.29025 4.36015 4.53125 4.53770 4.63628 4.67571 4.77508 4.88827 4.90055 5.04244 5.12302 5.22570 5.34450 5.46128 5.49262 5.95107 6.04680 6.48053 6.67938 6.99115 7.22124 7.75996 8.74636 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.005067 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.864705 B = 5524.233223 C = 7766.916879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 C -0.209 4.209 4 C -0.047 4.047 5 C 0.214 3.786 6 N -0.749 5.749 7 C 0.153 3.847 8 C -0.128 4.128 9 C -0.163 4.163 10 C 0.067 3.933 11 F -0.156 7.156 12 C -0.248 4.248 13 C 0.081 3.919 14 O -0.217 6.217 15 C -0.407 4.407 16 H 0.094 0.906 17 C -0.016 4.016 18 N -0.914 5.914 19 Si 1.009 2.991 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.262 1.262 23 O 0.082 5.918 24 N -0.397 5.397 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.199 0.801 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.396 0.604 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.120 0.880 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 2.679 -14.422 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.152 4.152 3 C -0.230 4.230 4 C -0.110 4.110 5 C 0.090 3.910 6 N -0.382 5.382 7 C 0.051 3.949 8 C -0.151 4.151 9 C -0.183 4.183 10 C 0.046 3.954 11 F -0.135 7.135 12 C -0.269 4.269 13 C 0.029 3.971 14 O -0.124 6.124 15 C -0.484 4.484 16 H 0.112 0.888 17 C -0.214 4.214 18 N -0.552 5.552 19 Si 0.829 3.171 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.186 1.186 23 O 0.018 5.982 24 N -0.104 5.104 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.216 0.784 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.230 0.770 32 H 0.190 0.810 33 H 0.177 0.823 34 H 0.138 0.862 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.959 1.145 -14.493 15.068 hybrid contribution 0.236 0.684 1.726 1.872 sum -3.723 1.829 -12.767 13.424 Atomic orbital electron populations 1.20341 0.83512 1.05197 1.04204 1.24311 1.00784 0.88586 1.01498 1.22910 0.90544 1.02330 1.07234 1.24729 0.99143 0.83370 1.03796 1.19841 0.88363 0.98602 0.84176 1.44450 1.23903 1.63030 1.06825 1.17318 0.89799 0.97945 0.89796 1.20487 0.94691 1.02021 0.97949 1.20841 0.99260 1.04112 0.94097 1.17391 0.84349 0.99383 0.94298 1.91386 1.48194 1.78322 1.95595 1.20847 0.98312 1.08169 0.99550 1.19098 0.91931 0.97580 0.88530 1.83862 1.42135 1.72934 1.13493 1.21617 1.09282 1.36784 0.80680 0.88849 1.26361 0.96126 0.95459 1.03469 1.70146 1.16560 1.35688 1.32819 0.84769 0.78204 0.79333 0.74748 1.18393 1.19652 1.18632 1.84792 1.21689 1.23866 1.67892 1.73848 0.89789 1.25687 1.21092 0.89743 0.87292 0.90166 0.78362 0.85910 0.88472 0.77025 0.80978 0.82261 0.86181 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.47 71.24 0.75 -0.52 16 2 C 0.01 0.17 7.33 43.58 0.32 0.49 16 3 C -0.21 -4.77 11.06 22.40 0.25 -4.52 16 4 C -0.05 -1.19 6.86 25.04 0.17 -1.02 16 5 C 0.21 4.73 5.48 85.63 0.47 5.20 16 6 N -0.75 -24.90 5.72 -342.57 -1.96 -26.86 16 7 C 0.15 5.63 6.67 38.27 0.26 5.88 16 8 C -0.13 -3.59 9.31 22.38 0.21 -3.38 16 9 C -0.16 -4.82 10.02 22.33 0.22 -4.60 16 10 C 0.07 2.50 7.29 22.37 0.16 2.66 16 11 F -0.16 -5.71 17.26 44.97 0.78 -4.93 16 12 C -0.25 -10.96 9.14 22.41 0.20 -10.75 16 13 C 0.08 3.79 6.67 22.69 0.15 3.94 16 14 O -0.22 -12.21 9.00 -22.92 -0.21 -12.41 16 15 C -0.41 -23.15 9.49 67.91 0.64 -22.51 16 16 H 0.09 5.02 5.21 -2.91 -0.02 5.00 16 17 C -0.02 -0.89 5.49 84.82 0.47 -0.43 16 18 N -0.91 -54.43 13.67 21.61 0.30 -54.13 16 19 Si 1.01 42.88 29.55 68.60 2.03 44.91 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 O 0.08 2.51 11.20 71.66 0.80 3.31 16 24 N -0.40 -12.32 12.07 -49.57 -0.60 -12.92 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.20 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.12 1.91 7.96 -2.39 -0.02 1.89 16 30 H 0.10 1.81 7.94 -2.39 -0.02 1.79 16 31 H 0.40 16.01 7.83 -92.71 -0.73 15.28 16 32 H 0.17 3.15 6.73 -2.91 -0.02 3.13 16 33 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.12 5.61 5.64 -2.91 -0.02 5.59 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.04 315.24 5.84 -65.20 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.43 Total: 27.40 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 4.27 Total: -29.56 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -2.26 Total: -93.92 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.60 Total: -9.10 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.78 Total: -4.93 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.04 5.84 -65.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811749995.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.567 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds