Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47077 * 84.81397 * 3 2 1 5 5 C 1.52998 * 109.47089 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47304 * 180.02562 * 5 4 3 7 7 O 1.21293 * 119.99883 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00175 * 179.97438 * 6 5 4 9 9 C 1.40092 * 120.00162 * 183.93146 * 8 6 5 10 10 C 1.38707 * 120.07188 * 334.49145 * 9 8 6 11 11 C 1.38196 * 120.01787 * 179.97438 * 10 9 8 12 12 C 1.38545 * 120.17699 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.92369 * 179.97438 * 12 11 10 14 14 C 1.38345 * 120.15545 * 0.02562 * 12 11 10 15 15 C 1.38741 * 119.97705 * 359.97379 * 14 12 11 16 16 O 1.35770 * 120.08805 * 180.30517 * 15 14 12 17 17 C 1.34804 * 117.00369 * 354.37083 * 16 15 14 18 18 H 1.08005 * 119.99714 * 354.64172 * 17 16 15 19 19 C 1.38635 * 120.00296 * 174.63377 * 17 16 15 20 20 N 1.31567 * 119.99804 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99983 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46982 * 90.00063 * 21 19 17 23 23 H 1.48496 * 109.47089 * 210.00145 * 21 19 17 24 24 H 1.48495 * 109.46805 * 330.00202 * 21 19 17 25 25 H 1.09000 * 109.47194 * 324.81608 * 3 2 1 26 26 H 1.08997 * 109.46833 * 204.81205 * 3 2 1 27 27 H 1.09000 * 109.46936 * 60.00053 * 4 3 2 28 28 H 1.08997 * 109.47133 * 299.99624 * 4 3 2 29 29 H 1.08996 * 109.47356 * 59.99379 * 5 4 3 30 30 H 1.09008 * 109.47113 * 299.99902 * 5 4 3 31 31 H 0.97004 * 119.99771 * 3.92254 * 8 6 5 32 32 H 1.08002 * 119.99165 * 359.97438 * 10 9 8 33 33 H 1.08000 * 119.91081 * 180.02562 * 11 10 9 34 34 H 1.07995 * 120.01723 * 180.02562 * 14 12 11 35 35 H 0.97008 * 120.00077 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1295 -1.4366 5 6 4.6480 -0.1295 -1.4365 6 6 5.1505 -0.2570 -2.8516 7 8 4.3623 -0.3403 -3.7698 8 7 6.4755 -0.2786 -3.0969 9 6 6.9431 -0.3141 -4.4170 10 6 6.1476 -0.8443 -5.4220 11 6 6.6098 -0.8783 -6.7240 12 6 7.8675 -0.3841 -7.0297 13 9 8.3143 -0.4204 -8.3041 14 6 8.6673 0.1453 -6.0328 15 6 8.2098 0.1827 -4.7235 16 8 8.9904 0.7074 -3.7444 17 6 10.2430 1.0683 -4.0877 18 1 10.6134 0.8558 -5.0797 19 6 11.0558 1.7122 -3.1675 20 7 12.2781 2.0648 -3.5028 21 14 10.4153 2.0793 -1.4515 22 1 10.7246 0.9380 -0.5531 23 1 11.0668 3.3085 -0.9324 24 1 8.9453 2.2829 -1.5050 25 1 2.9717 -0.8391 0.5921 26 1 2.9709 0.9336 0.4312 27 1 2.7543 0.7103 -2.0287 28 1 2.7552 -1.0625 -1.8678 29 1 5.0114 -0.9693 -0.8444 30 1 5.0114 0.8033 -1.0051 31 1 7.1055 -0.2694 -2.3593 32 1 5.1669 -1.2307 -5.1870 33 1 5.9888 -1.2911 -7.5052 34 1 9.6472 0.5303 -6.2736 35 1 12.8470 2.5151 -2.8589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813058774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = -81.570499 kcal Electronic energy + Delta-G solvation = -22045.192246 eV Core-core repulsion = 18343.779813 eV Total energy + Delta-G solvation = -3701.412433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.85161 -41.70463 -40.32342 -38.19793 -37.79961 -35.60698 -35.14477 -34.44177 -31.29828 -30.72455 -28.99885 -27.28943 -24.59562 -23.56629 -22.78575 -21.17717 -20.11925 -19.65764 -18.80564 -18.22183 -17.74247 -17.13163 -17.01829 -16.62418 -16.50602 -15.84369 -15.81840 -15.48188 -15.36923 -15.08611 -14.90199 -14.65883 -14.22602 -14.17306 -13.76484 -13.64597 -13.59013 -13.09094 -12.62339 -12.53810 -12.47878 -12.36261 -12.21078 -12.11222 -11.63640 -11.50470 -11.26747 -10.89347 -10.61232 -9.60957 -8.76939 -8.48061 -6.23571 0.16225 0.41280 1.40055 1.46161 1.59372 1.68293 1.82025 1.92038 2.20221 2.32276 2.65831 2.80424 3.03490 3.20607 3.39377 3.71676 3.95156 4.15051 4.22557 4.24530 4.30821 4.48287 4.65399 4.78989 4.84397 4.90195 4.98260 5.13982 5.19554 5.29198 5.33345 5.44026 5.50661 5.61481 5.84568 6.10242 6.56688 6.71292 6.83058 7.21795 7.44648 8.62843 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.004579 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.891717 B = 6113.535171 C = 8327.679078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.235 3.765 3 C -0.019 4.019 4 C -0.099 4.099 5 C -0.129 4.129 6 C 0.504 3.496 7 O -0.563 6.563 8 N -0.653 5.653 9 C 0.077 3.923 10 C -0.068 4.068 11 C -0.196 4.196 12 C 0.111 3.889 13 F -0.149 7.149 14 C -0.259 4.259 15 C 0.137 3.863 16 O -0.216 6.216 17 C -0.403 4.403 18 H 0.074 0.926 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.976 3.024 22 H -0.255 1.255 23 H -0.280 1.280 24 H -0.242 1.242 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.423 0.577 32 H 0.172 0.828 33 H 0.156 0.844 34 H 0.124 0.876 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 -5.279 9.156 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.081 4.081 3 C -0.058 4.058 4 C -0.138 4.138 5 C -0.168 4.168 6 C 0.295 3.705 7 O -0.443 6.443 8 N -0.298 5.298 9 C -0.019 4.019 10 C -0.088 4.088 11 C -0.215 4.215 12 C 0.091 3.909 13 F -0.128 7.128 14 C -0.280 4.280 15 C 0.084 3.916 16 O -0.122 6.122 17 C -0.479 4.479 18 H 0.092 0.908 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.796 3.204 22 H -0.179 1.179 23 H -0.205 1.205 24 H -0.165 1.165 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.260 0.740 32 H 0.189 0.811 33 H 0.174 0.826 34 H 0.141 0.859 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.720 -5.179 8.830 17.929 hybrid contribution 1.535 0.452 -0.317 1.631 sum -13.185 -4.727 8.513 16.391 Atomic orbital electron populations 1.81271 1.15742 1.11716 1.10845 1.30064 0.96149 0.90830 0.91038 1.19633 0.78351 1.09135 0.98693 1.21194 0.93649 1.03633 0.95355 1.21743 0.96257 1.08348 0.90452 1.21788 0.80466 0.74386 0.93823 1.90592 1.55783 1.50251 1.47648 1.43398 1.08684 1.71892 1.05800 1.17142 0.91912 1.05663 0.87179 1.21337 1.00573 0.96602 0.90257 1.21007 0.94712 1.07273 0.98556 1.17573 0.94133 1.01192 0.77966 1.91423 1.89826 1.94656 1.36878 1.20985 1.02916 1.11224 0.92828 1.18791 0.90775 0.94497 0.87508 1.83439 1.23963 1.71516 1.33312 1.20609 0.85858 1.39720 1.01718 0.90825 1.25452 0.94601 0.94581 1.04390 1.69759 1.08512 1.39714 1.38273 0.85143 0.80218 0.78451 0.76569 1.17934 1.20519 1.16473 0.83435 0.83973 0.92152 0.91388 0.84180 0.85311 0.74002 0.81063 0.82630 0.85859 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.17 18.54 20.01 0.37 -11.80 16 2 C 0.24 3.41 15.43 89.44 1.38 4.79 16 3 C -0.02 -0.06 5.70 28.79 0.16 0.10 16 4 C -0.10 -0.92 4.46 30.59 0.14 -0.78 16 5 C -0.13 -1.10 5.70 29.85 0.17 -0.93 16 6 C 0.50 10.90 7.72 87.66 0.68 11.58 16 7 O -0.56 -16.04 12.90 -3.07 -0.04 -16.08 16 8 N -0.65 -17.12 5.28 -303.04 -1.60 -18.72 16 9 C 0.08 2.66 6.47 38.23 0.25 2.90 16 10 C -0.07 -2.19 8.79 22.37 0.20 -1.99 16 11 C -0.20 -6.36 10.02 22.33 0.22 -6.14 16 12 C 0.11 4.24 7.29 22.37 0.16 4.41 16 13 F -0.15 -5.61 17.26 44.97 0.78 -4.83 16 14 C -0.26 -11.24 9.11 22.42 0.20 -11.03 16 15 C 0.14 5.74 6.66 22.69 0.15 5.89 16 16 O -0.22 -9.95 8.01 -22.70 -0.18 -10.13 16 17 C -0.40 -21.57 9.90 67.91 0.67 -20.89 16 18 H 0.07 4.31 5.52 -2.91 -0.02 4.29 16 19 C 0.01 0.46 5.49 84.83 0.47 0.92 16 20 N -0.92 -51.86 13.96 21.61 0.30 -51.56 16 21 Si 0.98 38.43 28.62 68.60 1.96 40.39 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 23 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 24 H -0.24 -8.70 7.11 99.48 0.71 -7.99 16 25 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 28 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 29 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.13 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.42 9.56 8.36 -92.71 -0.78 8.79 16 32 H 0.17 5.19 5.52 -2.91 -0.02 5.17 16 33 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.12 5.94 5.71 -2.91 -0.02 5.92 16 35 H 0.29 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -73.62 318.90 6.83 -66.79 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.39 Total: 17.10 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 4.85 Total: -11.17 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -0.93 Total: -82.08 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.22 Total: -26.20 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.78 Total: -4.83 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.96 Total: 40.39 kcal Total: -73.62 6.83 -66.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813058774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.777 kcal (2) G-P(sol) polarization free energy of solvation -73.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds