Wall clock time and date at job start Tue Mar 31 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.33634 * 122.74948 * 84.72641 * 4 2 1 6 6 S 1.76205 * 107.92327 * 179.97438 * 5 4 2 7 7 C 1.70977 * 90.28216 * 0.28303 * 6 5 4 8 8 C 1.50696 * 124.91994 * 179.84232 * 7 6 5 9 9 H 1.08999 * 109.47517 * 179.97438 * 8 7 6 10 10 C 1.47201 * 109.46683 * 299.99614 * 8 7 6 11 11 N 6.65430 * 91.33351 * 220.99478 * 2 1 3 12 12 C 1.50697 * 109.47327 * 59.99119 * 8 7 6 13 13 O 1.20765 * 119.99860 * 335.00124 * 12 8 7 14 14 C 1.50697 * 120.00359 * 155.00722 * 12 8 7 15 15 C 1.52998 * 109.47603 * 180.02562 * 14 12 8 16 16 C 1.50697 * 109.47121 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00390 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99637 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00287 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99689 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47138 * 119.99753 * 20 18 16 23 23 H 1.48502 * 109.47260 * 239.99774 * 20 18 16 24 24 N 1.29036 * 110.16749 * 359.83298 * 7 6 5 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.07995 * 126.03910 * 0.04797 * 5 4 2 33 33 H 1.09008 * 109.46732 * 300.00278 * 14 12 8 34 34 H 1.08999 * 109.47140 * 59.99674 * 14 12 8 35 35 H 1.08997 * 109.46688 * 299.99780 * 15 14 12 36 36 H 1.08999 * 109.47304 * 59.99573 * 15 14 12 37 37 H 0.96998 * 120.00654 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.1759 -0.0990 -2.4102 6 16 2.7836 -1.2836 -3.5644 7 6 2.7761 -2.4852 -2.3481 8 6 3.1953 -3.9186 -2.5490 9 1 3.0918 -4.4625 -1.6100 10 6 2.3408 -4.5406 -3.5735 11 7 1.6848 -5.0211 -4.3640 12 6 4.6328 -3.9633 -2.9991 13 8 5.1174 -3.0141 -3.5670 14 6 5.4655 -5.1925 -2.7407 15 6 6.8761 -4.9783 -3.2930 16 6 7.7089 -6.2073 -3.0339 17 1 7.2756 -7.0561 -2.5258 18 6 9.0242 -6.2481 -3.4457 19 7 9.5518 -5.2148 -4.0649 20 14 10.0567 -7.7712 -3.1240 21 1 9.2348 -8.7862 -2.4173 22 1 10.5299 -8.3304 -4.4158 23 1 11.2261 -7.4081 -2.2838 24 7 2.3598 -1.9868 -1.2330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.9591 0.9382 -2.6188 33 1 5.5197 -5.3755 -1.6674 34 1 5.0086 -6.0510 -3.2329 35 1 6.8221 -4.7951 -4.3661 36 1 7.3328 -4.1199 -2.8004 37 1 10.4771 -5.2433 -4.3543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813072562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:18 Heat of formation + Delta-G solvation = 20.238010 kcal Electronic energy + Delta-G solvation = -19929.044995 eV Core-core repulsion = 16798.260486 eV Total energy + Delta-G solvation = -3130.784509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48204 -39.45398 -36.83881 -35.45893 -33.63598 -32.46042 -31.08719 -28.91704 -27.37732 -26.12559 -24.94875 -22.32488 -21.50070 -19.80847 -19.60490 -18.48627 -17.47210 -16.54804 -16.02467 -15.63042 -15.16823 -14.77967 -14.59236 -14.49292 -14.11621 -14.00399 -13.50419 -13.25979 -12.99663 -12.87571 -12.45946 -12.40239 -12.27058 -12.14188 -12.04390 -11.43410 -11.39652 -11.24482 -11.00072 -10.94174 -10.65168 -10.10410 -10.00444 -9.83054 -9.61674 -9.24109 -9.04884 -8.83658 -8.40188 -6.03644 -4.08196 0.49920 1.23698 1.68009 1.89473 2.36758 2.48849 2.71246 3.29374 3.36809 3.39385 3.42348 3.93078 4.17561 4.42630 4.44978 4.65930 4.88280 4.98405 5.04391 5.11732 5.30896 5.32219 5.34124 5.50584 5.55076 5.59028 5.73911 5.95326 5.99066 6.03328 6.03804 6.09335 6.75489 7.21422 7.54335 7.56437 7.65190 7.69420 7.94825 8.31448 8.99086 9.56374 11.07283 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.003364 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.003302 B = 8321.301837 C = 8753.883279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C -0.146 4.146 4 C 0.072 3.928 5 C -0.266 4.266 6 S 0.198 5.802 7 C 0.035 3.965 8 C 0.033 3.967 9 H 0.167 0.833 10 C 0.217 3.783 11 N -0.393 5.393 12 C 0.365 3.635 13 O -0.416 6.416 14 C -0.154 4.154 15 C 0.030 3.970 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.454 5.454 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.178 0.822 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.478 11.405 7.309 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 C -0.204 4.204 4 C -0.062 4.062 5 C -0.406 4.406 6 S 0.455 5.545 7 C -0.243 4.243 8 C 0.007 3.993 9 H 0.184 0.816 10 C -0.103 4.103 11 N -0.068 5.068 12 C 0.234 3.766 13 O -0.284 6.284 14 C -0.191 4.191 15 C -0.007 4.007 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.169 5.169 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.195 0.805 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.778 10.929 5.071 21.476 hybrid contribution 0.575 -0.234 1.275 1.417 sum -17.204 10.695 6.346 21.228 Atomic orbital electron populations 1.21818 0.93838 1.02299 1.01943 1.19686 0.95750 0.94991 0.93771 1.21894 1.01650 0.94716 1.02123 1.20123 1.01485 0.88562 0.96015 1.27060 1.10793 1.05672 0.97054 1.84362 1.55852 1.00439 1.13840 1.25726 1.05495 0.99560 0.93500 1.17966 0.94043 0.89351 0.97929 0.81581 1.27740 0.94178 0.94442 0.93920 1.81148 1.08882 1.07670 1.09130 1.24857 0.86039 0.90475 0.75227 1.90443 1.71936 1.36499 1.29563 1.22286 0.99337 0.93691 1.03771 1.18992 0.87103 0.97625 0.96994 1.21209 0.96167 1.00927 1.38289 0.92321 1.25020 0.98010 0.96237 0.95070 1.69984 1.14052 1.29656 1.39103 0.86528 0.80333 0.83108 0.77977 1.19647 1.21011 1.20965 1.66003 1.13098 1.12355 1.25445 0.91929 0.92307 0.92612 0.89208 0.91810 0.92119 0.92411 0.80499 0.88458 0.88956 0.95792 0.95626 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 2 C -0.02 -0.18 3.33 -91.77 -0.31 -0.49 16 3 C -0.15 -1.04 8.70 37.16 0.32 -0.72 16 4 C 0.07 0.84 5.72 -84.22 -0.48 0.35 16 5 C -0.27 -2.89 10.36 29.12 0.30 -2.59 16 6 S 0.20 2.58 21.52 -107.50 -2.31 0.27 16 7 C 0.03 0.48 5.81 -13.45 -0.08 0.40 16 8 C 0.03 0.43 2.93 -95.71 -0.28 0.15 16 9 H 0.17 1.62 8.14 -51.93 -0.42 1.20 16 10 C 0.22 3.04 14.45 -20.83 -0.30 2.74 16 11 N -0.39 -6.15 18.52 42.08 0.78 -5.37 16 12 C 0.36 5.97 6.22 -29.04 -0.18 5.79 16 13 O -0.42 -8.04 14.62 6.00 0.09 -7.95 16 14 C -0.15 -2.75 5.57 -27.89 -0.16 -2.91 16 15 C 0.03 0.74 4.26 -27.89 -0.12 0.62 16 16 C -0.53 -14.27 9.11 -34.44 -0.31 -14.59 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.48 13.28 55.43 0.74 -25.74 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 N -0.45 -6.12 10.53 -8.05 -0.08 -6.20 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 6.94 -51.93 -0.36 0.00 16 32 H 0.18 1.42 6.99 -52.49 -0.37 1.05 16 33 H 0.10 1.53 8.14 -51.92 -0.42 1.10 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -32.17 339.89 -6.95 -39.13 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.91 Total: -4.94 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.35 Total: -10.42 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 1.43 Total: -37.31 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.31 Total: 0.27 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.17 -6.95 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813072562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.363 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds