Wall clock time and date at job start Tue Mar 31 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.33634 * 122.74948 * 84.72641 * 4 2 1 6 6 S 1.76205 * 107.92327 * 179.97438 * 5 4 2 7 7 C 1.70977 * 90.28216 * 0.28303 * 6 5 4 8 8 C 1.50696 * 124.91994 * 179.84232 * 7 6 5 9 9 H 1.08999 * 109.47517 * 179.97438 * 8 7 6 10 10 C 1.47201 * 109.46683 * 299.99614 * 8 7 6 11 11 N 6.65430 * 91.33351 * 220.99478 * 2 1 3 12 12 C 1.50697 * 109.47327 * 59.99119 * 8 7 6 13 13 O 1.20765 * 119.99860 * 335.00124 * 12 8 7 14 14 C 1.50697 * 120.00359 * 155.00722 * 12 8 7 15 15 C 1.52998 * 109.47603 * 180.02562 * 14 12 8 16 16 C 1.50697 * 109.47121 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00390 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99637 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00287 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99689 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47138 * 119.99753 * 20 18 16 23 23 H 1.48502 * 109.47260 * 239.99774 * 20 18 16 24 24 N 1.29036 * 110.16749 * 359.83298 * 7 6 5 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.07995 * 126.03910 * 0.04797 * 5 4 2 33 33 H 1.09008 * 109.46732 * 300.00278 * 14 12 8 34 34 H 1.08999 * 109.47140 * 59.99674 * 14 12 8 35 35 H 1.08997 * 109.46688 * 299.99780 * 15 14 12 36 36 H 1.08999 * 109.47304 * 59.99573 * 15 14 12 37 37 H 0.96998 * 120.00654 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.1759 -0.0990 -2.4102 6 16 2.7836 -1.2836 -3.5644 7 6 2.7761 -2.4852 -2.3481 8 6 3.1953 -3.9186 -2.5490 9 1 3.0918 -4.4625 -1.6100 10 6 2.3408 -4.5406 -3.5735 11 7 1.6848 -5.0211 -4.3640 12 6 4.6328 -3.9633 -2.9991 13 8 5.1174 -3.0141 -3.5670 14 6 5.4655 -5.1925 -2.7407 15 6 6.8761 -4.9783 -3.2930 16 6 7.7089 -6.2073 -3.0339 17 1 7.2756 -7.0561 -2.5258 18 6 9.0242 -6.2481 -3.4457 19 7 9.5518 -5.2148 -4.0649 20 14 10.0567 -7.7712 -3.1240 21 1 9.2348 -8.7862 -2.4173 22 1 10.5299 -8.3304 -4.4158 23 1 11.2261 -7.4081 -2.2838 24 7 2.3598 -1.9868 -1.2330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.9591 0.9382 -2.6188 33 1 5.5197 -5.3755 -1.6674 34 1 5.0086 -6.0510 -3.2329 35 1 6.8221 -4.7951 -4.3661 36 1 7.3328 -4.1199 -2.8004 37 1 10.4771 -5.2433 -4.3543 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813072562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:18 Heat of formation + Delta-G solvation = 1.279388 kcal Electronic energy + Delta-G solvation = -19929.867103 eV Core-core repulsion = 16798.260486 eV Total energy + Delta-G solvation = -3131.606617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54971 -40.66929 -38.02733 -36.24055 -35.59930 -33.65984 -32.82004 -29.90133 -28.07971 -27.74188 -26.00591 -23.98929 -22.46005 -21.23397 -20.58642 -19.47572 -18.83331 -18.20654 -17.10084 -17.01227 -16.44687 -16.12644 -15.92334 -15.62622 -15.36639 -14.87563 -14.47211 -14.46308 -14.28239 -14.10470 -13.87810 -13.66916 -13.29432 -13.10795 -13.04821 -12.85300 -12.83378 -12.46195 -12.09627 -12.04552 -11.90954 -11.70984 -11.63642 -11.28671 -10.94721 -10.79513 -10.55177 -10.28700 -9.80236 -8.16945 -6.29118 -0.47541 0.27019 0.60589 0.73603 1.27400 1.36545 1.44184 1.44787 1.57625 1.70738 2.29938 2.44773 2.85272 3.03347 3.17343 3.55483 3.99473 4.07222 4.10659 4.24848 4.28397 4.44450 4.48009 4.55993 4.59533 4.83718 4.95305 5.01376 5.09131 5.12303 5.25606 5.40478 5.41365 5.52690 5.64789 5.86376 6.08260 6.16279 6.32021 6.59258 6.90435 7.40982 8.95372 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.003364 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.003302 B = 8321.301837 C = 8753.883279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.020 4.020 3 C -0.144 4.144 4 C 0.056 3.944 5 C -0.247 4.247 6 S 0.161 5.839 7 C 0.018 3.982 8 C 0.049 3.951 9 H 0.206 0.794 10 C 0.235 3.765 11 N -0.421 5.421 12 C 0.373 3.627 13 O -0.451 6.451 14 C -0.147 4.147 15 C 0.033 3.967 16 C -0.540 4.540 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.253 1.253 22 H -0.284 1.284 23 H -0.281 1.281 24 N -0.460 5.460 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.207 0.793 33 H 0.129 0.871 34 H 0.112 0.888 35 H -0.014 1.014 36 H -0.008 1.008 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.836 11.036 9.132 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 C -0.201 4.201 4 C -0.077 4.077 5 C -0.386 4.386 6 S 0.417 5.583 7 C -0.259 4.259 8 C 0.023 3.977 9 H 0.223 0.777 10 C -0.085 4.085 11 N -0.096 5.096 12 C 0.244 3.756 13 O -0.322 6.322 14 C -0.184 4.184 15 C -0.004 4.004 16 C -0.577 4.577 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.177 1.177 22 H -0.210 1.210 23 H -0.207 1.207 24 N -0.175 5.175 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.223 0.777 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.004 0.996 36 H 0.010 0.990 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.167 10.546 6.916 22.944 hybrid contribution 0.976 -0.023 0.723 1.215 sum -18.191 10.522 7.639 22.361 Atomic orbital electron populations 1.21794 0.92693 1.01850 1.03128 1.19803 0.96606 0.95598 0.92138 1.21892 1.00945 0.93720 1.03558 1.20654 1.01509 0.88197 0.97318 1.27359 1.09126 1.06331 0.95804 1.84511 1.56622 1.01928 1.15234 1.25747 1.06783 0.99692 0.93721 1.17819 0.90966 0.89921 0.98953 0.77742 1.27787 0.93660 0.93609 0.93407 1.81167 1.09833 1.08835 1.09804 1.24819 0.87469 0.89168 0.74112 1.90450 1.73163 1.37532 1.31067 1.22142 0.95563 0.95256 1.05450 1.18801 0.91195 0.95832 0.94618 1.21747 0.96586 1.01890 1.37521 0.90559 1.26040 0.99782 0.99507 0.94906 1.70144 1.14484 1.32221 1.40735 0.85378 0.78486 0.79246 0.77804 1.17674 1.21025 1.20711 1.66019 1.12889 1.13355 1.25220 0.90052 0.93562 0.92138 0.89758 0.90078 0.93207 0.91351 0.77655 0.85366 0.87012 0.99584 0.98957 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 2 C -0.02 -0.32 3.33 -11.54 -0.04 -0.35 16 3 C -0.14 -1.69 8.70 71.98 0.63 -1.07 16 4 C 0.06 1.22 5.72 41.52 0.24 1.45 16 5 C -0.25 -4.98 10.36 66.77 0.69 -4.29 16 6 S 0.16 4.16 21.52 -56.49 -1.22 2.94 16 7 C 0.02 0.48 5.81 88.52 0.51 0.99 16 8 C 0.05 1.19 2.93 -14.09 -0.04 1.15 16 9 H 0.21 3.34 8.14 -2.39 -0.02 3.32 16 10 C 0.23 6.31 14.45 89.47 1.29 7.60 16 11 N -0.42 -12.83 18.52 19.98 0.37 -12.46 16 12 C 0.37 12.03 6.22 29.10 0.18 12.21 16 13 O -0.45 -17.94 14.62 -1.46 -0.02 -17.96 16 14 C -0.15 -5.12 5.57 29.85 0.17 -4.95 16 15 C 0.03 1.67 4.26 29.85 0.13 1.79 16 16 C -0.54 -29.14 9.11 25.60 0.23 -28.90 16 17 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.29 13.28 21.45 0.28 -57.01 16 20 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 21 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 N -0.46 -11.73 10.53 -179.40 -1.89 -13.62 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.66 6.94 -2.39 -0.02 0.64 16 32 H 0.21 2.77 6.99 -2.91 -0.02 2.75 16 33 H 0.13 3.68 8.14 -2.38 -0.02 3.66 16 34 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 35 H -0.01 -0.83 8.10 -2.39 -0.02 -0.84 16 36 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -71.80 339.89 5.75 -66.06 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.08 Total: 2.04 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.11 Total: -15.25 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.23 Total: -83.09 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.02 Total: -17.96 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.22 Total: 2.94 kcal Total: -71.80 5.75 -66.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813072562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.338 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds