Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 119.99780 * 2 1 4 4 H 1.48502 * 109.47453 * 269.99814 * 3 2 1 5 5 H 1.48504 * 109.47301 * 30.00065 * 3 2 1 6 6 H 1.48504 * 109.47146 * 149.99801 * 3 2 1 7 7 C 1.38644 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00425 * 180.02562 * 7 2 1 9 9 O 1.34839 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.35745 * 116.99807 * 174.86052 * 9 7 2 11 11 C 1.38961 * 120.02781 * 185.73970 * 10 9 7 12 12 C 1.38131 * 120.07010 * 180.02562 * 11 10 9 13 13 C 1.38203 * 120.14026 * 0.02562 * 12 11 10 14 14 C 1.38932 * 120.06384 * 0.02562 * 13 12 11 15 15 N 1.39888 * 120.03234 * 179.97438 * 14 13 12 16 16 C 1.34772 * 120.00214 * 40.98608 * 15 14 13 17 17 S 1.71202 * 119.99972 * 5.68477 * 16 15 14 18 18 N 1.34775 * 120.00211 * 185.68270 * 16 15 14 19 19 C 1.46505 * 120.00218 * 180.02562 * 18 16 15 20 20 C 1.53775 * 113.61267 * 254.13679 * 19 18 16 21 21 C 1.53952 * 87.02127 * 220.04631 * 20 19 18 22 22 C 1.53780 * 113.61551 * 156.52928 * 19 18 16 23 23 C 1.38720 * 120.03773 * 5.76242 * 10 9 7 24 24 H 0.96998 * 120.00334 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.96308 * 0.04876 * 11 10 9 26 26 H 1.07993 * 119.92664 * 179.97438 * 12 11 10 27 27 H 1.07993 * 119.96337 * 179.97438 * 13 12 11 28 28 H 0.97001 * 120.00028 * 220.98871 * 15 14 13 29 29 H 0.97000 * 120.00331 * 359.97438 * 18 16 15 30 30 H 1.08994 * 112.84883 * 25.33104 * 19 18 16 31 31 H 1.09001 * 113.61822 * 334.56663 * 20 19 18 32 32 H 1.09000 * 113.61477 * 105.46890 * 20 19 18 33 33 H 1.08999 * 113.54057 * 270.81614 * 21 20 19 34 34 H 1.08999 * 113.66984 * 139.93404 * 21 20 19 35 35 H 1.09004 * 113.61389 * 254.53400 * 22 19 18 36 36 H 1.09002 * 113.61395 * 25.34387 * 22 19 18 37 37 H 1.08004 * 120.07345 * 0.25905 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5044 -0.1073 11 6 1.4353 -4.7341 -0.2339 12 6 2.1826 -5.8907 -0.3431 13 6 3.5631 -5.8291 -0.3264 14 6 4.2036 -4.6028 -0.1989 15 7 5.6010 -4.5412 -0.1815 16 6 6.3200 -5.3114 -1.0217 17 16 5.5259 -6.2557 -2.2086 18 7 7.6642 -5.3383 -0.9278 19 6 8.4459 -6.1751 -1.8415 20 6 9.0176 -7.4406 -1.1810 21 6 10.3010 -7.1873 -1.9928 22 6 9.8988 -5.7033 -2.0185 23 6 3.4555 -3.4390 -0.0907 24 1 -0.4850 0.8400 0.0004 25 1 0.3566 -4.7856 -0.2473 26 1 1.6869 -6.8452 -0.4410 27 1 4.1446 -6.7351 -0.4115 28 1 6.0525 -3.9441 0.4354 29 1 8.1142 -4.8030 -0.2556 30 1 7.9318 -6.3683 -2.7830 31 1 9.1565 -7.3464 -0.1040 32 1 8.4948 -8.3546 -1.4630 33 1 10.2945 -7.6585 -2.9757 34 1 11.2171 -7.3818 -1.4351 35 1 10.0862 -5.2165 -2.9757 36 1 10.2785 -5.1318 -1.1716 37 1 3.9511 -2.4849 0.0122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814194345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = 45.610707 kcal Electronic energy + Delta-G solvation = -20132.020211 eV Core-core repulsion = 17002.335945 eV Total energy + Delta-G solvation = -3129.684266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12177 -39.28626 -37.90859 -36.04083 -33.80417 -32.22170 -29.50468 -28.56517 -26.08064 -25.56471 -25.26806 -23.77847 -21.98230 -21.38295 -20.12543 -18.60968 -18.26147 -17.52858 -16.79668 -15.70793 -15.56293 -15.26632 -15.04696 -14.71546 -14.13566 -14.05492 -13.59817 -13.27792 -13.01378 -12.89977 -12.73244 -12.32688 -11.72937 -11.61305 -11.47828 -11.13063 -11.02232 -10.98836 -10.79355 -10.77720 -10.75452 -10.47289 -9.59966 -9.50180 -8.83709 -8.02739 -7.57705 -7.49698 -6.62276 -6.44609 -4.04370 1.20489 1.97865 2.24623 2.48129 2.64662 3.09508 3.12119 3.15309 3.49691 3.94962 4.10391 4.22927 4.50116 4.52469 4.57566 5.07069 5.23143 5.28518 5.31028 5.34742 5.49030 5.57954 5.65648 5.69430 5.73176 5.94071 5.98637 6.13166 6.21497 6.42782 6.47385 6.72339 6.97673 7.01090 7.16268 7.32564 7.39842 7.45232 7.81043 7.98982 9.00610 9.71330 10.73586 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.003696 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.393167 B = 7573.254463 C = 8656.122492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.088 0.912 9 O -0.177 6.177 10 C 0.159 3.841 11 C -0.181 4.181 12 C -0.072 4.072 13 C -0.154 4.154 14 C 0.157 3.843 15 N -0.622 5.622 16 C 0.559 3.441 17 S -0.621 6.621 18 N -0.681 5.681 19 C 0.123 3.877 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.235 4.235 24 H 0.270 0.730 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.129 0.871 28 H 0.402 0.598 29 H 0.395 0.605 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.352 -9.844 0.724 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.105 0.895 9 O -0.081 6.081 10 C 0.105 3.895 11 C -0.201 4.201 12 C -0.092 4.092 13 C -0.176 4.176 14 C 0.065 3.935 15 N -0.245 5.245 16 C 0.201 3.799 17 S -0.493 6.493 18 N -0.310 5.310 19 C 0.018 3.982 20 C -0.187 4.187 21 C -0.175 4.175 22 C -0.187 4.187 23 C -0.257 4.257 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.147 0.853 28 H 0.239 0.761 29 H 0.231 0.769 30 H 0.160 0.840 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.391 -10.320 -0.127 21.089 hybrid contribution 1.448 2.064 1.203 2.794 sum 19.839 -8.256 1.075 21.515 Atomic orbital electron populations 1.70031 1.05879 1.27595 1.46233 1.25243 0.95819 0.98697 0.96662 0.85750 0.78784 0.80362 0.78697 1.19890 1.20222 1.19457 1.21220 0.91524 0.80960 1.53168 0.89476 1.84017 1.33765 1.11224 1.79119 1.18992 0.89149 0.88348 0.93012 1.20346 0.99866 0.90289 1.09573 1.20486 0.92845 0.97020 0.98800 1.20718 0.94479 0.96298 1.06129 1.17124 0.78242 0.94445 1.03705 1.42348 1.06626 1.39823 1.35693 1.22452 0.84657 0.85566 0.87178 1.93359 1.72368 1.50145 1.33471 1.45091 1.03135 1.46447 1.36317 1.23221 0.89489 0.90068 0.95408 1.23410 0.96494 0.98913 0.99884 1.22692 0.97839 0.95717 1.01237 1.23373 0.94741 0.97616 1.02989 1.20784 0.94121 0.96741 1.14055 0.92029 0.86237 0.86346 0.85337 0.76121 0.76866 0.83960 0.90081 0.90091 0.89389 0.90766 0.90308 0.89885 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.86 9.49 30.88 0.29 -10.57 16 8 H 0.09 2.22 5.20 -52.49 -0.27 1.95 16 9 O -0.18 -5.02 9.76 0.04 0.00 -5.02 16 10 C 0.16 3.81 6.64 -39.14 -0.26 3.55 16 11 C -0.18 -3.84 9.99 -39.35 -0.39 -4.24 16 12 C -0.07 -1.34 10.03 -39.63 -0.40 -1.74 16 13 C -0.15 -2.89 7.85 -39.34 -0.31 -3.20 16 14 C 0.16 2.90 5.93 -83.73 -0.50 2.41 16 15 N -0.62 -8.89 5.33 -11.42 -0.06 -8.95 16 16 C 0.56 7.90 7.74 -86.92 -0.67 7.22 16 17 S -0.62 -11.42 24.41 -107.50 -2.62 -14.04 16 18 N -0.68 -6.57 5.37 -54.73 -0.29 -6.86 16 19 C 0.12 1.10 3.99 -67.12 -0.27 0.83 16 20 C -0.15 -1.11 7.89 -25.83 -0.20 -1.32 16 21 C -0.14 -0.79 8.09 -25.83 -0.21 -1.00 16 22 C -0.15 -0.92 7.83 -25.92 -0.20 -1.13 16 23 C -0.24 -5.01 9.08 -39.21 -0.36 -5.36 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 26 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.13 2.36 6.18 -47.76 -0.29 2.07 16 28 H 0.40 4.35 8.84 -40.82 -0.36 3.98 16 29 H 0.40 2.60 8.73 -40.82 -0.36 2.24 16 30 H 0.14 1.63 6.64 -51.93 -0.34 1.29 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 37 H 0.13 2.67 5.64 -52.48 -0.30 2.38 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -33.63 323.93 -10.37 -44.01 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.44 Total: 8.66 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.57 Total: -13.54 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.40 Total: -40.29 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: 0.00 Total: -5.02 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -11.42 SS G_CDS: -2.62 Total: -14.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.63 -10.37 -44.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814194345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.620 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds