Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 119.99780 * 2 1 4 4 H 1.48502 * 109.47453 * 269.99814 * 3 2 1 5 5 H 1.48504 * 109.47301 * 30.00065 * 3 2 1 6 6 H 1.48504 * 109.47146 * 149.99801 * 3 2 1 7 7 C 1.38644 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00425 * 180.02562 * 7 2 1 9 9 O 1.34839 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.35745 * 116.99807 * 174.86052 * 9 7 2 11 11 C 1.38961 * 120.02781 * 185.73970 * 10 9 7 12 12 C 1.38131 * 120.07010 * 180.02562 * 11 10 9 13 13 C 1.38203 * 120.14026 * 0.02562 * 12 11 10 14 14 C 1.38932 * 120.06384 * 0.02562 * 13 12 11 15 15 N 1.39888 * 120.03234 * 179.97438 * 14 13 12 16 16 C 1.34772 * 120.00214 * 40.98608 * 15 14 13 17 17 S 1.71202 * 119.99972 * 5.68477 * 16 15 14 18 18 N 1.34775 * 120.00211 * 185.68270 * 16 15 14 19 19 C 1.46505 * 120.00218 * 180.02562 * 18 16 15 20 20 C 1.53775 * 113.61267 * 254.13679 * 19 18 16 21 21 C 1.53952 * 87.02127 * 220.04631 * 20 19 18 22 22 C 1.53780 * 113.61551 * 156.52928 * 19 18 16 23 23 C 1.38720 * 120.03773 * 5.76242 * 10 9 7 24 24 H 0.96998 * 120.00334 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.96308 * 0.04876 * 11 10 9 26 26 H 1.07993 * 119.92664 * 179.97438 * 12 11 10 27 27 H 1.07993 * 119.96337 * 179.97438 * 13 12 11 28 28 H 0.97001 * 120.00028 * 220.98871 * 15 14 13 29 29 H 0.97000 * 120.00331 * 359.97438 * 18 16 15 30 30 H 1.08994 * 112.84883 * 25.33104 * 19 18 16 31 31 H 1.09001 * 113.61822 * 334.56663 * 20 19 18 32 32 H 1.09000 * 113.61477 * 105.46890 * 20 19 18 33 33 H 1.08999 * 113.54057 * 270.81614 * 21 20 19 34 34 H 1.08999 * 113.66984 * 139.93404 * 21 20 19 35 35 H 1.09004 * 113.61389 * 254.53400 * 22 19 18 36 36 H 1.09002 * 113.61395 * 25.34387 * 22 19 18 37 37 H 1.08004 * 120.07345 * 0.25905 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5044 -0.1073 11 6 1.4353 -4.7341 -0.2339 12 6 2.1826 -5.8907 -0.3431 13 6 3.5631 -5.8291 -0.3264 14 6 4.2036 -4.6028 -0.1989 15 7 5.6010 -4.5412 -0.1815 16 6 6.3200 -5.3114 -1.0217 17 16 5.5259 -6.2557 -2.2086 18 7 7.6642 -5.3383 -0.9278 19 6 8.4459 -6.1751 -1.8415 20 6 9.0176 -7.4406 -1.1810 21 6 10.3010 -7.1873 -1.9928 22 6 9.8988 -5.7033 -2.0185 23 6 3.4555 -3.4390 -0.0907 24 1 -0.4850 0.8400 0.0004 25 1 0.3566 -4.7856 -0.2473 26 1 1.6869 -6.8452 -0.4410 27 1 4.1446 -6.7351 -0.4115 28 1 6.0525 -3.9441 0.4354 29 1 8.1142 -4.8030 -0.2556 30 1 7.9318 -6.3683 -2.7830 31 1 9.1565 -7.3464 -0.1040 32 1 8.4948 -8.3546 -1.4630 33 1 10.2945 -7.6585 -2.9757 34 1 11.2171 -7.3818 -1.4351 35 1 10.0862 -5.2165 -2.9757 36 1 10.2785 -5.1318 -1.1716 37 1 3.9511 -2.4849 0.0122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814194345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = 24.277989 kcal Electronic energy + Delta-G solvation = -20132.945267 eV Core-core repulsion = 17002.335945 eV Total energy + Delta-G solvation = -3130.609323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35153 -40.51835 -39.32529 -37.50668 -34.99989 -34.18063 -31.08937 -30.19045 -27.34153 -26.69046 -26.35444 -24.84331 -23.55068 -22.90595 -20.97446 -19.97249 -19.81122 -18.99140 -18.03186 -16.98994 -16.81923 -16.60749 -16.31184 -16.14173 -15.74413 -15.54760 -15.30231 -14.62056 -14.26158 -14.00166 -13.64364 -13.44169 -13.38871 -12.95021 -12.70864 -12.53755 -12.44209 -12.29851 -12.16439 -12.12142 -11.60272 -11.42403 -11.37092 -10.86515 -10.62073 -9.47727 -9.23920 -8.94275 -8.45283 -8.15378 -6.13419 -0.09342 0.61596 0.76500 0.92596 1.34580 1.42709 1.45640 1.51821 2.17571 2.47913 2.84401 3.15600 3.49781 3.53475 3.65152 3.92998 3.96077 4.08204 4.31890 4.38648 4.52851 4.56702 4.70036 4.73492 4.79892 5.01973 5.03381 5.06387 5.09557 5.10481 5.13676 5.26580 5.49054 5.62313 5.67743 5.70930 5.87048 6.02318 6.20859 6.32022 6.99040 7.79999 8.78036 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.003696 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.393167 B = 7573.254463 C = 8656.122492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.228 6.228 10 C 0.123 3.877 11 C -0.193 4.193 12 C -0.064 4.064 13 C -0.143 4.143 14 C 0.168 3.832 15 N -0.614 5.614 16 C 0.580 3.420 17 S -0.707 6.707 18 N -0.647 5.647 19 C 0.106 3.894 20 C -0.145 4.145 21 C -0.128 4.128 22 C -0.135 4.135 23 C -0.237 4.237 24 H 0.272 0.728 25 H 0.120 0.880 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.423 0.577 29 H 0.417 0.583 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.288 -10.107 1.443 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.488 4.488 8 H 0.119 0.881 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.213 4.213 12 C -0.083 4.083 13 C -0.165 4.165 14 C 0.075 3.925 15 N -0.239 5.239 16 C 0.218 3.782 17 S -0.580 6.580 18 N -0.275 5.275 19 C 0.001 3.999 20 C -0.184 4.184 21 C -0.166 4.166 22 C -0.173 4.173 23 C -0.259 4.259 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.170 0.830 27 H 0.157 0.843 28 H 0.263 0.737 29 H 0.257 0.743 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.441 -10.622 0.612 24.836 hybrid contribution 0.436 1.852 0.969 2.135 sum 22.878 -8.771 1.581 24.552 Atomic orbital electron populations 1.70184 1.08030 1.28748 1.48920 1.26554 0.96816 1.02682 0.95969 0.84618 0.77977 0.74752 0.79053 1.19260 1.19651 1.17274 1.21764 0.92400 0.81440 1.53214 0.88126 1.83985 1.35437 1.12361 1.81688 1.19492 0.90528 0.88121 0.94619 1.20558 1.00326 0.90383 1.09991 1.20852 0.92959 0.97479 0.97012 1.21014 0.94664 0.96747 1.04092 1.17026 0.80145 0.93392 1.01975 1.42021 1.05094 1.40489 1.36315 1.21927 0.85913 0.84471 0.85912 1.93587 1.73839 1.53437 1.37118 1.45152 1.01385 1.45097 1.35863 1.23452 0.90518 0.91485 0.94405 1.23411 0.97071 0.97189 1.00699 1.22676 0.97581 0.95195 1.01164 1.23371 0.91740 0.98186 1.04028 1.20790 0.93338 0.97709 1.14020 0.91882 0.86228 0.82973 0.84302 0.73654 0.74256 0.86627 0.88895 0.91611 0.89418 0.88927 0.90101 0.87751 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.27 13.67 21.61 0.30 -55.97 16 2 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 3 Si 1.02 42.06 29.55 68.60 2.03 44.09 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.41 -23.55 9.49 67.92 0.64 -22.91 16 8 H 0.10 5.20 5.20 -2.91 -0.02 5.18 16 9 O -0.23 -13.56 9.76 -22.78 -0.22 -13.78 16 10 C 0.12 6.10 6.64 22.56 0.15 6.25 16 11 C -0.19 -8.34 9.99 22.42 0.22 -8.11 16 12 C -0.06 -2.31 10.03 22.24 0.22 -2.09 16 13 C -0.14 -5.14 7.85 22.43 0.18 -4.97 16 14 C 0.17 5.98 5.93 38.15 0.23 6.21 16 15 N -0.61 -15.95 5.33 -190.04 -1.01 -16.96 16 16 C 0.58 15.02 7.74 179.06 1.39 16.41 16 17 S -0.71 -25.54 24.41 -56.49 -1.38 -26.92 16 18 N -0.65 -10.36 5.37 -327.08 -1.76 -12.11 16 19 C 0.11 1.62 3.99 45.51 0.18 1.80 16 20 C -0.14 -1.79 7.89 31.18 0.25 -1.54 16 21 C -0.13 -1.06 8.09 31.18 0.25 -0.80 16 22 C -0.13 -1.17 7.83 31.12 0.24 -0.92 16 23 C -0.24 -10.07 9.08 22.51 0.20 -9.86 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 26 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 27 H 0.14 4.84 6.18 -5.93 -0.04 4.80 16 28 H 0.42 7.68 8.84 -92.71 -0.82 6.86 16 29 H 0.42 3.55 8.73 -92.71 -0.81 2.74 16 30 H 0.12 2.55 6.64 -2.39 -0.02 2.53 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.52 8.11 -2.39 -0.02 0.50 16 37 H 0.13 5.32 5.64 -2.91 -0.02 5.31 16 Total: -1.00 -78.08 323.93 2.05 -76.03 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.53 Total: 26.95 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 4.62 Total: -21.33 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -2.47 Total: -85.04 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.22 Total: -13.78 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: -25.54 SS G_CDS: -1.38 Total: -26.92 kcal Total: -78.08 2.05 -76.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814194345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.309 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds