Wall clock time and date at job start Tue Mar 31 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 115.54882 * 2 1 4 4 O 1.45197 * 109.46981 * 325.57699 * 3 2 1 5 5 C 1.34236 * 116.99873 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99905 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00010 * 179.97438 * 5 4 3 8 8 C 1.53003 * 109.46878 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46838 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47119 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.53000 * 117.50205 * 214.32452 * 2 1 3 20 20 C 1.53002 * 117.49444 * 145.66322 * 2 1 3 21 21 F 1.39891 * 117.50050 * 0.02898 * 20 2 1 22 22 Cl 1.80304 * 117.49838 * 215.00155 * 20 2 1 23 23 H 1.09007 * 109.46976 * 34.41931 * 1 2 3 24 24 H 1.09003 * 109.47253 * 154.41965 * 1 2 3 25 25 H 1.08995 * 109.47695 * 274.41951 * 1 2 3 26 26 H 1.08999 * 109.46884 * 205.57692 * 3 2 1 27 27 H 1.09004 * 109.47450 * 85.58066 * 3 2 1 28 28 H 1.08998 * 109.46799 * 60.00757 * 7 5 4 29 29 H 1.09002 * 109.46835 * 300.00200 * 7 5 4 30 30 H 1.08998 * 109.46943 * 60.00655 * 8 7 5 31 31 H 1.08994 * 109.47116 * 300.00266 * 8 7 5 32 32 H 1.09004 * 109.46806 * 60.00265 * 9 8 7 33 33 H 1.09000 * 109.47828 * 300.00570 * 9 8 7 34 34 H 1.09004 * 109.47066 * 60.00422 * 10 9 8 35 35 H 1.08994 * 109.47405 * 300.00252 * 10 9 8 36 36 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 37 37 H 1.09004 * 117.49259 * 359.97438 * 19 2 1 38 38 H 1.09000 * 117.49789 * 144.99818 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 8 1.3797 2.3040 -0.7739 5 6 1.8225 3.5674 -0.8728 6 8 2.8531 3.8905 -0.3312 7 6 1.0348 4.5824 -1.6605 8 6 1.7534 5.9324 -1.6151 9 6 0.9540 6.9627 -2.4153 10 6 1.6728 8.3125 -2.3705 11 6 0.8851 9.3275 -3.1582 12 1 -0.0363 9.0388 -3.6420 13 6 1.3375 10.6264 -3.2559 14 7 2.4593 10.9780 -2.6664 15 14 0.3571 11.8863 -4.2259 16 1 -0.8576 11.2427 -4.7875 17 1 -0.0431 12.9997 -3.3283 18 1 1.1924 12.4184 -5.3324 19 6 2.2365 -1.1208 -0.7652 20 6 2.2363 -1.1207 0.7655 21 9 1.4338 -2.0672 1.4114 22 17 3.7828 -0.7136 1.5985 23 1 -0.3633 0.8478 -0.5809 24 1 -0.3634 -0.9270 -0.4437 25 1 -0.3634 0.0792 1.0245 26 1 3.1828 1.3084 -0.4437 27 1 2.2751 1.7424 1.0246 28 1 0.0397 4.6853 -1.2278 29 1 0.9486 4.2516 -2.6956 30 1 2.7483 5.8292 -2.0481 31 1 1.8400 6.2633 -0.5802 32 1 -0.0412 7.0660 -1.9827 33 1 0.8677 6.6316 -3.4502 34 1 2.6678 8.2089 -2.8033 35 1 1.7594 8.6439 -1.3357 36 1 2.7777 11.8917 -2.7355 37 1 1.6112 -1.8584 -1.2683 38 1 3.1714 -0.8747 -1.2687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821914151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:23 Heat of formation + Delta-G solvation = -156.606534 kcal Electronic energy + Delta-G solvation = -20321.844839 eV Core-core repulsion = 16718.286093 eV Total energy + Delta-G solvation = -3603.558746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.11438 -41.63027 -39.28646 -37.59575 -36.86809 -36.57147 -34.64813 -31.74805 -29.93326 -28.67800 -27.30133 -24.48787 -23.57019 -22.06596 -21.44487 -20.77789 -18.71692 -18.38081 -18.33280 -17.80514 -17.17248 -16.70972 -16.44179 -16.31498 -16.24387 -15.10323 -14.97995 -14.57119 -14.16627 -14.01983 -13.82147 -13.60055 -13.54477 -13.33777 -13.17420 -12.94239 -12.84994 -12.63395 -12.33474 -12.30155 -12.17701 -12.16324 -12.01055 -11.64083 -11.37224 -11.29212 -11.24083 -11.04456 -10.83349 -10.54255 -8.17925 -6.29368 0.33665 1.17894 1.36457 1.42098 1.42334 1.55884 2.06193 2.42956 2.67900 3.07914 3.15400 3.24734 3.58993 3.78011 4.00562 4.02482 4.11804 4.21377 4.38944 4.55256 4.59172 4.67039 4.69725 4.79448 4.81560 4.87105 4.88314 5.16966 5.19666 5.30390 5.34882 5.43579 5.58797 5.79965 5.90167 6.26875 6.71468 6.89784 7.40338 8.94464 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.045081 B = 0.002165 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.962039 B =12931.506695 C =13367.171150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.097 3.903 4 O -0.343 6.343 5 C 0.466 3.534 6 O -0.542 6.542 7 C -0.101 4.101 8 C -0.102 4.102 9 C -0.096 4.096 10 C 0.017 3.983 11 C -0.539 4.539 12 H 0.067 0.933 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.968 3.032 16 H -0.257 1.257 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.127 4.127 20 C 0.093 3.907 21 F -0.150 7.150 22 Cl -0.119 7.119 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.064 0.936 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.262 0.738 37 H 0.150 0.850 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -29.039 3.861 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.111 4.111 3 C 0.023 3.977 4 O -0.260 6.260 5 C 0.311 3.689 6 O -0.432 6.432 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.133 4.133 10 C -0.020 4.020 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.792 3.208 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.164 4.164 20 C 0.049 3.951 21 F -0.130 7.130 22 Cl -0.093 7.093 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.071 0.929 37 H 0.168 0.832 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.977 -28.854 4.161 29.423 hybrid contribution 0.449 0.885 0.370 1.059 sum -3.527 -27.969 4.531 28.553 Atomic orbital electron populations 1.21397 0.88061 1.04732 1.03457 1.22539 0.98482 0.89450 1.00668 1.22462 0.93321 0.85779 0.96149 1.86457 1.51975 1.20392 1.67130 1.24375 0.84177 0.82202 0.78148 1.90694 1.26110 1.80322 1.46027 1.21505 1.00168 0.89867 1.02232 1.21365 0.98937 0.93257 1.00414 1.21434 0.98615 0.93692 0.99588 1.19068 0.94886 0.93244 0.94780 1.21796 1.08542 0.95349 1.32016 0.91519 1.26075 0.96199 1.01202 0.96966 1.70134 1.23029 1.19075 1.45647 0.85356 0.78892 0.78381 0.78151 1.18059 1.20615 1.20562 1.24714 1.04543 0.99111 0.88078 1.24039 0.84792 0.94667 0.91584 1.92929 1.72047 1.64823 1.83177 1.98798 1.34466 1.93568 1.82429 0.89320 0.89802 0.91543 0.89972 0.90865 0.85095 0.84939 0.93123 0.93255 0.91810 0.91714 0.99516 0.99589 0.92902 0.83200 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.39 71.98 0.68 -0.67 16 2 C -0.11 -1.46 2.59 -52.18 -0.13 -1.59 16 3 C 0.10 1.76 4.64 71.98 0.33 2.10 16 4 O -0.34 -6.86 8.79 -51.48 -0.45 -7.31 16 5 C 0.47 11.75 7.96 71.24 0.57 12.31 16 6 O -0.54 -18.03 15.73 21.97 0.35 -17.68 16 7 C -0.10 -2.25 5.81 29.85 0.17 -2.07 16 8 C -0.10 -3.36 4.50 30.59 0.14 -3.22 16 9 C -0.10 -3.68 5.15 30.59 0.16 -3.52 16 10 C 0.02 0.92 4.97 29.85 0.15 1.07 16 11 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 12 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 13 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 14 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 15 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 16 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 C -0.13 -1.14 9.65 30.62 0.30 -0.84 16 20 C 0.09 1.33 4.33 30.62 0.13 1.47 16 21 F -0.15 -2.48 17.14 44.97 0.77 -1.70 16 22 Cl -0.12 -2.07 28.43 -2.72 -0.08 -2.15 16 23 H 0.09 1.04 6.87 -2.38 -0.02 1.02 16 24 H 0.08 0.67 7.90 -2.39 -0.02 0.65 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 1.50 7.89 -2.39 -0.02 1.48 16 27 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 28 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 35 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 36 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 37 H 0.15 0.66 8.05 -2.38 -0.02 0.64 16 38 H 0.14 0.97 8.05 -2.39 -0.02 0.95 16 Total: -1.00 -70.95 343.94 7.12 -63.83 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.04 Total: 2.07 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.18 Total: -25.28 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.11 Total: -24.99 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.77 Total: -1.70 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -70.95 7.12 -63.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821914151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.781 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds