Wall clock time and date at job start Tue Mar 31 2020 06:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 115.54838 * 2 1 4 4 O 1.45196 * 109.47070 * 34.42136 * 3 2 1 5 5 C 1.34234 * 116.99938 * 179.97438 * 4 3 2 6 6 O 1.20822 * 119.99973 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.52992 * 109.47257 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46630 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11 18 18 H 1.48492 * 109.47108 * 240.00016 * 15 13 11 19 19 C 1.52999 * 117.49906 * 145.67167 * 2 1 3 20 20 C 1.53005 * 117.49724 * 214.33229 * 2 1 3 21 21 F 1.39902 * 117.49972 * 0.02562 * 20 2 1 22 22 Cl 1.80299 * 117.49823 * 144.99665 * 20 2 1 23 23 H 1.09001 * 109.47247 * 85.58089 * 1 2 3 24 24 H 1.09008 * 109.46945 * 205.58443 * 1 2 3 25 25 H 1.09003 * 109.47163 * 325.57856 * 1 2 3 26 26 H 1.08996 * 109.47090 * 274.41768 * 3 2 1 27 27 H 1.08999 * 109.47084 * 154.41940 * 3 2 1 28 28 H 1.09004 * 109.46932 * 300.00373 * 7 5 4 29 29 H 1.08997 * 109.47392 * 59.99712 * 7 5 4 30 30 H 1.09004 * 109.47330 * 299.99977 * 8 7 5 31 31 H 1.09005 * 109.47124 * 59.99773 * 8 7 5 32 32 H 1.08999 * 109.46783 * 300.00124 * 9 8 7 33 33 H 1.09000 * 109.46608 * 60.00231 * 9 8 7 34 34 H 1.08988 * 109.47430 * 300.00270 * 10 9 8 35 35 H 1.08997 * 109.46441 * 60.00731 * 10 9 8 36 36 H 0.97000 * 119.99712 * 180.02562 * 14 13 11 37 37 H 1.09001 * 117.50048 * 215.00203 * 19 2 1 38 38 H 1.08999 * 117.50160 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3798 2.3040 0.7738 5 6 1.8231 3.5671 0.8737 6 8 2.8536 3.8903 0.3320 7 6 1.0348 4.5824 1.6604 8 6 1.7534 5.9323 1.6153 9 6 0.9527 6.9633 2.4135 10 6 1.6717 8.3131 2.3688 11 6 0.8827 9.3286 3.1545 12 1 -0.0390 9.0400 3.6377 13 6 1.3377 10.6262 3.2565 14 7 2.4599 10.9777 2.6676 15 14 0.3601 11.8848 4.2310 16 1 -0.8550 11.2414 4.7919 17 1 1.1970 12.4116 5.3389 18 1 -0.0383 13.0019 3.3374 19 6 2.2365 -1.1207 0.7653 20 6 2.2364 -1.1208 -0.7655 21 9 1.4339 -2.0668 -1.4122 22 17 3.7828 -0.7137 -1.5984 23 1 -0.3634 0.0792 -1.0246 24 1 -0.3633 -0.9270 0.4438 25 1 -0.3634 0.8477 0.5809 26 1 2.2751 1.7423 -1.0246 27 1 3.1828 1.3084 0.4437 28 1 0.0403 4.6858 1.2264 29 1 0.9469 4.2516 2.6952 30 1 2.7480 5.8292 2.0490 31 1 1.8409 6.2629 0.5803 32 1 -0.0418 7.0663 1.9793 33 1 0.8649 6.6328 3.4485 34 1 2.6659 8.2097 2.8032 35 1 1.7598 8.6436 1.3339 36 1 2.7801 11.8905 2.7397 37 1 3.1714 -0.8747 1.2689 38 1 1.6113 -1.8583 1.2685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821914152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:26 Heat of formation + Delta-G solvation = -140.211639 kcal Electronic energy + Delta-G solvation = -20321.095271 eV Core-core repulsion = 16718.247461 eV Total energy + Delta-G solvation = -3602.847810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.47422 -40.63095 -38.59198 -36.72090 -36.10157 -35.00739 -32.70726 -30.16333 -29.27553 -27.75433 -25.68555 -23.12294 -22.72956 -20.65707 -20.14572 -20.05461 -17.81594 -17.53549 -16.82531 -16.45218 -16.16764 -15.89103 -15.63376 -15.05551 -14.47563 -14.27972 -14.04580 -13.29345 -13.21758 -13.08000 -12.75621 -12.64877 -12.30443 -12.29661 -12.00982 -11.80524 -11.67921 -11.62153 -11.19112 -11.03842 -10.65597 -10.60499 -10.55724 -10.49287 -10.44465 -10.22724 -9.67535 -9.31012 -9.02627 -8.33434 -5.98013 -4.00571 0.93838 2.17995 2.22011 2.67094 3.31814 3.32698 3.39231 3.43036 3.62638 3.84806 4.20522 4.47042 4.65280 4.76769 4.93599 4.97241 5.04451 5.14669 5.22723 5.24070 5.32537 5.37640 5.37699 5.68436 5.76211 6.02482 6.15456 6.30890 6.44147 6.73955 6.92097 7.14000 7.70706 7.73204 7.85166 8.02807 8.44466 9.07285 9.63422 11.13355 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.045081 B = 0.002165 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.954581 B =12931.605327 C =13367.215347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.100 3.900 4 O -0.355 6.355 5 C 0.460 3.540 6 O -0.501 6.501 7 C -0.110 4.110 8 C -0.109 4.109 9 C -0.110 4.110 10 C 0.019 3.981 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.149 4.149 20 C 0.105 3.895 21 F -0.143 7.143 22 Cl -0.103 7.103 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.127 0.873 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -27.726 -5.364 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.107 4.107 3 C 0.026 3.974 4 O -0.273 6.273 5 C 0.303 3.697 6 O -0.388 6.388 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.018 4.018 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.187 4.187 20 C 0.061 3.939 21 F -0.123 7.123 22 Cl -0.076 7.076 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.903 -27.508 -5.668 28.150 hybrid contribution -0.209 0.512 0.147 0.572 sum -2.113 -26.996 -5.522 27.636 Atomic orbital electron populations 1.21374 0.88845 1.03955 1.03547 1.22558 0.97955 0.90479 0.99718 1.22357 0.93073 0.85024 0.96958 1.86474 1.52198 1.21257 1.67370 1.24271 0.84936 0.81485 0.78962 1.90694 1.24299 1.79555 1.44218 1.21621 1.00058 0.92715 1.00382 1.21591 0.99552 0.91268 1.02270 1.21649 0.98582 0.96487 0.98012 1.19102 0.95648 0.89761 0.97263 1.21308 1.07944 0.94582 1.32011 0.92634 1.25048 0.95106 0.98604 0.95848 1.69982 1.21033 1.18443 1.44005 0.86548 0.80139 0.81501 0.79881 1.19752 1.21046 1.21040 1.24518 1.04160 1.00258 0.89734 1.23824 0.85279 0.94353 0.90459 1.92948 1.71887 1.64649 1.82792 1.98800 1.33465 1.93439 1.81916 0.91121 0.91426 0.89116 0.89731 0.89965 0.87784 0.87777 0.91507 0.91505 0.93180 0.93189 0.96539 0.96539 0.93069 0.85526 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.39 37.16 0.35 -0.46 16 2 C -0.11 -0.80 2.59 -154.51 -0.40 -1.20 16 3 C 0.10 0.96 4.64 37.16 0.17 1.13 16 4 O -0.36 -3.87 8.79 -39.27 -0.35 -4.22 16 5 C 0.46 6.10 7.96 36.01 0.29 6.38 16 6 O -0.50 -8.29 15.73 -18.75 -0.29 -8.59 16 7 C -0.11 -1.37 5.81 -27.89 -0.16 -1.53 16 8 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 9 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 10 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 11 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 15 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.15 -0.86 9.65 -26.69 -0.26 -1.12 16 20 C 0.10 0.82 4.33 -26.69 -0.12 0.71 16 21 F -0.14 -1.27 17.15 2.25 0.04 -1.24 16 22 Cl -0.10 -0.91 28.43 -51.86 -1.47 -2.39 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.37 7.90 -51.92 -0.41 -0.04 16 25 H 0.09 0.64 6.87 -51.93 -0.36 0.28 16 26 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.18 8.10 -51.93 -0.42 0.75 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.45 8.14 -51.94 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.13 0.62 8.05 -51.93 -0.42 0.20 16 38 H 0.13 0.52 8.05 -51.93 -0.42 0.10 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -32.07 343.94 -7.89 -39.96 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -5.78 Total: -5.37 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -0.93 Total: -13.50 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.64 Total: -12.81 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.47 Total: -2.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.07 -7.89 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821914152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.251 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds