Wall clock time and date at job start Tue Mar 31 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 115.54838 * 2 1 4 4 O 1.45196 * 109.47070 * 34.42136 * 3 2 1 5 5 C 1.34234 * 116.99938 * 179.97438 * 4 3 2 6 6 O 1.20822 * 119.99973 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.52992 * 109.47257 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46630 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11 18 18 H 1.48492 * 109.47108 * 240.00016 * 15 13 11 19 19 C 1.52999 * 117.49906 * 145.67167 * 2 1 3 20 20 C 1.53005 * 117.49724 * 214.33229 * 2 1 3 21 21 F 1.39902 * 117.49972 * 0.02562 * 20 2 1 22 22 Cl 1.80299 * 117.49823 * 144.99665 * 20 2 1 23 23 H 1.09001 * 109.47247 * 85.58089 * 1 2 3 24 24 H 1.09008 * 109.46945 * 205.58443 * 1 2 3 25 25 H 1.09003 * 109.47163 * 325.57856 * 1 2 3 26 26 H 1.08996 * 109.47090 * 274.41768 * 3 2 1 27 27 H 1.08999 * 109.47084 * 154.41940 * 3 2 1 28 28 H 1.09004 * 109.46932 * 300.00373 * 7 5 4 29 29 H 1.08997 * 109.47392 * 59.99712 * 7 5 4 30 30 H 1.09004 * 109.47330 * 299.99977 * 8 7 5 31 31 H 1.09005 * 109.47124 * 59.99773 * 8 7 5 32 32 H 1.08999 * 109.46783 * 300.00124 * 9 8 7 33 33 H 1.09000 * 109.46608 * 60.00231 * 9 8 7 34 34 H 1.08988 * 109.47430 * 300.00270 * 10 9 8 35 35 H 1.08997 * 109.46441 * 60.00731 * 10 9 8 36 36 H 0.97000 * 119.99712 * 180.02562 * 14 13 11 37 37 H 1.09001 * 117.50048 * 215.00203 * 19 2 1 38 38 H 1.08999 * 117.50160 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3798 2.3040 0.7738 5 6 1.8231 3.5671 0.8737 6 8 2.8536 3.8903 0.3320 7 6 1.0348 4.5824 1.6604 8 6 1.7534 5.9323 1.6153 9 6 0.9527 6.9633 2.4135 10 6 1.6717 8.3131 2.3688 11 6 0.8827 9.3286 3.1545 12 1 -0.0390 9.0400 3.6377 13 6 1.3377 10.6262 3.2565 14 7 2.4599 10.9777 2.6676 15 14 0.3601 11.8848 4.2310 16 1 -0.8550 11.2414 4.7919 17 1 1.1970 12.4116 5.3389 18 1 -0.0383 13.0019 3.3374 19 6 2.2365 -1.1207 0.7653 20 6 2.2364 -1.1208 -0.7655 21 9 1.4339 -2.0668 -1.4122 22 17 3.7828 -0.7137 -1.5984 23 1 -0.3634 0.0792 -1.0246 24 1 -0.3633 -0.9270 0.4438 25 1 -0.3634 0.8477 0.5809 26 1 2.2751 1.7423 -1.0246 27 1 3.1828 1.3084 0.4437 28 1 0.0403 4.6858 1.2264 29 1 0.9469 4.2516 2.6952 30 1 2.7480 5.8292 2.0490 31 1 1.8409 6.2629 0.5803 32 1 -0.0418 7.0663 1.9793 33 1 0.8649 6.6328 3.4485 34 1 2.6659 8.2097 2.8032 35 1 1.7598 8.6436 1.3339 36 1 2.7801 11.8905 2.7397 37 1 3.1714 -0.8747 1.2689 38 1 1.6113 -1.8583 1.2685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821914152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:25 Heat of formation + Delta-G solvation = -156.606675 kcal Electronic energy + Delta-G solvation = -20321.806213 eV Core-core repulsion = 16718.247461 eV Total energy + Delta-G solvation = -3603.558752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.11189 -41.63066 -39.28669 -37.59588 -36.86806 -36.57125 -34.64818 -31.74844 -29.93326 -28.67800 -27.30140 -24.48771 -23.57047 -22.06628 -21.44469 -20.77780 -18.71697 -18.38093 -18.33239 -17.80529 -17.17256 -16.70965 -16.44182 -16.31478 -16.24335 -15.10332 -14.98011 -14.57131 -14.16599 -14.02045 -13.82107 -13.59984 -13.54508 -13.33797 -13.17452 -12.94236 -12.85013 -12.63361 -12.33485 -12.30157 -12.17683 -12.16288 -12.01101 -11.64084 -11.37241 -11.29221 -11.24109 -11.04457 -10.83343 -10.54269 -8.17905 -6.29368 0.33721 1.17898 1.36455 1.42119 1.42340 1.55891 2.06180 2.42949 2.67825 3.07898 3.15405 3.24763 3.58988 3.78024 4.00565 4.02484 4.11776 4.21418 4.38919 4.55267 4.59166 4.67054 4.69711 4.79450 4.81553 4.87098 4.88315 5.16961 5.19663 5.30378 5.34885 5.43575 5.58799 5.79995 5.90176 6.26904 6.71474 6.89807 7.40350 8.94476 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.045081 B = 0.002165 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.954581 B =12931.605327 C =13367.215347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.097 3.903 4 O -0.343 6.343 5 C 0.466 3.534 6 O -0.542 6.542 7 C -0.101 4.101 8 C -0.102 4.102 9 C -0.096 4.096 10 C 0.017 3.983 11 C -0.539 4.539 12 H 0.067 0.933 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.968 3.032 16 H -0.257 1.257 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.127 4.127 20 C 0.093 3.907 21 F -0.150 7.150 22 Cl -0.119 7.119 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.064 0.936 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.262 0.738 37 H 0.137 0.863 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -29.042 -3.855 29.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.111 4.111 3 C 0.023 3.977 4 O -0.260 6.260 5 C 0.311 3.689 6 O -0.432 6.432 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.133 4.133 10 C -0.020 4.020 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.792 3.208 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.164 4.164 20 C 0.049 3.951 21 F -0.130 7.130 22 Cl -0.093 7.093 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.071 0.929 37 H 0.155 0.845 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.973 -28.857 -4.155 29.424 hybrid contribution 0.453 0.883 -0.364 1.057 sum -3.520 -27.973 -4.519 28.554 Atomic orbital electron populations 1.21399 0.88060 1.04731 1.03455 1.22540 0.98483 0.89450 1.00675 1.22460 0.93321 0.85780 0.96149 1.86456 1.51941 1.20416 1.67140 1.24373 0.84181 0.82201 0.78144 1.90694 1.26126 1.80315 1.46019 1.21502 1.00155 0.89861 1.02255 1.21367 0.98931 0.93254 1.00424 1.21437 0.98609 0.93686 0.99597 1.19067 0.94883 0.93241 0.94784 1.21795 1.08441 0.95400 1.32070 0.91518 1.26075 0.96180 1.01193 0.96985 1.70132 1.22979 1.19135 1.45640 0.85356 0.78890 0.78383 0.78156 1.18059 1.20573 1.20604 1.24712 1.04544 0.99109 0.88068 1.24041 0.84785 0.94677 0.91579 1.92932 1.72051 1.64868 1.83129 1.98798 1.34473 1.93569 1.82424 0.91543 0.89802 0.89322 0.90866 0.89973 0.85099 0.84936 0.93120 0.93261 0.91804 0.91720 0.99514 0.99590 0.92900 0.84468 0.83199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.39 71.98 0.68 -0.67 16 2 C -0.11 -1.46 2.59 -52.18 -0.13 -1.60 16 3 C 0.10 1.76 4.64 71.98 0.33 2.10 16 4 O -0.34 -6.86 8.79 -51.46 -0.45 -7.31 16 5 C 0.47 11.75 7.96 71.24 0.57 12.32 16 6 O -0.54 -18.03 15.73 21.98 0.35 -17.68 16 7 C -0.10 -2.25 5.81 29.85 0.17 -2.07 16 8 C -0.10 -3.36 4.50 30.59 0.14 -3.22 16 9 C -0.10 -3.68 5.15 30.60 0.16 -3.52 16 10 C 0.02 0.92 4.97 29.85 0.15 1.07 16 11 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 12 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 13 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 14 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 15 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 16 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 C -0.13 -1.13 9.65 30.62 0.30 -0.84 16 20 C 0.09 1.33 4.33 30.62 0.13 1.47 16 21 F -0.15 -2.48 17.15 44.97 0.77 -1.71 16 22 Cl -0.12 -2.07 28.43 -2.72 -0.08 -2.15 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.08 0.67 7.90 -2.38 -0.02 0.65 16 25 H 0.09 1.04 6.87 -2.39 -0.02 1.02 16 26 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 27 H 0.08 1.50 7.89 -2.39 -0.02 1.48 16 28 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 1.81 8.10 -2.38 -0.02 1.79 16 31 H 0.05 1.77 8.10 -2.38 -0.02 1.75 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 34 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.14 0.97 8.05 -2.39 -0.02 0.95 16 38 H 0.15 0.66 8.05 -2.39 -0.02 0.64 16 Total: -1.00 -70.95 343.94 7.12 -63.83 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.04 Total: 2.06 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.18 Total: -25.28 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.11 Total: -24.99 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.77 Total: -1.71 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -70.95 7.12 -63.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821914152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.781 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds