Wall clock time and date at job start Tue Mar 31 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 115.55109 * 2 1 4 4 O 1.45192 * 109.47109 * 34.32989 * 3 2 1 5 5 C 1.34230 * 117.00018 * 180.02562 * 4 3 2 6 6 O 1.20826 * 120.00015 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00046 * 180.02562 * 5 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00129 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99861 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00050 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00180 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47117 * 90.00278 * 15 13 11 17 17 H 1.48501 * 109.47010 * 210.00349 * 15 13 11 18 18 H 1.48506 * 109.47147 * 329.99935 * 15 13 11 19 19 C 1.53007 * 117.51818 * 145.69892 * 2 1 3 20 20 C 1.52999 * 60.00021 * 107.48083 * 19 2 1 21 21 F 1.39906 * 117.50055 * 107.48775 * 20 19 2 22 22 Cl 1.80302 * 117.49958 * 252.51361 * 20 19 2 23 23 H 1.08995 * 109.47203 * 85.58346 * 1 2 3 24 24 H 1.09007 * 109.47253 * 205.58659 * 1 2 3 25 25 H 1.09000 * 109.47094 * 325.58367 * 1 2 3 26 26 H 1.09001 * 109.46829 * 274.32555 * 3 2 1 27 27 H 1.08998 * 109.47230 * 154.33291 * 3 2 1 28 28 H 1.09002 * 109.47060 * 299.99765 * 7 5 4 29 29 H 1.09001 * 109.47380 * 59.99853 * 7 5 4 30 30 H 1.09002 * 109.47153 * 299.99998 * 8 7 5 31 31 H 1.08998 * 109.47533 * 59.99628 * 8 7 5 32 32 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 33 33 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 34 34 H 1.09002 * 109.47153 * 300.00216 * 10 9 8 35 35 H 1.09001 * 109.47289 * 60.00300 * 10 9 8 36 36 H 0.97000 * 120.00500 * 180.02562 * 14 13 11 37 37 H 1.08999 * 117.50251 * 214.96762 * 19 2 1 38 38 H 1.09004 * 117.49761 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3787 2.3046 0.7720 5 6 1.8214 3.5679 0.8707 6 8 2.8528 3.8907 0.3304 7 6 1.0326 4.5835 1.6565 8 6 1.7512 5.9335 1.6113 9 6 0.9501 6.9647 2.4085 10 6 1.6690 8.3145 2.3638 11 6 0.8802 9.3300 3.1496 12 1 -0.0419 9.0417 3.6323 13 6 1.3352 10.6276 3.2514 14 7 0.6471 11.5138 3.9376 15 14 2.9297 11.1266 2.4160 16 1 2.6399 11.5994 1.0385 17 1 3.5728 12.2191 3.1893 18 1 3.8440 9.9579 2.3562 19 6 2.2369 -1.1210 0.7647 20 6 2.2364 -1.1208 -0.7653 21 9 3.4364 -0.8049 -1.4116 22 17 1.2021 -2.3408 -1.5976 23 1 -0.3633 0.0791 -1.0246 24 1 -0.3634 -0.9269 0.4438 25 1 -0.3633 0.8478 0.5808 26 1 2.2766 1.7416 -1.0248 27 1 3.1822 1.3087 0.4451 28 1 0.0381 4.6861 1.2224 29 1 0.9448 4.2536 2.6917 30 1 2.7455 5.8305 2.0457 31 1 1.8394 6.2637 0.5763 32 1 -0.0442 7.0675 1.9737 33 1 0.8616 6.6347 3.4436 34 1 2.6631 8.2113 2.7989 35 1 1.7578 8.6447 1.3288 36 1 0.9669 12.4268 4.0090 37 1 3.1721 -0.8751 1.2677 38 1 1.6119 -1.8585 1.2683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821914153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:27 Heat of formation + Delta-G solvation = -153.850190 kcal Electronic energy + Delta-G solvation = -20362.136239 eV Core-core repulsion = 16758.697017 eV Total energy + Delta-G solvation = -3603.439222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.14601 -41.63889 -39.27595 -37.65345 -36.83043 -36.59481 -34.63775 -32.09489 -29.93578 -28.76049 -27.43377 -24.20264 -23.55871 -21.95241 -21.49231 -20.78491 -18.90437 -18.61239 -18.35734 -17.81807 -17.24020 -16.65461 -16.34599 -16.28826 -16.25144 -15.14473 -14.93839 -14.70201 -14.24148 -14.17167 -13.93136 -13.76394 -13.72887 -13.45660 -13.21419 -12.86990 -12.67970 -12.53869 -12.34517 -12.29087 -12.11854 -12.03023 -11.75300 -11.72354 -11.38855 -11.33752 -11.24782 -11.21540 -10.84469 -10.74782 -8.28312 -6.31330 0.32190 1.15965 1.35981 1.37504 1.43221 1.49790 2.07652 2.36817 2.61198 3.07194 3.07329 3.26083 3.61920 3.78114 3.96138 3.99053 4.11205 4.18442 4.37914 4.54436 4.56520 4.62853 4.70657 4.76581 4.82321 4.84049 4.91476 5.11281 5.17078 5.20221 5.28417 5.40413 5.61365 5.66479 5.69866 6.30909 6.69105 6.77229 7.33415 8.88172 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.046790 B = 0.002196 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.278161 B =12745.531782 C =13114.677873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.110 4.110 3 C 0.096 3.904 4 O -0.342 6.342 5 C 0.467 3.533 6 O -0.542 6.542 7 C -0.104 4.104 8 C -0.103 4.103 9 C -0.094 4.094 10 C -0.018 4.018 11 C -0.529 4.529 12 H 0.038 0.962 13 C 0.002 3.998 14 N -0.951 5.951 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.250 1.250 19 C -0.129 4.129 20 C 0.090 3.910 21 F -0.161 7.161 22 Cl -0.102 7.102 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.265 0.735 37 H 0.133 0.867 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -31.666 -8.570 32.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.111 4.111 3 C 0.022 3.978 4 O -0.259 6.259 5 C 0.312 3.688 6 O -0.431 6.431 7 C -0.141 4.141 8 C -0.141 4.141 9 C -0.132 4.132 10 C -0.055 4.055 11 C -0.567 4.567 12 H 0.056 0.944 13 C -0.195 4.195 14 N -0.592 5.592 15 Si 0.772 3.228 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.174 1.174 19 C -0.166 4.166 20 C 0.047 3.953 21 F -0.142 7.142 22 Cl -0.075 7.075 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.336 -31.532 -8.788 32.761 hybrid contribution 0.934 0.753 -0.638 1.359 sum 2.270 -30.778 -9.426 32.269 Atomic orbital electron populations 1.21419 0.87790 1.04677 1.03530 1.22549 0.98830 0.89033 1.00693 1.22394 0.93276 0.86052 0.96110 1.86470 1.51857 1.20422 1.67141 1.24363 0.84179 0.82184 0.78072 1.90685 1.26021 1.80345 1.46069 1.21511 1.00225 0.90168 1.02164 1.21399 0.99031 0.92860 1.00810 1.21323 0.98658 0.93461 0.99716 1.19586 0.96048 0.94265 0.95646 1.21553 1.08443 0.94895 1.31852 0.94409 1.26013 1.00934 0.96734 0.95802 1.70063 1.41353 1.04301 1.43477 0.85690 0.79963 0.78467 0.78720 1.19317 1.20953 1.17381 1.24690 1.04630 0.99098 0.88207 1.24118 0.82541 0.97089 0.91589 1.92930 1.45369 1.92552 1.83303 1.98778 1.68260 1.58315 1.82144 0.91317 0.89629 0.89616 0.90973 0.90241 0.85283 0.85187 0.92321 0.92359 0.92144 0.92105 0.96628 0.96785 0.92574 0.84885 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.79 71.98 0.63 -0.58 16 2 C -0.11 -1.37 2.59 -52.18 -0.14 -1.51 16 3 C 0.10 1.66 5.23 71.98 0.38 2.04 16 4 O -0.34 -6.49 8.79 -51.41 -0.45 -6.94 16 5 C 0.47 10.95 7.96 71.24 0.57 11.52 16 6 O -0.54 -16.72 15.73 21.97 0.35 -16.37 16 7 C -0.10 -2.14 5.81 29.85 0.17 -1.96 16 8 C -0.10 -3.01 4.50 30.59 0.14 -2.88 16 9 C -0.09 -3.37 5.15 30.59 0.16 -3.22 16 10 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 11 C -0.53 -30.52 9.66 25.60 0.25 -30.27 16 12 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 13 C 0.00 0.10 5.47 84.65 0.46 0.56 16 14 N -0.95 -59.98 13.96 21.45 0.30 -59.69 16 15 Si 0.95 45.16 27.47 68.60 1.88 47.04 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 19 C -0.13 -1.08 9.65 30.60 0.30 -0.79 16 20 C 0.09 1.24 4.33 30.60 0.13 1.37 16 21 F -0.16 -2.97 17.14 44.97 0.77 -2.20 16 22 Cl -0.10 -1.37 28.43 -2.72 -0.08 -1.45 16 23 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.08 0.61 7.90 -2.38 -0.02 0.59 16 25 H 0.09 0.95 6.87 -2.39 -0.02 0.94 16 26 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 27 H 0.08 1.39 7.89 -2.39 -0.02 1.37 16 28 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 35 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.13 0.90 8.05 -2.39 -0.02 0.88 16 38 H 0.15 0.59 8.05 -2.39 -0.02 0.57 16 Total: -1.00 -70.70 340.34 6.93 -63.77 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.99 Total: 2.27 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 3.17 Total: -26.43 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.30 Total: -59.69 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.11 Total: -23.31 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.77 Total: -2.20 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -70.70 6.93 -63.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821914153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.079 kcal (2) G-P(sol) polarization free energy of solvation -70.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds