Wall clock time and date at job start Tue Mar 31 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48499 * 109.47072 * 274.98376 * 3 2 1 5 5 H 1.48507 * 109.47235 * 34.98106 * 3 2 1 6 6 H 1.48500 * 109.47217 * 154.98363 * 3 2 1 7 7 C 1.37875 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99622 * 189.26856 * 7 2 1 9 9 C 1.50701 * 119.99882 * 9.27457 * 7 2 1 10 10 H 1.08998 * 109.49390 * 305.47113 * 9 7 2 11 11 C 1.53041 * 109.49533 * 185.40922 * 9 7 2 12 12 C 1.53039 * 109.53715 * 178.68019 * 11 9 7 13 13 C 1.53198 * 109.30836 * 61.37081 * 12 11 9 14 14 N 1.46927 * 108.89037 * 305.28819 * 13 12 11 15 15 C 1.34774 * 120.63205 * 233.67862 * 14 13 12 16 16 O 1.21611 * 120.00031 * 175.60383 * 15 14 13 17 17 C 1.47390 * 119.99822 * 355.60071 * 15 14 13 18 18 C 1.39967 * 120.61424 * 321.12520 * 17 15 14 19 19 C 1.38333 * 118.37546 * 179.97438 * 18 17 15 20 20 C 1.38406 * 119.52136 * 0.02562 * 19 18 17 21 21 N 1.31820 * 121.22957 * 359.97438 * 20 19 18 22 22 C 1.32503 * 121.76751 * 359.76552 * 21 20 19 23 23 S 1.76200 * 119.83645 * 180.27007 * 22 21 20 24 24 C 1.47206 * 118.55462 * 53.54519 * 14 13 12 25 25 H 0.97002 * 120.00073 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45993 * 58.66104 * 11 9 7 27 27 H 1.08998 * 109.45007 * 298.70207 * 11 9 7 28 28 H 1.08996 * 109.49762 * 301.41601 * 12 11 9 29 29 H 1.09004 * 109.49572 * 181.31099 * 12 11 9 30 30 H 1.08993 * 109.58838 * 65.15050 * 13 12 11 31 31 H 1.09000 * 109.58097 * 185.43851 * 13 12 11 32 32 H 1.08005 * 120.81363 * 359.96290 * 18 17 15 33 33 H 1.08002 * 120.24196 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.38145 * 179.97438 * 20 19 18 35 35 H 1.40998 * 99.99806 * 270.22239 * 23 22 21 36 36 H 1.08998 * 109.53409 * 186.67419 * 24 14 13 37 37 H 1.08996 * 109.67899 * 66.36633 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5031 2.6201 0.8027 6 1 3.5954 1.4121 0.5921 7 6 2.0046 -1.1940 0.0005 8 1 3.0740 -1.2000 0.1512 9 6 1.2658 -2.4907 -0.2092 10 1 0.4577 -2.5707 0.5179 11 6 2.2322 -3.6638 -0.0300 12 6 1.4759 -4.9820 -0.2104 13 6 0.8974 -5.0443 -1.6276 14 7 0.0798 -3.8460 -1.8607 15 6 -1.1971 -3.9564 -2.2775 16 8 -1.8881 -2.9620 -2.3901 17 6 -1.7561 -5.2822 -2.5969 18 6 -0.9784 -6.2450 -3.2507 19 6 -1.5495 -7.4742 -3.5273 20 6 -2.8603 -7.7166 -3.1548 21 7 -3.5771 -6.7972 -2.5397 22 6 -3.0788 -5.6051 -2.2458 23 16 -4.0805 -4.4165 -1.4160 24 6 0.6849 -2.5247 -1.6263 25 1 -0.4850 0.8401 -0.0004 26 1 2.6657 -3.6277 0.9694 27 1 3.0267 -3.5963 -0.7731 28 1 0.6655 -5.0388 0.5163 29 1 2.1597 -5.8173 -0.0597 30 1 1.7102 -5.0789 -2.3529 31 1 0.2777 -5.9351 -1.7304 32 1 0.0425 -6.0333 -3.5325 33 1 -0.9767 -8.2393 -4.0303 34 1 -3.3040 -8.6770 -3.3723 35 1 -4.6625 -3.7696 -2.5254 36 1 -0.0769 -1.7518 -1.7275 37 1 1.4800 -2.3513 -2.3514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855260214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:24 Heat of formation + Delta-G solvation = 14.941031 kcal Electronic energy + Delta-G solvation = -21427.340259 eV Core-core repulsion = 18296.326056 eV Total energy + Delta-G solvation = -3131.014203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65328 -38.91273 -36.71978 -33.79193 -32.65417 -31.76152 -31.42955 -29.78917 -25.65633 -25.17137 -23.93338 -23.48767 -21.87949 -20.21156 -18.87321 -18.08510 -17.17630 -16.65862 -16.17190 -16.06553 -15.37635 -14.78848 -14.51600 -14.17169 -13.96542 -13.87743 -13.39864 -13.20135 -12.92531 -12.64919 -12.42582 -12.15049 -11.90798 -11.16189 -10.96727 -10.95411 -10.58203 -10.48940 -10.27848 -9.98741 -9.93288 -9.87695 -9.46362 -9.19405 -9.07039 -8.96445 -8.39740 -7.95321 -7.53849 -6.01044 -4.06507 0.42637 0.84511 1.63618 2.69417 3.08445 3.30797 3.39400 3.40934 3.44536 3.75753 4.30021 4.43932 4.53734 4.62199 4.76771 4.92426 5.19237 5.24239 5.30520 5.42966 5.60263 5.67124 5.74169 5.90583 6.12670 6.20146 6.27590 6.55790 6.60364 6.80204 6.93973 7.04541 7.13975 7.51339 7.59600 7.85366 7.96721 8.09009 8.37317 8.70564 8.98001 9.57995 11.06369 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.004960 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.907683 B = 5643.919620 C = 6457.780169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.038 3.962 10 H 0.039 0.961 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.098 3.902 14 N -0.596 5.596 15 C 0.549 3.451 16 O -0.507 6.507 17 C -0.124 4.124 18 C -0.055 4.055 19 C -0.159 4.159 20 C 0.105 3.895 21 N -0.450 5.450 22 C 0.149 3.851 23 S -0.085 6.085 24 C 0.120 3.880 25 H 0.263 0.737 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 -16.290 -7.108 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.019 3.981 10 H 0.057 0.943 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.025 4.025 14 N -0.329 5.329 15 C 0.333 3.667 16 O -0.383 6.383 17 C -0.133 4.133 18 C -0.083 4.083 19 C -0.178 4.178 20 C -0.057 4.057 21 N -0.160 5.160 22 C -0.099 4.099 23 S 0.072 5.928 24 C 0.000 4.000 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.392 -15.215 -6.265 16.800 hybrid contribution 1.616 0.637 -1.527 2.313 sum -1.777 -14.578 -7.792 16.625 Atomic orbital electron populations 1.69990 1.05775 1.26863 1.48447 1.25037 0.94766 0.99173 0.94772 0.86667 0.80010 0.83865 0.78012 1.20688 1.21253 1.19885 1.21026 0.94026 0.90473 1.50770 0.92378 1.18977 0.94444 0.92331 0.92332 0.94308 1.21627 0.98507 0.94025 1.00599 1.21961 1.00113 0.99257 0.95937 1.22019 0.94698 0.87968 0.97859 1.48432 1.10654 1.09154 1.64633 1.17721 0.82300 0.87375 0.79271 1.90847 1.57759 1.37539 1.52122 1.21523 0.95171 0.96694 0.99911 1.22019 0.99993 0.92121 0.94170 1.22231 0.96820 0.97866 1.00920 1.23065 0.91236 0.98222 0.93165 1.68332 1.37028 1.00540 1.10108 1.22660 0.93091 0.95218 0.98966 1.87092 1.57125 1.36883 1.11720 1.22298 0.97681 0.81043 0.98966 0.92697 0.92819 0.93272 0.91942 0.92142 0.91735 0.90702 0.83219 0.83718 0.81902 0.92340 0.87501 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.44 12.20 55.43 0.68 -24.76 16 2 C 0.07 1.82 5.24 -17.82 -0.09 1.73 16 3 Si 0.89 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.98 8.48 -34.44 -0.29 -14.27 16 8 H 0.06 1.52 7.77 -52.49 -0.41 1.11 16 9 C 0.04 0.93 2.11 -91.65 -0.19 0.73 16 10 H 0.04 1.07 8.09 -51.93 -0.42 0.65 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.25 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C 0.10 1.44 4.89 -3.71 -0.02 1.42 16 14 N -0.60 -11.45 2.98 -173.83 -0.52 -11.97 16 15 C 0.55 10.84 7.01 -12.54 -0.09 10.75 16 16 O -0.51 -11.92 14.57 5.27 0.08 -11.85 16 17 C -0.12 -1.96 5.23 -104.63 -0.55 -2.51 16 18 C -0.06 -0.63 7.47 -38.90 -0.29 -0.92 16 19 C -0.16 -1.39 10.09 -39.48 -0.40 -1.79 16 20 C 0.11 1.05 11.16 -17.49 -0.20 0.86 16 21 N -0.45 -6.33 10.33 -11.68 -0.12 -6.45 16 22 C 0.15 2.42 7.08 -16.37 -0.12 2.30 16 23 S -0.08 -1.47 23.68 -107.50 -2.55 -4.02 16 24 C 0.12 2.77 5.50 -3.56 -0.02 2.76 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.07 0.94 4.53 -51.93 -0.24 0.70 16 32 H 0.15 1.43 6.44 -52.48 -0.34 1.10 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.11 1.82 9.55 96.90 0.93 2.74 16 36 H 0.11 2.91 5.93 -51.93 -0.31 2.60 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -31.87 315.65 -8.55 -40.42 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.30 Total: 1.30 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.55 Total: -3.47 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.04 Total: -43.18 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.55 Total: -4.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.87 -8.55 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.359 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds