Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99857 * 2 1 4 4 H 1.48499 * 109.47072 * 274.98376 * 3 2 1 5 5 H 1.48507 * 109.47235 * 34.98106 * 3 2 1 6 6 H 1.48500 * 109.47217 * 154.98363 * 3 2 1 7 7 C 1.37875 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99622 * 189.26856 * 7 2 1 9 9 C 1.50701 * 119.99882 * 9.27457 * 7 2 1 10 10 H 1.08998 * 109.49390 * 305.47113 * 9 7 2 11 11 C 1.53041 * 109.49533 * 185.40922 * 9 7 2 12 12 C 1.53039 * 109.53715 * 178.68019 * 11 9 7 13 13 C 1.53198 * 109.30836 * 61.37081 * 12 11 9 14 14 N 1.46927 * 108.89037 * 305.28819 * 13 12 11 15 15 C 1.34774 * 120.63205 * 233.67862 * 14 13 12 16 16 O 1.21611 * 120.00031 * 175.60383 * 15 14 13 17 17 C 1.47390 * 119.99822 * 355.60071 * 15 14 13 18 18 C 1.39967 * 120.61424 * 321.12520 * 17 15 14 19 19 C 1.38333 * 118.37546 * 179.97438 * 18 17 15 20 20 C 1.38406 * 119.52136 * 0.02562 * 19 18 17 21 21 N 1.31820 * 121.22957 * 359.97438 * 20 19 18 22 22 C 1.32503 * 121.76751 * 359.76552 * 21 20 19 23 23 S 1.76200 * 119.83645 * 180.27007 * 22 21 20 24 24 C 1.47206 * 118.55462 * 53.54519 * 14 13 12 25 25 H 0.97002 * 120.00073 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.45993 * 58.66104 * 11 9 7 27 27 H 1.08998 * 109.45007 * 298.70207 * 11 9 7 28 28 H 1.08996 * 109.49762 * 301.41601 * 12 11 9 29 29 H 1.09004 * 109.49572 * 181.31099 * 12 11 9 30 30 H 1.08993 * 109.58838 * 65.15050 * 13 12 11 31 31 H 1.09000 * 109.58097 * 185.43851 * 13 12 11 32 32 H 1.08005 * 120.81363 * 359.96290 * 18 17 15 33 33 H 1.08002 * 120.24196 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.38145 * 179.97438 * 20 19 18 35 35 H 1.40998 * 99.99806 * 270.22239 * 23 22 21 36 36 H 1.08998 * 109.53409 * 186.67419 * 24 14 13 37 37 H 1.08996 * 109.67899 * 66.36633 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5031 2.6201 0.8027 6 1 3.5954 1.4121 0.5921 7 6 2.0046 -1.1940 0.0005 8 1 3.0740 -1.2000 0.1512 9 6 1.2658 -2.4907 -0.2092 10 1 0.4577 -2.5707 0.5179 11 6 2.2322 -3.6638 -0.0300 12 6 1.4759 -4.9820 -0.2104 13 6 0.8974 -5.0443 -1.6276 14 7 0.0798 -3.8460 -1.8607 15 6 -1.1971 -3.9564 -2.2775 16 8 -1.8881 -2.9620 -2.3901 17 6 -1.7561 -5.2822 -2.5969 18 6 -0.9784 -6.2450 -3.2507 19 6 -1.5495 -7.4742 -3.5273 20 6 -2.8603 -7.7166 -3.1548 21 7 -3.5771 -6.7972 -2.5397 22 6 -3.0788 -5.6051 -2.2458 23 16 -4.0805 -4.4165 -1.4160 24 6 0.6849 -2.5247 -1.6263 25 1 -0.4850 0.8401 -0.0004 26 1 2.6657 -3.6277 0.9694 27 1 3.0267 -3.5963 -0.7731 28 1 0.6655 -5.0388 0.5163 29 1 2.1597 -5.8173 -0.0597 30 1 1.7102 -5.0789 -2.3529 31 1 0.2777 -5.9351 -1.7304 32 1 0.0425 -6.0333 -3.5325 33 1 -0.9767 -8.2393 -4.0303 34 1 -3.3040 -8.6770 -3.3723 35 1 -4.6625 -3.7696 -2.5254 36 1 -0.0769 -1.7518 -1.7275 37 1 1.4800 -2.3513 -2.3514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855260214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = -6.938171 kcal Electronic energy + Delta-G solvation = -21428.289012 eV Core-core repulsion = 18296.326056 eV Total energy + Delta-G solvation = -3131.962957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81690 -40.22010 -38.30476 -35.45909 -34.06770 -33.16442 -32.49986 -31.47052 -27.24672 -26.80247 -24.95210 -24.74396 -23.43852 -21.71023 -20.32736 -19.26130 -18.66063 -18.07208 -17.71822 -17.19518 -16.80520 -16.54056 -15.86780 -15.49147 -15.29867 -15.10917 -14.69970 -14.54035 -14.34613 -14.27134 -13.76651 -13.53623 -13.41600 -12.86672 -12.75642 -12.32522 -12.30079 -12.17189 -11.88560 -11.63225 -11.29436 -11.07425 -10.91789 -10.79941 -10.50068 -10.49034 -10.21154 -9.50204 -8.95524 -8.12319 -6.24969 -0.60570 -0.06719 0.46414 1.40580 1.41997 1.44775 1.52596 1.72636 2.09958 2.43361 2.64193 3.18132 3.30095 3.57613 3.70856 3.85779 4.03634 4.11451 4.17626 4.31954 4.43293 4.57389 4.73910 4.77002 4.83540 4.84628 4.95664 5.08791 5.21167 5.28719 5.32701 5.45103 5.55430 5.63639 5.91174 5.95901 6.34237 6.54172 6.62653 6.89181 7.21758 7.44159 8.94406 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.004960 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.907683 B = 5643.919620 C = 6457.780169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.036 3.964 10 H -0.014 1.014 11 C -0.104 4.104 12 C -0.129 4.129 13 C 0.093 3.907 14 N -0.599 5.599 15 C 0.541 3.459 16 O -0.563 6.563 17 C -0.144 4.144 18 C -0.053 4.053 19 C -0.124 4.124 20 C 0.110 3.890 21 N -0.471 5.471 22 C 0.132 3.868 23 S -0.135 6.135 24 C 0.135 3.865 25 H 0.258 0.742 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.176 0.824 33 H 0.203 0.797 34 H 0.209 0.791 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -20.379 -8.987 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.017 3.983 10 H 0.004 0.996 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.028 4.028 14 N -0.331 5.331 15 C 0.329 3.671 16 O -0.442 6.442 17 C -0.154 4.154 18 C -0.080 4.080 19 C -0.143 4.143 20 C -0.052 4.052 21 N -0.182 5.182 22 C -0.116 4.116 23 S 0.022 5.978 24 C 0.013 3.987 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.193 0.807 33 H 0.220 0.780 34 H 0.225 0.775 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.743 -19.345 -8.133 20.998 hybrid contribution 0.807 1.733 -0.986 2.150 sum 0.064 -17.612 -9.119 19.833 Atomic orbital electron populations 1.70176 1.07634 1.27247 1.50244 1.25872 0.95357 1.02875 0.94625 0.85634 0.79088 0.79470 0.78052 1.20198 1.21612 1.18356 1.21488 0.94395 0.91770 1.49701 0.91797 1.18900 0.93886 0.93957 0.91540 0.99561 1.21511 0.97897 0.93891 1.00872 1.21938 0.99945 0.98611 0.96185 1.22425 0.95524 0.86875 0.97980 1.48419 1.11201 1.09157 1.64326 1.18415 0.81919 0.88661 0.78152 1.90808 1.59076 1.39959 1.54374 1.21170 0.95649 0.95645 1.02904 1.22362 1.00753 0.91966 0.92926 1.22818 0.96122 0.97359 0.98039 1.23958 0.91906 0.98570 0.90733 1.68267 1.38186 1.00291 1.11420 1.22303 0.92734 0.95804 1.00795 1.87095 1.58283 1.38969 1.13448 1.21686 0.96240 0.82391 0.98396 0.93262 0.93295 0.91605 0.94145 0.87371 0.88213 0.87671 0.80654 0.78029 0.77479 0.92122 0.92616 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.74 12.20 21.45 0.26 -56.48 16 2 C 0.01 0.71 5.24 84.65 0.44 1.16 16 3 Si 0.95 44.42 29.55 68.60 2.03 46.45 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -29.33 8.48 25.60 0.22 -29.11 16 8 H 0.06 3.35 7.77 -2.91 -0.02 3.32 16 9 C 0.04 1.83 2.11 -11.46 -0.02 1.80 16 10 H -0.01 -0.83 8.09 -2.39 -0.02 -0.85 16 11 C -0.10 -3.90 5.11 30.62 0.16 -3.74 16 12 C -0.13 -3.70 6.08 30.67 0.19 -3.51 16 13 C 0.09 2.42 4.89 86.36 0.42 2.84 16 14 N -0.60 -23.16 2.98 -822.12 -2.45 -25.61 16 15 C 0.54 22.13 7.01 86.65 0.61 22.74 16 16 O -0.56 -28.67 14.57 -4.07 -0.06 -28.73 16 17 C -0.14 -4.42 5.23 -19.87 -0.10 -4.53 16 18 C -0.05 -0.97 7.47 22.71 0.17 -0.80 16 19 C -0.12 -1.34 10.09 22.33 0.23 -1.11 16 20 C 0.11 1.64 11.16 84.73 0.95 2.58 16 21 N -0.47 -12.30 10.33 -190.86 -1.97 -14.27 16 22 C 0.13 4.27 7.08 85.17 0.60 4.87 16 23 S -0.13 -5.07 23.68 -56.49 -1.34 -6.40 16 24 C 0.13 6.51 5.50 86.31 0.47 6.98 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 31 H 0.11 2.14 4.53 -2.39 -0.01 2.13 16 32 H 0.18 2.30 6.44 -2.91 -0.02 2.28 16 33 H 0.20 0.04 8.06 -2.91 -0.02 0.01 16 34 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.11 4.12 9.55 73.80 0.70 4.83 16 36 H 0.06 3.27 5.93 -2.39 -0.01 3.26 16 37 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -80.18 315.65 2.60 -77.58 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.81 Total: 7.29 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.32 Total: 0.18 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -4.16 Total: -96.36 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.06 Total: -28.73 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -1.34 Total: -6.40 kcal Total: -80.18 2.60 -77.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.640 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds