Wall clock time and date at job start Tue Mar 31 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00484 * 2 1 4 4 H 1.48504 * 109.47243 * 240.00130 * 3 2 1 5 5 H 1.48500 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47234 * 120.00148 * 3 2 1 7 7 C 1.37887 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99436 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99885 * 0.27938 * 7 2 1 10 10 H 1.08994 * 109.50082 * 59.72534 * 9 7 2 11 11 C 1.53045 * 109.49509 * 179.78861 * 9 7 2 12 12 C 1.53037 * 109.53942 * 181.31318 * 11 9 7 13 13 C 1.53189 * 109.31227 * 298.63672 * 12 11 9 14 14 N 1.46931 * 108.77818 * 54.63091 * 13 12 11 15 15 C 1.34773 * 120.62888 * 126.43285 * 14 13 12 16 16 O 1.21613 * 119.99753 * 175.79433 * 15 14 13 17 17 C 1.47388 * 120.00305 * 355.79772 * 15 14 13 18 18 C 1.39975 * 120.61418 * 54.43340 * 17 15 14 19 19 C 1.38331 * 118.37438 * 180.02562 * 18 17 15 20 20 C 1.38405 * 119.52235 * 0.02562 * 19 18 17 21 21 N 1.31821 * 121.22884 * 0.02562 * 20 19 18 22 22 C 1.32503 * 121.76569 * 359.65178 * 21 20 19 23 23 S 1.76206 * 119.83385 * 180.31708 * 22 21 20 24 24 C 1.46936 * 118.76370 * 306.41377 * 14 13 12 25 25 H 0.97001 * 119.99273 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.45857 * 301.33511 * 11 9 7 27 27 H 1.09002 * 109.45664 * 61.29164 * 11 9 7 28 28 H 1.09006 * 109.49456 * 58.58648 * 12 11 9 29 29 H 1.08997 * 109.49858 * 178.64776 * 12 11 9 30 30 H 1.08997 * 109.58992 * 174.42034 * 13 12 11 31 31 H 1.08997 * 109.58524 * 294.84607 * 13 12 11 32 32 H 1.07999 * 120.80815 * 359.97438 * 18 17 15 33 33 H 1.07994 * 120.23489 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.38275 * 179.97438 * 20 19 18 35 35 H 1.40999 * 99.99696 * 270.31807 * 23 22 21 36 36 H 1.08994 * 109.56284 * 293.78556 * 24 14 13 37 37 H 1.09001 * 109.60847 * 173.35507 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 -0.0052 10 1 0.6241 -2.5535 -0.8953 11 6 2.2448 -3.6630 -0.0087 12 6 1.4808 -4.9884 -0.0476 13 6 0.6043 -5.1049 1.2033 14 7 -0.2543 -3.9158 1.2916 15 6 -1.5907 -4.0413 1.4127 16 8 -2.2832 -3.0528 1.5617 17 6 -2.2129 -5.3766 1.3646 18 6 -1.7868 -6.3931 2.2274 19 6 -2.4026 -7.6288 2.1422 20 6 -3.4121 -7.8253 1.2160 21 7 -3.7992 -6.8559 0.4109 22 6 -3.2483 -5.6516 0.4540 23 16 -3.8110 -4.3906 -0.6405 24 6 0.3712 -2.5871 1.2458 25 1 -0.4849 0.8401 0.0004 26 1 2.8880 -3.5886 -0.8856 27 1 2.8551 -3.6219 0.8935 28 1 0.8514 -5.0196 -0.9371 29 1 2.1895 -5.8162 -0.0743 30 1 -0.0155 -5.9988 1.1333 31 1 1.2372 -5.1651 2.0886 32 1 -0.9960 -6.2170 2.9416 33 1 -2.0972 -8.4346 2.7931 34 1 -3.8910 -8.7912 1.1511 35 1 -2.9533 -4.6171 -1.7365 36 1 0.9848 -2.4417 2.1349 37 1 -0.4020 -1.8200 1.2035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855260215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:26 Heat of formation + Delta-G solvation = 11.146467 kcal Electronic energy + Delta-G solvation = -21494.482909 eV Core-core repulsion = 18363.304161 eV Total energy + Delta-G solvation = -3131.178748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59637 -38.91258 -36.69927 -33.70112 -32.69432 -31.81247 -31.41968 -29.76382 -25.63909 -25.13670 -23.95508 -23.49810 -21.88533 -20.21434 -18.79120 -18.14991 -17.17538 -16.73736 -16.19095 -15.91130 -15.53416 -14.72518 -14.47652 -14.26644 -13.94790 -13.68173 -13.46823 -13.37162 -12.91942 -12.67654 -12.36085 -12.07656 -11.93898 -11.12745 -11.04662 -10.95881 -10.57507 -10.54245 -10.27834 -10.03838 -9.91838 -9.83645 -9.43830 -9.20370 -9.08097 -8.93364 -8.45787 -7.93703 -7.68819 -6.01389 -4.10813 0.46956 0.87825 1.59014 2.65050 3.08246 3.30679 3.37459 3.38274 3.45962 3.69947 4.31463 4.41410 4.56844 4.64365 4.79958 4.94015 5.17945 5.25263 5.28797 5.39044 5.56898 5.69990 5.76064 5.88195 6.07255 6.21443 6.22480 6.52363 6.60079 6.78312 6.90768 7.07943 7.20043 7.52388 7.59908 7.81955 7.95245 8.15483 8.34820 8.74486 8.92943 9.55104 11.03886 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.005027 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.329196 B = 5568.234391 C = 6235.332989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.101 3.899 14 N -0.599 5.599 15 C 0.546 3.454 16 O -0.496 6.496 17 C -0.115 4.115 18 C -0.057 4.057 19 C -0.154 4.154 20 C 0.102 3.898 21 N -0.448 5.448 22 C 0.143 3.857 23 S -0.080 6.080 24 C 0.114 3.886 25 H 0.265 0.735 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -16.701 3.630 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.022 4.022 14 N -0.332 5.332 15 C 0.330 3.670 16 O -0.370 6.370 17 C -0.124 4.124 18 C -0.084 4.084 19 C -0.174 4.174 20 C -0.060 4.060 21 N -0.158 5.158 22 C -0.106 4.106 23 S 0.076 5.924 24 C -0.005 4.005 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.985 -15.396 2.669 16.126 hybrid contribution 2.113 -0.120 0.523 2.180 sum -1.872 -15.517 3.193 15.952 Atomic orbital electron populations 1.69866 1.05690 1.27103 1.48861 1.25050 0.94890 0.99230 0.94745 0.86655 0.79587 0.83192 0.78556 1.20328 1.21195 1.20238 1.21008 0.92842 0.90039 1.52371 0.92416 1.18962 0.92570 0.92318 0.93968 0.95424 1.21636 0.98583 0.93925 1.00689 1.21944 0.98582 0.99346 0.97295 1.21842 0.93534 0.88071 0.98790 1.48473 1.04682 1.09185 1.70869 1.17774 0.82753 0.87341 0.79109 1.90869 1.61355 1.37590 1.47189 1.21595 0.96825 0.96349 0.97659 1.21855 0.98007 0.91768 0.96810 1.22213 0.97412 0.97973 0.99829 1.23038 0.93979 0.98053 0.90976 1.68314 1.25336 0.99444 1.22700 1.22627 0.94471 0.94909 0.98572 1.87445 1.51410 1.36833 1.16676 1.22368 0.98749 0.80752 0.98660 0.92450 0.92968 0.93027 0.92521 0.92176 0.91252 0.91608 0.83550 0.83735 0.81917 0.93298 0.93707 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 11.40 55.43 0.63 -24.59 16 2 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.91 8.56 -34.44 -0.29 -14.21 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.13 5.11 -26.69 -0.14 -2.27 16 12 C -0.13 -2.09 6.08 -26.61 -0.16 -2.26 16 13 C 0.10 1.51 5.58 -3.71 -0.02 1.49 16 14 N -0.60 -11.64 2.97 -174.05 -0.52 -12.16 16 15 C 0.55 10.91 6.57 -12.54 -0.08 10.83 16 16 O -0.50 -11.94 15.49 5.27 0.08 -11.86 16 17 C -0.12 -1.85 4.90 -104.63 -0.51 -2.36 16 18 C -0.06 -0.66 7.57 -38.90 -0.29 -0.96 16 19 C -0.15 -1.38 10.09 -39.49 -0.40 -1.78 16 20 C 0.10 1.04 11.16 -17.49 -0.20 0.84 16 21 N -0.45 -6.40 10.33 -11.68 -0.12 -6.52 16 22 C 0.14 2.34 7.08 -16.37 -0.12 2.23 16 23 S -0.08 -1.41 24.26 -107.50 -2.61 -4.02 16 24 C 0.11 2.68 5.39 -3.71 -0.02 2.66 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.88 4.74 -51.93 -0.25 0.64 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.15 1.42 7.44 -52.49 -0.39 1.03 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.10 1.67 9.55 96.90 0.93 2.59 16 36 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.13 3.46 5.16 -51.93 -0.27 3.19 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -31.62 317.01 -8.63 -40.26 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.33 Total: 1.46 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.53 Total: -3.33 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.01 Total: -43.26 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.61 Total: -4.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.62 -8.63 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.402 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds